Wall clock time and date at job start Mon Mar 30 2020 02:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30870 * 1 3 3 Si 1.86804 * 119.99897 * 2 1 4 4 H 1.48507 * 109.47011 * 239.99774 * 3 2 1 5 5 H 1.48493 * 109.47404 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47168 * 120.00342 * 3 2 1 7 7 C 1.40067 * 120.00011 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00128 * 180.02562 * 7 2 1 9 9 C 1.39912 * 120.00112 * 359.97438 * 7 2 1 10 10 C 1.38286 * 125.40912 * 179.97438 * 9 7 2 11 11 C 1.36807 * 114.19422 * 179.73192 * 10 9 7 12 12 C 1.50704 * 122.32613 * 180.28375 * 11 10 9 13 13 F 1.39891 * 109.47268 * 180.25193 * 12 11 10 14 14 F 1.39900 * 109.46981 * 300.25391 * 12 11 10 15 15 F 1.39898 * 109.46820 * 60.25166 * 12 11 10 16 16 C 1.34530 * 115.34790 * 0.50043 * 11 10 9 17 17 S 1.75798 * 110.14415 * 359.51594 * 16 11 10 18 18 H 0.97004 * 119.99545 * 359.97438 * 1 2 3 19 19 H 1.07997 * 122.89939 * 359.97438 * 10 9 7 20 20 H 1.08002 * 124.93171 * 179.78963 * 16 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 3.0965 1.6964 -1.2125 5 1 1.2778 2.7465 -0.0006 6 1 3.0965 1.6964 1.2124 7 6 2.0090 -1.2130 -0.0005 8 1 3.0891 -1.2130 -0.0001 9 6 1.3095 -2.4247 -0.0005 10 6 1.8850 -3.6821 -0.0016 11 6 0.9836 -4.7113 0.0045 12 6 1.4107 -6.1565 0.0109 13 9 0.2780 -6.9775 0.0104 14 9 2.1786 -6.4208 -1.1283 15 9 2.1719 -6.4128 1.1563 16 6 -0.3104 -4.3435 -0.0001 17 16 -0.4416 -2.5904 0.0009 18 1 -0.4850 0.8401 0.0004 19 1 2.9536 -3.8382 -0.0029 20 1 -1.1473 -5.0262 0.0003 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000142698515.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:53 Heat of formation + Delta-G solvation = -151.203914 kcal Electronic energy + Delta-G solvation = -12781.910046 eV Core-core repulsion = 9847.229861 eV Total energy + Delta-G solvation = -2934.680185 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.002 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -49.33657 -46.87256 -46.80821 -36.26916 -34.11384 -29.62194 -25.75419 -25.12530 -21.54455 -18.93991 -17.82980 -17.68356 -17.57375 -15.93230 -15.33881 -14.68597 -13.75307 -13.67145 -13.30451 -13.30241 -13.04202 -13.02722 -12.24272 -11.94166 -11.92410 -11.29106 -11.22400 -11.09430 -10.55157 -10.09728 -9.71484 -9.14052 -7.72643 -7.15407 -7.04652 -4.69810 2.38801 2.87180 2.91117 2.92035 3.28555 3.56188 3.63345 3.66835 3.91975 4.80543 4.99536 5.10963 5.37433 6.49579 6.72070 6.95665 7.29827 7.49745 7.71521 7.90736 8.25501 8.39438 9.71188 Molecular weight = 222.00amu Principal moments of inertia in cm(-1) A = 0.055634 B = 0.008611 C = 0.007820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.168452 B = 3250.824144 C = 3579.494998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.051 3.949 3 Si 0.938 3.062 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.260 1.260 7 C -0.383 4.383 8 H 0.097 0.903 9 C 0.034 3.966 10 C -0.328 4.328 11 C -0.120 4.120 12 C 0.516 3.484 13 F -0.191 7.191 14 F -0.189 7.189 15 F -0.189 7.189 16 C -0.371 4.371 17 S 0.170 5.830 18 H 0.300 0.700 19 H 0.109 0.891 20 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.484 -1.272 0.014 1.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.169 4.169 3 Si 0.762 3.238 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.185 1.185 7 C -0.419 4.419 8 H 0.115 0.885 9 C -0.087 4.087 10 C -0.352 4.352 11 C -0.134 4.134 12 C 0.460 3.540 13 F -0.172 7.172 14 F -0.170 7.170 15 F -0.170 7.170 16 C -0.507 4.507 17 S 0.432 5.568 18 H 0.113 0.887 19 H 0.127 0.873 20 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.942 -0.210 0.015 0.965 hybrid contribution 1.600 -0.712 0.003 1.751 sum 0.658 -0.922 0.018 1.133 Atomic orbital electron populations 1.68749 1.07690 1.31006 1.33800 1.26233 0.95132 1.02776 0.92773 0.85809 0.79637 0.78020 0.80363 1.18458 1.19813 1.18457 1.19162 0.95580 0.88564 1.38547 0.88506 1.21731 0.94961 0.95425 0.96551 1.19272 0.97708 0.90233 1.27986 1.18303 0.95134 0.89177 1.10777 1.18595 0.73828 0.88760 0.72825 1.93075 1.52108 1.75752 1.96288 1.93124 1.76657 1.95236 1.52020 1.93124 1.76998 1.95362 1.51548 1.25471 0.97400 1.03830 1.23970 1.84572 1.05482 0.93298 1.73442 0.88724 0.87279 0.84896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.30 10.65 55.56 0.59 -17.71 14 2 C 0.05 1.17 5.50 -17.28 -0.09 1.07 14 3 Si 0.94 16.99 29.56 -169.99 -5.03 11.96 14 4 H -0.26 -4.68 7.11 56.52 0.40 -4.27 14 5 H -0.27 -4.79 7.11 56.52 0.40 -4.38 14 6 H -0.26 -4.67 7.11 56.52 0.40 -4.27 14 7 C -0.38 -9.48 9.29 -38.27 -0.36 -9.83 14 8 H 0.10 2.26 7.85 -52.48 -0.41 1.85 14 9 C 0.03 0.88 6.19 -38.94 -0.24 0.64 14 10 C -0.33 -8.34 9.92 -40.08 -0.40 -8.73 14 11 C -0.12 -2.90 5.24 -106.45 -0.56 -3.46 14 12 C 0.52 11.16 3.38 36.01 0.12 11.28 14 13 F -0.19 -3.90 16.34 2.25 0.04 -3.86 14 14 F -0.19 -3.98 17.27 2.25 0.04 -3.94 14 15 F -0.19 -3.98 17.28 2.25 0.04 -3.94 14 16 C -0.37 -8.81 10.52 29.42 0.31 -8.50 14 17 S 0.17 4.14 20.27 -107.50 -2.18 1.96 14 18 H 0.30 6.27 8.30 -40.82 -0.34 5.93 14 19 H 0.11 2.67 8.06 -52.49 -0.42 2.25 14 20 H 0.13 2.90 7.61 -52.49 -0.40 2.50 14 LS Contribution 214.54 15.07 3.23 3.23 Total: -1.00 -25.39 214.54 -4.85 -30.23 By element: Atomic # 1 Polarization: -0.03 SS G_CDS: -0.37 Total: -0.40 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: -1.22 Total: -17.54 kcal Atomic # 7 Polarization: -18.30 SS G_CDS: 0.59 Total: -17.71 kcal Atomic # 9 Polarization: -11.86 SS G_CDS: 0.11 Total: -11.75 kcal Atomic # 14 Polarization: 16.99 SS G_CDS: -5.03 Total: 11.96 kcal Atomic # 16 Polarization: 4.14 SS G_CDS: -2.18 Total: 1.96 kcal Total LS contribution 3.23 Total: 3.23 kcal Total: -25.39 -4.85 -30.23 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000142698515.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.970 kcal (2) G-P(sol) polarization free energy of solvation -25.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds