Wall clock time and date at job start Mon Mar 30 2020 02:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31082 * 1 3 3 Si 1.86801 * 120.00193 * 2 1 4 4 H 1.48500 * 109.46937 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47136 * 300.00054 * 3 2 1 6 6 H 1.48499 * 109.47103 * 60.00227 * 3 2 1 7 7 C 1.39725 * 120.00007 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00004 * 199.20743 * 7 2 1 9 9 C 1.40835 * 119.99957 * 19.20344 * 7 2 1 10 10 C 1.39132 * 126.99416 * 210.49625 * 9 7 2 11 11 Cl 1.73607 * 125.39668 * 359.97438 * 10 9 7 12 12 N 1.35852 * 109.21035 * 179.44292 * 10 9 7 13 13 H 0.96999 * 124.63705 * 179.97438 * 12 10 9 14 14 C 1.37965 * 110.72389 * 0.70372 * 12 10 9 15 15 N 1.32687 * 132.51680 * 179.20583 * 14 12 10 16 16 C 1.31662 * 121.73835 * 180.02562 * 15 14 12 17 17 C 1.38501 * 121.53870 * 359.97438 * 16 15 14 18 18 C 1.38454 * 119.27855 * 0.02562 * 17 16 15 19 19 C 1.39273 * 118.07710 * 0.27448 * 18 17 16 20 20 H 0.97002 * 119.99923 * 359.97438 * 1 2 3 21 21 H 1.08011 * 119.22886 * 179.97438 * 16 15 14 22 22 H 1.08001 * 120.36129 * 179.97438 * 17 16 15 23 23 H 1.08003 * 120.96111 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3108 0.0000 0.0000 3 14 2.2449 1.6177 0.0000 4 1 3.7049 1.3463 -0.0006 5 1 1.8862 2.3964 -1.2125 6 1 1.8862 2.3964 1.2125 7 6 2.0094 -1.2101 -0.0005 8 1 3.0443 -1.2362 0.3072 9 6 1.3640 -2.3956 -0.4023 10 6 1.6259 -3.6855 0.0487 11 17 2.8282 -4.1148 1.2252 12 7 0.7837 -4.5545 -0.5687 13 1 0.7736 -5.5128 -0.4192 14 6 -0.0443 -3.8895 -1.4494 15 7 -0.9995 -4.3062 -2.2707 16 6 -1.6704 -3.4691 -3.0341 17 6 -1.4127 -2.1084 -3.0179 18 6 -0.4265 -1.6159 -2.1802 19 6 0.2731 -2.5224 -1.3875 20 1 -0.4850 0.8401 0.0004 21 1 -2.4396 -3.8526 -3.6882 22 1 -1.9744 -1.4389 -3.6525 23 1 -0.2034 -0.5597 -2.1456 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095937206.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:03 Heat of formation + Delta-G solvation = 37.036832 kcal Electronic energy + Delta-G solvation = -12556.485925 eV Core-core repulsion = 10202.074256 eV Total energy + Delta-G solvation = -2354.411669 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.025 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.77415 -38.33098 -36.95101 -35.72770 -33.05052 -31.11844 -29.89574 -26.80869 -24.14152 -23.04232 -21.44778 -19.17432 -18.22144 -17.30651 -16.66976 -16.45993 -15.66546 -15.39441 -14.53844 -14.16180 -13.82629 -13.51629 -13.21252 -13.10900 -12.72608 -12.25242 -11.97004 -11.87977 -11.69001 -11.00444 -10.74358 -10.06351 -9.02720 -8.78431 -8.41468 -6.11810 0.40669 0.75702 1.17336 1.37285 1.46276 1.59317 2.04538 2.30009 2.67646 3.11085 3.43074 3.95322 4.28844 4.51197 4.61725 4.66969 5.08539 5.20139 5.36808 5.59581 5.83711 5.98292 6.21122 6.54910 6.65930 6.91612 7.02200 7.38267 8.47107 Molecular weight = 222.03amu Principal moments of inertia in cm(-1) A = 0.021279 B = 0.015270 C = 0.009188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.532864 B = 1833.279261 C = 3046.699110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.046 3.954 3 Si 0.972 3.028 4 H -0.263 1.263 5 H -0.263 1.263 6 H -0.271 1.271 7 C -0.477 4.477 8 H 0.077 0.923 9 C 0.072 3.928 10 C -0.083 4.083 11 Cl -0.038 7.038 12 N -0.566 5.566 13 H 0.411 0.589 14 C 0.271 3.729 15 N -0.538 5.538 16 C 0.132 3.868 17 C -0.241 4.241 18 C 0.008 3.992 19 C -0.176 4.176 20 H 0.285 0.715 21 H 0.192 0.808 22 H 0.158 0.842 23 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.845 -0.884 -3.470 3.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.169 4.169 3 Si 0.794 3.206 4 H -0.186 1.186 5 H -0.188 1.188 6 H -0.196 1.196 7 C -0.509 4.509 8 H 0.095 0.905 9 C 0.065 3.935 10 C -0.212 4.212 11 Cl -0.010 7.010 12 N -0.178 5.178 13 H 0.248 0.752 14 C 0.037 3.963 15 N -0.255 5.255 16 C -0.033 4.033 17 C -0.264 4.264 18 C -0.018 4.018 19 C -0.185 4.185 20 H 0.096 0.904 21 H 0.209 0.791 22 H 0.175 0.825 23 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.989 -1.792 -3.221 3.816 hybrid contribution 0.703 0.887 0.560 1.262 sum -0.286 -0.905 -2.661 2.825 Atomic orbital electron populations 1.70035 1.08483 1.30132 1.36812 1.26455 0.95315 1.03468 0.91638 0.85309 0.79501 0.77049 0.78769 1.18645 1.18752 1.19645 1.18817 0.98410 0.91307 1.42333 0.90522 1.18048 0.92542 0.90522 0.92438 1.20585 1.03449 0.89765 1.07403 1.98214 1.53435 1.93464 1.55887 1.40440 1.31283 1.08741 1.37316 0.75178 1.18408 0.94120 0.89336 0.94386 1.66472 1.08897 1.40969 1.09121 1.22881 0.96311 0.89618 0.94530 1.22037 1.02207 0.97493 1.04623 1.21158 0.91430 0.99016 0.90235 1.20021 1.03021 0.93279 1.02170 0.90425 0.79117 0.82459 0.86154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -41.58 10.25 21.80 0.22 -41.36 14 2 C 0.05 2.23 4.94 85.16 0.42 2.65 14 3 Si 0.97 37.60 29.60 68.60 2.03 39.63 14 4 H -0.26 -10.13 7.11 99.48 0.71 -9.43 14 5 H -0.26 -9.66 7.11 99.48 0.71 -8.95 14 6 H -0.27 -10.21 7.11 99.48 0.71 -9.50 14 7 C -0.48 -25.18 9.11 23.27 0.21 -24.97 14 8 H 0.08 4.00 7.91 -2.91 -0.02 3.98 14 9 C 0.07 3.85 5.73 -19.97 -0.11 3.74 14 10 C -0.08 -4.02 7.85 84.29 0.66 -3.36 14 11 Cl -0.04 -1.57 29.09 -2.72 -0.08 -1.65 14 12 N -0.57 -25.31 5.98 -180.54 -1.08 -26.39 14 13 H 0.41 15.67 8.96 -92.71 -0.83 14.84 14 14 C 0.27 12.84 8.39 133.66 1.12 13.96 14 15 N -0.54 -22.71 10.39 -192.62 -2.00 -24.71 14 16 C 0.13 4.62 11.14 84.78 0.94 5.56 14 17 C -0.24 -8.73 10.11 22.38 0.23 -8.50 14 18 C 0.01 0.36 8.85 22.57 0.20 0.56 14 19 C -0.18 -8.92 5.78 -20.03 -0.12 -9.04 14 20 H 0.29 12.99 8.30 -92.71 -0.77 12.22 14 21 H 0.19 4.71 8.06 -2.90 -0.02 4.69 14 22 H 0.16 4.36 8.06 -2.91 -0.02 4.34 14 23 H 0.12 5.57 6.37 -2.91 -0.02 5.55 14 Total: -1.00 -59.24 226.20 3.08 -56.16 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 0.43 Total: 17.73 kcal Atomic # 6 Polarization: -22.96 SS G_CDS: 3.56 Total: -19.40 kcal Atomic # 7 Polarization: -89.60 SS G_CDS: -2.86 Total: -92.46 kcal Atomic # 14 Polarization: 37.60 SS G_CDS: 2.03 Total: 39.63 kcal Atomic # 17 Polarization: -1.57 SS G_CDS: -0.08 Total: -1.65 kcal Total: -59.24 3.08 -56.16 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095937206.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.192 kcal (2) G-P(sol) polarization free energy of solvation -59.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds