Wall clock time and date at job start Mon Mar 30 2020 03:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99867 * 2 1 4 4 H 1.48498 * 109.47092 * 270.00058 * 3 2 1 5 5 H 1.48497 * 109.47147 * 29.99737 * 3 2 1 6 6 H 1.48502 * 109.46972 * 150.00324 * 3 2 1 7 7 C 1.37874 * 119.99833 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99947 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00492 * 0.02562 * 7 2 1 10 10 H 1.09005 * 110.34793 * 57.87112 * 9 7 2 11 11 C 1.54346 * 110.30584 * 180.02562 * 9 7 2 12 12 C 1.54347 * 102.57063 * 92.66991 * 11 9 7 13 13 C 1.51374 * 105.17206 * 26.25236 * 12 11 9 14 14 C 1.38504 * 130.37394 * 162.84590 * 13 12 11 15 15 C 1.38080 * 120.23536 * 179.97438 * 14 13 12 16 16 C 1.38376 * 119.91859 * 359.97438 * 15 14 13 17 17 Cl 1.73599 * 120.04380 * 180.02562 * 16 15 14 18 18 C 1.38215 * 119.90378 * 0.02562 * 16 15 14 19 19 C 1.38226 * 109.75534 * 342.81032 * 13 12 11 20 20 H 0.96997 * 120.00509 * 0.02562 * 1 2 3 21 21 H 1.09002 * 110.82237 * 334.34366 * 11 9 7 22 22 H 1.09005 * 110.81964 * 210.99200 * 11 9 7 23 23 H 1.08997 * 110.30237 * 145.18150 * 12 11 9 24 24 H 1.09000 * 110.29936 * 267.23157 * 12 11 9 25 25 H 1.08005 * 119.88485 * 359.96051 * 14 13 12 26 26 H 1.08004 * 120.04319 * 179.97438 * 15 14 13 27 27 H 1.08004 * 119.89108 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 1 0.5911 -2.5551 -0.8675 11 6 2.2369 -3.6867 -0.0015 12 6 2.3963 -3.9907 1.5034 13 6 1.1133 -3.5056 2.1436 14 6 0.5648 -3.7920 3.3828 15 6 -0.6358 -3.2239 3.7598 16 6 -1.2939 -2.3648 2.8974 17 17 -2.8032 -1.6481 3.3684 18 6 -0.7477 -2.0782 1.6606 19 6 0.4563 -2.6478 1.2816 20 1 -0.4851 0.8400 -0.0004 21 1 3.1914 -3.3981 -0.4417 22 1 1.8127 -4.5425 -0.5268 23 1 2.5167 -5.0623 1.6621 24 1 3.2513 -3.4505 1.9098 25 1 1.0780 -4.4623 4.0565 26 1 -1.0609 -3.4497 4.7267 27 1 -1.2616 -1.4079 0.9874 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084352462.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:38 Heat of formation + Delta-G solvation = -8.269484 kcal Electronic energy + Delta-G solvation = -12879.530250 eV Core-core repulsion = 10626.694295 eV Total energy + Delta-G solvation = -2252.835955 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.051 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.75136 -37.66704 -36.23030 -34.45964 -31.77002 -29.77020 -28.72402 -25.78474 -23.41489 -21.58618 -21.28516 -18.63878 -17.14433 -16.53839 -16.29105 -15.84047 -15.38926 -14.37139 -14.17672 -14.10120 -13.96514 -13.17871 -12.89776 -12.60808 -12.42820 -12.28224 -12.16723 -11.94805 -11.85955 -11.44887 -11.18420 -11.00397 -10.54504 -9.42876 -9.07563 -8.09024 -6.24110 0.49156 0.74271 1.34107 1.39955 1.41478 1.49889 2.40852 3.00535 3.17715 3.83198 4.10611 4.33034 4.44688 4.49691 4.66847 4.75534 4.98145 5.12601 5.24062 5.26541 5.34261 5.44822 5.60081 5.61924 5.73671 5.87588 6.18440 6.25358 6.28005 6.84949 7.42582 8.91646 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.022966 B = 0.012845 C = 0.009120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.914782 B = 2179.294125 C = 3069.362159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.016 3.984 3 Si 0.950 3.050 4 H -0.274 1.274 5 H -0.289 1.289 6 H -0.269 1.269 7 C -0.520 4.520 8 H 0.061 0.939 9 C 0.064 3.936 10 H 0.002 0.998 11 C -0.112 4.112 12 C -0.062 4.062 13 C -0.123 4.123 14 C -0.107 4.107 15 C -0.133 4.133 16 C -0.060 4.060 17 Cl -0.088 7.088 18 C -0.101 4.101 19 C -0.053 4.053 20 H 0.260 0.740 21 H 0.071 0.929 22 H 0.065 0.935 23 H 0.093 0.907 24 H 0.075 0.925 25 H 0.155 0.845 26 H 0.150 0.850 27 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.671 -6.723 5.990 9.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.184 4.184 3 Si 0.776 3.224 4 H -0.199 1.199 5 H -0.215 1.215 6 H -0.193 1.193 7 C -0.558 4.558 8 H 0.079 0.921 9 C 0.046 3.954 10 H 0.020 0.980 11 C -0.149 4.149 12 C -0.098 4.098 13 C -0.123 4.123 14 C -0.125 4.125 15 C -0.151 4.151 16 C -0.086 4.086 17 Cl -0.059 7.059 18 C -0.120 4.120 19 C -0.054 4.054 20 H 0.069 0.931 21 H 0.090 0.910 22 H 0.084 0.916 23 H 0.112 0.888 24 H 0.093 0.907 25 H 0.173 0.827 26 H 0.168 0.832 27 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.394 -6.533 6.019 8.892 hybrid contribution -0.165 1.517 -0.204 1.539 sum 0.228 -5.016 5.815 7.683 Atomic orbital electron populations 1.69950 1.06968 1.26943 1.50101 1.25716 0.95674 1.02227 0.94760 0.85668 0.78770 0.79701 0.78228 1.19923 1.21528 1.19316 1.21382 0.92942 0.90821 1.50637 0.92096 1.18482 0.92465 0.94212 0.90284 0.97990 1.22322 0.99528 0.97034 0.96015 1.20903 0.93513 1.01147 0.94266 1.21128 0.97899 0.98325 0.94942 1.20726 0.95281 1.01080 0.95408 1.21002 0.96135 0.98185 0.99820 1.20997 0.89775 1.01284 0.96576 1.98286 1.32256 1.83409 1.91938 1.21127 0.96710 0.98782 0.95420 1.21220 0.92204 0.92640 0.99315 0.93101 0.91048 0.91587 0.88835 0.90679 0.82729 0.83242 0.85400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.91 9.98 21.45 0.21 -50.69 15 2 C 0.02 0.88 5.34 84.65 0.45 1.33 15 3 Si 0.95 43.38 29.54 68.60 2.03 45.41 15 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 15 5 H -0.29 -13.27 7.11 99.48 0.71 -12.56 15 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 15 7 C -0.52 -27.81 8.49 25.60 0.22 -27.59 15 8 H 0.06 3.16 7.59 -2.91 -0.02 3.14 15 9 C 0.06 3.16 2.79 -11.52 -0.03 3.13 15 10 H 0.00 0.11 8.14 -2.38 -0.02 0.09 15 11 C -0.11 -4.27 6.57 31.51 0.21 -4.07 15 12 C -0.06 -2.08 6.76 30.52 0.21 -1.88 15 13 C -0.12 -4.83 6.14 -19.59 -0.12 -4.95 15 14 C -0.11 -3.57 10.04 22.30 0.22 -3.35 15 15 C -0.13 -4.58 9.83 22.27 0.22 -4.36 15 16 C -0.06 -2.45 6.32 22.30 0.14 -2.31 15 17 Cl -0.09 -3.18 28.96 -2.72 -0.08 -3.25 15 18 C -0.10 -4.88 8.75 22.32 0.20 -4.68 15 19 C -0.05 -2.51 5.17 -19.50 -0.10 -2.61 15 20 H 0.26 14.19 8.31 -92.71 -0.77 13.42 15 21 H 0.07 2.63 7.75 -2.39 -0.02 2.61 15 22 H 0.07 2.26 8.14 -2.38 -0.02 2.24 15 23 H 0.09 2.48 8.14 -2.39 -0.02 2.46 15 24 H 0.07 2.51 8.14 -2.39 -0.02 2.49 15 25 H 0.16 3.84 8.06 -2.91 -0.02 3.82 15 26 H 0.15 4.11 8.06 -2.91 -0.02 4.09 15 27 H 0.13 6.87 6.08 -2.91 -0.02 6.85 15 Total: -1.00 -58.79 244.41 4.94 -53.86 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: 1.17 Total: 6.02 kcal Atomic # 6 Polarization: -52.94 SS G_CDS: 1.61 Total: -51.34 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: 0.21 Total: -50.69 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 17 Polarization: -3.18 SS G_CDS: -0.08 Total: -3.25 kcal Total: -58.79 4.94 -53.86 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084352462.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.586 kcal (2) G-P(sol) polarization free energy of solvation -58.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds