Wall clock time and date at job start Mon Mar 30 2020 02:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31082 * 1 3 3 Si 1.86801 * 120.00193 * 2 1 4 4 H 1.48500 * 109.46937 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47136 * 300.00054 * 3 2 1 6 6 H 1.48499 * 109.47103 * 60.00227 * 3 2 1 7 7 C 1.39725 * 120.00007 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00004 * 199.20743 * 7 2 1 9 9 C 1.40835 * 119.99957 * 19.20344 * 7 2 1 10 10 C 1.39132 * 126.99416 * 210.49625 * 9 7 2 11 11 Cl 1.73607 * 125.39668 * 359.97438 * 10 9 7 12 12 N 1.35852 * 109.21035 * 179.44292 * 10 9 7 13 13 H 0.96999 * 124.63705 * 179.97438 * 12 10 9 14 14 C 1.37965 * 110.72389 * 0.70372 * 12 10 9 15 15 N 1.32687 * 132.51680 * 179.20583 * 14 12 10 16 16 C 1.31662 * 121.73835 * 180.02562 * 15 14 12 17 17 C 1.38501 * 121.53870 * 359.97438 * 16 15 14 18 18 C 1.38454 * 119.27855 * 0.02562 * 17 16 15 19 19 C 1.39273 * 118.07710 * 0.27448 * 18 17 16 20 20 H 0.97002 * 119.99923 * 359.97438 * 1 2 3 21 21 H 1.08011 * 119.22886 * 179.97438 * 16 15 14 22 22 H 1.08001 * 120.36129 * 179.97438 * 17 16 15 23 23 H 1.08003 * 120.96111 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3108 0.0000 0.0000 3 14 2.2449 1.6177 0.0000 4 1 3.7049 1.3463 -0.0006 5 1 1.8862 2.3964 -1.2125 6 1 1.8862 2.3964 1.2125 7 6 2.0094 -1.2101 -0.0005 8 1 3.0443 -1.2362 0.3072 9 6 1.3640 -2.3956 -0.4023 10 6 1.6259 -3.6855 0.0487 11 17 2.8282 -4.1148 1.2252 12 7 0.7837 -4.5545 -0.5687 13 1 0.7736 -5.5128 -0.4192 14 6 -0.0443 -3.8895 -1.4494 15 7 -0.9995 -4.3062 -2.2707 16 6 -1.6704 -3.4691 -3.0341 17 6 -1.4127 -2.1084 -3.0179 18 6 -0.4265 -1.6159 -2.1802 19 6 0.2731 -2.5224 -1.3875 20 1 -0.4850 0.8401 0.0004 21 1 -2.4396 -3.8526 -3.6882 22 1 -1.9744 -1.4389 -3.6525 23 1 -0.2034 -0.5597 -2.1456 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095937206.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:03 Heat of formation + Delta-G solvation = 52.686395 kcal Electronic energy + Delta-G solvation = -12555.807309 eV Core-core repulsion = 10202.074256 eV Total energy + Delta-G solvation = -2353.733053 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.025 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.05508 -36.63930 -35.22099 -33.93036 -31.32933 -29.34992 -28.18995 -24.98425 -22.43305 -21.36883 -19.64076 -17.41376 -16.41031 -15.63180 -14.96836 -14.79525 -13.92070 -13.76505 -12.83152 -12.46924 -12.09904 -11.80811 -11.53839 -11.41264 -11.11788 -10.53274 -10.28839 -10.17712 -9.98517 -9.23609 -8.98659 -8.37325 -7.33718 -6.97292 -6.62394 -4.24595 2.11722 2.42597 2.94970 2.98179 3.10818 3.16933 3.81848 3.97273 4.36338 4.86208 5.23203 5.49316 5.85790 6.15659 6.25235 6.31431 6.77285 6.89730 7.14165 7.31983 7.52285 7.71935 7.98699 8.31351 8.42916 8.73651 8.86923 9.05762 10.23776 Molecular weight = 222.03amu Principal moments of inertia in cm(-1) A = 0.021279 B = 0.015270 C = 0.009188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.532864 B = 1833.279261 C = 3046.699110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.080 3.920 3 Si 0.904 3.096 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.276 1.276 7 C -0.446 4.446 8 H 0.085 0.915 9 C 0.111 3.889 10 C -0.079 4.079 11 Cl -0.060 7.060 12 N -0.571 5.571 13 H 0.399 0.601 14 C 0.291 3.709 15 N -0.530 5.530 16 C 0.126 3.874 17 C -0.255 4.255 18 C 0.027 3.973 19 C -0.141 4.141 20 H 0.279 0.721 21 H 0.142 0.858 22 H 0.117 0.883 23 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.008 -1.162 -2.463 2.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.137 4.137 3 Si 0.729 3.271 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.201 1.201 7 C -0.477 4.477 8 H 0.103 0.897 9 C 0.103 3.897 10 C -0.207 4.207 11 Cl -0.032 7.032 12 N -0.181 5.181 13 H 0.234 0.766 14 C 0.056 3.944 15 N -0.246 5.246 16 C -0.039 4.039 17 C -0.278 4.278 18 C 0.001 3.999 19 C -0.150 4.150 20 H 0.089 0.911 21 H 0.159 0.841 22 H 0.135 0.865 23 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.148 -2.040 -2.215 3.015 hybrid contribution 0.524 1.056 0.297 1.216 sum 0.376 -0.983 -1.919 2.188 Atomic orbital electron populations 1.69993 1.07336 1.29035 1.36363 1.25766 0.94624 1.00863 0.92459 0.86318 0.81148 0.81155 0.78476 1.18391 1.19795 1.20122 1.18686 0.98515 0.90092 1.40425 0.89681 1.17640 0.91182 0.89583 0.91291 1.20354 1.03292 0.89610 1.07415 1.98221 1.54414 1.93685 1.56862 1.40510 1.31737 1.08254 1.37648 0.76636 1.18170 0.93262 0.89445 0.93513 1.66321 1.09078 1.40268 1.08932 1.21984 0.96638 0.89768 0.95497 1.21597 1.03785 0.96540 1.05915 1.21019 0.90121 0.99492 0.89224 1.19745 1.02103 0.92003 1.01127 0.91058 0.84106 0.86466 0.85247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.93 10.25 55.54 0.57 -19.36 14 2 C 0.08 1.93 4.94 -17.32 -0.09 1.85 14 3 Si 0.90 18.25 29.60 -169.99 -5.03 13.22 14 4 H -0.26 -5.25 7.11 56.52 0.40 -4.85 14 5 H -0.27 -5.38 7.11 56.52 0.40 -4.98 14 6 H -0.28 -5.54 7.11 56.52 0.40 -5.13 14 7 C -0.45 -11.47 9.11 -38.04 -0.35 -11.82 14 8 H 0.09 2.15 7.91 -52.49 -0.42 1.73 14 9 C 0.11 2.88 5.73 -104.79 -0.60 2.28 14 10 C -0.08 -1.88 7.85 -15.44 -0.12 -2.00 14 11 Cl -0.06 -1.23 29.09 -51.86 -1.51 -2.74 14 12 N -0.57 -12.75 5.98 -8.42 -0.05 -12.80 14 13 H 0.40 7.66 8.96 -40.82 -0.37 7.29 14 14 C 0.29 6.93 8.39 -155.27 -1.30 5.63 14 15 N -0.53 -11.69 10.39 -12.24 -0.13 -11.81 14 16 C 0.13 2.43 11.14 -17.53 -0.20 2.24 14 17 C -0.25 -4.98 10.11 -39.40 -0.40 -5.38 14 18 C 0.03 0.63 8.85 -39.12 -0.35 0.28 14 19 C -0.14 -3.54 5.78 -104.87 -0.61 -4.14 14 20 H 0.28 6.34 8.30 -40.82 -0.34 6.00 14 21 H 0.14 2.13 8.06 -52.48 -0.42 1.70 14 22 H 0.12 1.89 8.06 -52.49 -0.42 1.46 14 23 H 0.13 2.98 6.37 -52.48 -0.33 2.64 14 LS Contribution 226.20 15.07 3.41 3.41 Total: -1.00 -27.44 226.20 -7.84 -35.28 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -1.10 Total: 5.87 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: -4.00 Total: -11.06 kcal Atomic # 7 Polarization: -44.37 SS G_CDS: 0.39 Total: -43.98 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.22 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -1.51 Total: -2.74 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -27.44 -7.84 -35.28 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095937206.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.964 kcal (2) G-P(sol) polarization free energy of solvation -27.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds