Wall clock time and date at job start Mon Mar 30 2020 03:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.50703 * 109.47167 * 3.84180 * 3 2 1 5 5 C 1.33386 * 125.20043 * 89.99985 * 4 3 2 6 6 C 1.38429 * 114.91891 * 179.97438 * 5 4 3 7 7 C 1.50706 * 122.53792 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.47017 * 19.99344 * 7 6 5 9 9 N 1.46899 * 109.46970 * 139.99513 * 7 6 5 10 10 C 1.50703 * 109.46488 * 259.99623 * 7 6 5 11 11 H 1.08002 * 120.00483 * 359.97438 * 10 7 6 12 12 C 1.37880 * 119.99405 * 180.02562 * 10 7 6 13 13 N 1.31513 * 120.00271 * 359.97438 * 12 10 7 14 14 Si 1.86800 * 119.99608 * 179.97438 * 12 10 7 15 15 H 1.48502 * 109.47334 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.46900 * 120.00191 * 14 12 10 17 17 H 1.48500 * 109.47300 * 239.99685 * 14 12 10 18 18 C 1.33387 * 114.92250 * 359.97438 * 6 5 4 19 19 S 1.75880 * 125.20378 * 269.69535 * 4 3 2 20 20 H 1.09001 * 109.47046 * 123.83988 * 3 2 1 21 21 H 1.08996 * 109.47366 * 243.84392 * 3 2 1 22 22 H 1.07997 * 122.54296 * 359.95309 * 5 4 3 23 23 H 1.00902 * 110.99725 * 60.00336 * 9 7 6 24 24 H 1.00894 * 110.99597 * 183.94587 * 9 7 6 25 25 H 0.96998 * 119.99767 * 180.02562 * 13 12 10 26 26 H 1.07996 * 125.20539 * 179.97438 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1110 -1.4168 -0.0952 5 6 3.3676 -2.0669 -1.2313 6 6 3.8227 -3.3643 -1.0708 7 6 4.1652 -4.2535 -2.2384 8 1 4.3423 -3.6405 -3.1222 9 7 5.3755 -5.0256 -1.9274 10 6 3.0209 -5.1978 -2.5031 11 1 2.1346 -5.1584 -1.8872 12 6 3.1060 -6.1129 -3.5310 13 7 4.1855 -6.1612 -4.2807 14 14 1.6880 -7.2839 -3.8586 15 1 0.5987 -7.0276 -2.8825 16 1 1.1777 -7.0699 -5.2367 17 1 2.1602 -8.6848 -3.7178 18 6 3.9362 -3.7676 0.1956 19 16 3.4566 -2.4641 1.2748 20 1 2.9710 0.5731 -0.8536 21 1 2.9711 0.4538 0.9224 22 1 3.2303 -1.6155 -2.2027 23 1 5.2366 -5.6025 -1.1113 24 1 5.6627 -5.5819 -2.7186 25 1 4.2451 -6.8047 -5.0040 26 1 4.2738 -4.7440 0.5102 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104491950.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:13 Heat of formation + Delta-G solvation = 49.269390 kcal Electronic energy + Delta-G solvation = -12222.507610 eV Core-core repulsion = 10006.503185 eV Total energy + Delta-G solvation = -2216.004425 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.052 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.11640 -36.54145 -34.28380 -32.11094 -30.52541 -26.70376 -26.23964 -23.68651 -20.66927 -18.26150 -17.76276 -16.67097 -16.42414 -15.09629 -14.65137 -14.16412 -14.06696 -13.16427 -12.95661 -12.69413 -12.42235 -12.08552 -11.89590 -11.60522 -11.27737 -11.16004 -10.88631 -10.78371 -10.46896 -10.00390 -9.62332 -8.69697 -8.15499 -7.75799 -7.22247 -6.13194 -4.29652 1.46181 2.08595 2.51024 2.84095 2.86552 3.18969 3.28067 3.32346 3.47310 4.17092 4.31398 4.93285 5.10349 5.19234 5.42902 5.83483 6.11253 6.15644 6.53267 6.79080 6.94069 7.06493 7.61401 7.67056 7.71505 8.05381 8.62702 8.88853 9.06746 9.42456 10.84234 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.030891 B = 0.008046 C = 0.007130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.201148 B = 3479.010395 C = 3925.970806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C 0.212 3.788 3 C 0.058 3.942 4 C -0.215 4.215 5 C -0.088 4.088 6 C -0.055 4.055 7 C 0.259 3.741 8 H 0.048 0.952 9 N -0.849 5.849 10 C -0.543 4.543 11 H 0.056 0.944 12 C 0.067 3.933 13 N -0.893 5.893 14 Si 0.895 3.105 15 H -0.273 1.273 16 H -0.282 1.282 17 H -0.283 1.283 18 C -0.190 4.190 19 S 0.047 5.953 20 H 0.124 0.876 21 H 0.115 0.885 22 H 0.138 0.862 23 H 0.310 0.690 24 H 0.356 0.644 25 H 0.265 0.735 26 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.554 8.239 7.557 11.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.114 5.114 2 C -0.106 4.106 3 C 0.016 3.984 4 C -0.332 4.332 5 C -0.121 4.121 6 C -0.066 4.066 7 C 0.147 3.853 8 H 0.066 0.934 9 N -0.378 5.378 10 C -0.583 4.583 11 H 0.074 0.926 12 C -0.136 4.136 13 N -0.532 5.532 14 Si 0.723 3.277 15 H -0.198 1.198 16 H -0.208 1.208 17 H -0.209 1.209 18 C -0.325 4.325 19 S 0.311 5.689 20 H 0.142 0.858 21 H 0.133 0.867 22 H 0.156 0.844 23 H 0.119 0.881 24 H 0.172 0.828 25 H 0.075 0.925 26 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.209 9.023 9.083 12.804 hybrid contribution -0.916 -1.884 -1.993 2.892 sum -0.707 7.139 7.089 10.086 Atomic orbital electron populations 1.81185 1.12981 1.08368 1.08845 1.29140 0.95141 0.93129 0.93211 1.17519 0.81407 0.93339 1.06143 1.23608 1.13878 0.98990 0.96747 1.20158 0.99293 0.94478 0.98186 1.19441 0.97047 0.93967 0.96176 1.17735 0.88202 0.90712 0.88699 0.93410 1.59519 1.35267 1.33029 1.10010 1.21881 1.03206 1.17649 1.15541 0.92574 1.25009 0.96077 0.97311 0.95197 1.69745 1.27270 1.36469 1.19765 0.86479 0.82435 0.80521 0.78261 1.19753 1.20810 1.20904 1.25199 1.10197 1.01974 0.95153 1.83799 1.67472 1.06923 1.10740 0.85835 0.86737 0.84447 0.88070 0.82765 0.92477 0.82389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -7.20 18.54 42.15 0.78 -6.42 15 2 C 0.21 2.85 15.42 -20.76 -0.32 2.53 15 3 C 0.06 0.58 6.20 -30.67 -0.19 0.39 15 4 C -0.21 -3.08 5.72 -36.00 -0.21 -3.28 15 5 C -0.09 -1.53 9.82 -41.21 -0.40 -1.94 15 6 C -0.06 -1.12 4.80 -106.24 -0.51 -1.63 15 7 C 0.26 6.19 3.03 -70.01 -0.21 5.97 15 8 H 0.05 1.25 8.09 -51.93 -0.42 0.83 15 9 N -0.85 -19.45 9.04 -6.65 -0.06 -19.51 15 10 C -0.54 -14.29 8.71 -34.44 -0.30 -14.59 15 11 H 0.06 1.53 7.74 -52.49 -0.41 1.12 15 12 C 0.07 1.76 5.38 -17.82 -0.10 1.66 15 13 N -0.89 -24.08 11.54 55.43 0.64 -23.44 15 14 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 15 15 H -0.27 -6.43 7.11 56.52 0.40 -6.03 15 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 18 C -0.19 -3.49 10.41 29.04 0.30 -3.19 15 19 S 0.05 0.70 23.33 -107.50 -2.51 -1.81 15 20 H 0.12 0.89 8.14 -51.93 -0.42 0.47 15 21 H 0.11 0.81 8.14 -51.93 -0.42 0.38 15 22 H 0.14 2.22 8.06 -52.49 -0.42 1.80 15 23 H 0.31 6.74 7.73 -39.29 -0.30 6.43 15 24 H 0.36 8.79 7.08 -39.29 -0.28 8.51 15 25 H 0.27 6.84 8.31 -40.82 -0.34 6.50 15 26 H 0.16 2.82 7.18 -52.49 -0.38 2.44 15 LS Contribution 253.24 15.07 3.82 3.82 Total: -1.00 -28.96 253.24 -6.47 -35.44 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -2.19 Total: 10.17 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: -1.94 Total: -14.07 kcal Atomic # 7 Polarization: -50.73 SS G_CDS: 1.36 Total: -49.37 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: 0.70 SS G_CDS: -2.51 Total: -1.81 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -28.96 -6.47 -35.44 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104491950.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.706 kcal (2) G-P(sol) polarization free energy of solvation -28.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds