Wall clock time and date at job start Mon Mar 30 2020 03:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.38905 * 126.80891 * 166.25839 * 3 2 1 5 5 N 1.37887 * 126.26020 * 359.97438 * 4 3 2 6 6 N 1.36537 * 107.48097 * 179.97438 * 4 3 2 7 7 C 1.37116 * 125.29011 * 179.97438 * 6 4 3 8 8 H 1.08003 * 119.99602 * 0.02562 * 7 6 4 9 9 C 1.39113 * 120.00173 * 179.97438 * 7 6 4 10 10 N 1.31202 * 119.99731 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00140 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47120 * 90.00114 * 11 9 7 13 13 H 1.48501 * 109.47012 * 210.00331 * 11 9 7 14 14 H 1.48507 * 109.47156 * 330.00173 * 11 9 7 15 15 N 1.39758 * 109.41698 * 359.77233 * 6 4 3 16 16 C 1.31767 * 109.36523 * 0.39266 * 15 6 4 17 17 C 1.47443 * 126.31918 * 179.88485 * 16 15 6 18 18 O 1.21513 * 120.00169 * 179.68921 * 17 16 15 19 19 O 1.34778 * 120.00229 * 359.68857 * 17 16 15 20 20 H 0.96999 * 120.00283 * 0.02953 * 5 4 3 21 21 H 0.97005 * 120.00344 * 180.02562 * 5 4 3 22 22 H 0.97005 * 119.99674 * 180.02562 * 10 9 7 23 23 H 0.96700 * 117.00264 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3998 1.0813 -0.2642 5 7 2.9977 2.3624 -0.5780 6 7 4.6884 0.6431 -0.1563 7 6 5.8060 1.4147 -0.3452 8 1 5.7041 2.4590 -0.6009 9 6 7.0709 0.8527 -0.2063 10 7 7.1945 -0.4159 0.1048 11 14 8.5934 1.9041 -0.4630 12 1 8.9958 2.5161 0.8288 13 1 9.6999 1.0563 -0.9751 14 1 8.2949 2.9757 -1.4468 15 7 4.6912 -0.7132 0.1812 16 6 3.4490 -1.1414 0.2800 17 6 3.0218 -2.5120 0.6159 18 8 1.8386 -2.7808 0.6816 19 8 3.9437 -3.4669 0.8501 20 1 2.0527 2.5751 -0.6301 21 1 3.6597 3.0510 -0.7467 22 1 8.0766 -0.8077 0.2020 23 1 3.6156 -4.3504 1.0662 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082822818.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:28 Heat of formation + Delta-G solvation = 14.121636 kcal Electronic energy + Delta-G solvation = -14380.266536 eV Core-core repulsion = 11616.444776 eV Total energy + Delta-G solvation = -2763.821760 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 222.054 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.06484 -38.98123 -35.58113 -35.24030 -33.89895 -33.76418 -30.78999 -27.91466 -26.10178 -23.78851 -21.14592 -20.07398 -18.39227 -17.36165 -16.82981 -16.62350 -15.30749 -15.06457 -14.93080 -14.28984 -13.97980 -13.52773 -12.67235 -12.32709 -12.26484 -11.96412 -11.47674 -11.40159 -11.26195 -10.96229 -10.67694 -10.31652 -10.10018 -9.68979 -9.42533 -8.36510 -6.94412 -6.82636 -4.58931 2.02053 2.72220 2.90190 2.97931 3.07560 3.35082 3.55901 3.72995 3.82408 3.92883 4.56768 4.74931 4.82488 5.19882 5.76982 6.20636 6.42651 6.73937 6.98291 7.07482 7.50889 7.73887 8.08104 8.27214 8.56413 8.63593 8.92408 9.08153 10.13039 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.031056 B = 0.010328 C = 0.007772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.368637 B = 2710.507056 C = 3602.032657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C 0.321 3.679 3 C -0.228 4.228 4 C 0.315 3.685 5 N -0.848 5.848 6 N -0.158 5.158 7 C -0.331 4.331 8 H 0.122 0.878 9 C 0.050 3.950 10 N -0.762 5.762 11 Si 0.939 3.061 12 H -0.269 1.269 13 H -0.274 1.274 14 H -0.263 1.263 15 N -0.168 5.168 16 C -0.002 4.002 17 C 0.576 3.424 18 O -0.526 6.526 19 O -0.499 6.499 20 H 0.406 0.594 21 H 0.401 0.599 22 H 0.281 0.719 23 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.229 2.679 -0.662 3.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.168 5.168 2 C 0.010 3.990 3 C -0.251 4.251 4 C 0.085 3.915 5 N -0.397 5.397 6 N 0.067 4.933 7 C -0.463 4.463 8 H 0.140 0.860 9 C -0.169 4.169 10 N -0.388 5.388 11 Si 0.762 3.238 12 H -0.194 1.194 13 H -0.198 1.198 14 H -0.187 1.187 15 N 0.000 5.000 16 C -0.163 4.163 17 C 0.420 3.580 18 O -0.414 6.414 19 O -0.307 6.307 20 H 0.236 0.764 21 H 0.230 0.770 22 H 0.092 0.908 23 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 1.736 2.346 -0.580 2.976 hybrid contribution 0.143 0.401 -0.096 0.437 sum 1.880 2.747 -0.676 3.397 Atomic orbital electron populations 1.81071 1.11856 1.08909 1.14970 1.24413 0.91157 0.92368 0.91109 1.15319 0.84265 0.92753 1.32774 1.17475 0.84978 0.86193 1.02863 1.40887 1.09848 1.06748 1.82266 1.44574 1.02112 1.05727 1.40937 1.19883 0.81707 0.93819 1.50862 0.86014 1.25623 0.99755 0.96313 0.95202 1.70113 1.25690 1.10687 1.32292 0.85751 0.79408 0.79319 0.79328 1.19386 1.19848 1.18687 1.78513 1.14464 0.88973 1.18023 1.21231 0.91740 0.90517 1.12820 1.19369 0.82603 0.83744 0.72327 1.90870 1.18420 1.81980 1.50084 1.84765 1.41457 1.22531 1.81989 0.76440 0.77015 0.90763 0.74104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -11.14 18.54 41.84 0.78 -10.36 14 2 C 0.32 7.19 14.54 -22.47 -0.33 6.87 14 3 C -0.23 -5.15 6.19 -104.21 -0.65 -5.80 14 4 C 0.31 6.64 7.95 -152.51 -1.21 5.43 14 5 N -0.85 -13.59 9.03 31.61 0.29 -13.30 14 6 N -0.16 -3.76 3.71 -10.44 -0.04 -3.79 14 7 C -0.33 -7.44 10.05 -14.86 -0.15 -7.59 14 8 H 0.12 2.35 6.99 -52.48 -0.37 1.98 14 9 C 0.05 1.12 5.50 -17.50 -0.10 1.02 14 10 N -0.76 -18.64 11.74 55.50 0.65 -17.99 14 11 Si 0.94 16.57 29.55 -169.99 -5.02 11.54 14 12 H -0.27 -4.73 7.11 56.52 0.40 -4.33 14 13 H -0.27 -4.87 7.11 56.52 0.40 -4.47 14 14 H -0.26 -4.43 7.11 56.52 0.40 -4.03 14 15 N -0.17 -4.25 10.26 34.51 0.35 -3.89 14 16 C 0.00 -0.04 7.33 -80.63 -0.59 -0.63 14 17 C 0.58 12.52 8.34 34.48 0.29 12.80 14 18 O -0.53 -12.11 16.81 -19.27 -0.32 -12.44 14 19 O -0.50 -9.11 13.44 -40.71 -0.55 -9.66 14 20 H 0.41 5.72 8.67 -40.82 -0.35 5.37 14 21 H 0.40 5.53 7.91 -40.82 -0.32 5.21 14 22 H 0.28 6.32 8.30 -40.82 -0.34 5.98 14 23 H 0.40 4.80 9.11 45.56 0.42 5.22 14 LS Contribution 235.28 15.07 3.55 3.55 Total: -1.00 -30.50 235.28 -2.82 -33.31 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: 0.24 Total: 10.93 kcal Atomic # 6 Polarization: 14.85 SS G_CDS: -2.73 Total: 12.11 kcal Atomic # 7 Polarization: -51.37 SS G_CDS: 2.03 Total: -49.35 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.87 Total: -22.10 kcal Atomic # 14 Polarization: 16.57 SS G_CDS: -5.02 Total: 11.54 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -30.50 -2.82 -33.31 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082822818.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.434 kcal (2) G-P(sol) polarization free energy of solvation -30.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds