Wall clock time and date at job start Mon Mar 30 2020 02:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30695 * 1 3 3 Si 1.86791 * 120.00026 * 2 1 4 4 H 1.48498 * 109.47306 * 270.00240 * 3 2 1 5 5 H 1.48495 * 109.47580 * 30.00028 * 3 2 1 6 6 H 1.48504 * 109.47184 * 150.00396 * 3 2 1 7 7 C 1.40349 * 119.99691 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99994 * 180.02562 * 7 2 1 9 9 C 1.39036 * 120.00190 * 359.97438 * 7 2 1 10 10 N 1.37429 * 127.46399 * 359.97287 * 9 7 2 11 11 H 0.97007 * 124.14564 * 0.02562 * 10 9 7 12 12 N 1.28252 * 111.70398 * 179.97438 * 10 9 7 13 13 C 1.32310 * 112.91001 * 0.02562 * 12 10 9 14 14 C 1.40839 * 135.15964 * 179.97438 * 13 12 10 15 15 C 1.36148 * 119.68234 * 180.02562 * 14 13 12 16 16 C 1.39205 * 121.79074 * 0.02562 * 15 14 13 17 17 Cl 1.73601 * 119.38304 * 179.69981 * 16 15 14 18 18 C 1.37946 * 121.22930 * 359.97438 * 16 15 14 19 19 C 1.38953 * 119.36396 * 359.97438 * 18 16 15 20 20 H 0.97003 * 120.00161 * 359.97438 * 1 2 3 21 21 H 1.08004 * 120.16399 * 359.97438 * 14 13 12 22 22 H 1.08002 * 119.10652 * 180.02562 * 15 14 13 23 23 H 1.08009 * 120.31491 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 2.4884 2.0464 -1.4000 5 1 1.4385 2.6526 0.7000 6 1 3.5385 1.4401 0.7000 7 6 2.0086 -1.2155 -0.0005 8 1 3.0887 -1.2156 -0.0001 9 6 1.3134 -2.4196 -0.0005 10 7 -0.0492 -2.5981 0.0005 11 1 -0.6934 -1.8727 0.0009 12 7 -0.3647 -3.8412 -0.0004 13 6 0.6898 -4.6402 -0.0015 14 6 0.8861 -6.0349 -0.0022 15 6 2.1513 -6.5377 -0.0028 16 6 3.2698 -5.7090 -0.0021 17 17 4.8547 -6.4173 0.0050 18 6 3.1422 -4.3354 -0.0014 19 6 1.8734 -3.7690 -0.0018 20 1 -0.4850 0.8401 0.0004 21 1 0.0370 -6.7024 -0.0015 22 1 2.2910 -7.6086 -0.0038 23 1 4.0202 -3.7064 -0.0005 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000164027195.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:45 Heat of formation + Delta-G solvation = 48.701691 kcal Electronic energy + Delta-G solvation = -12258.582731 eV Core-core repulsion = 9904.676888 eV Total energy + Delta-G solvation = -2353.905843 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.025 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.23168 -36.59721 -35.09490 -34.31210 -30.84273 -29.10673 -28.69102 -25.42327 -22.87208 -20.81802 -19.85044 -17.94963 -16.52107 -15.55527 -15.40578 -14.53315 -13.78902 -13.41977 -13.05629 -12.73853 -12.02338 -11.85634 -11.80986 -11.68185 -11.17400 -10.87243 -10.42935 -10.21008 -9.94121 -9.91923 -8.82528 -8.68312 -7.59057 -7.50405 -6.95903 -4.75837 1.93763 2.60803 2.75956 2.82110 2.87317 3.23997 3.47590 3.61402 4.65537 4.73567 5.01314 5.56961 5.83527 6.24708 6.30733 6.47434 6.56792 6.61552 7.17204 7.26056 7.39018 7.44190 7.70906 7.87658 8.09785 8.13787 8.96460 9.45688 9.90652 Molecular weight = 222.03amu Principal moments of inertia in cm(-1) A = 0.035875 B = 0.008625 C = 0.006970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.299981 B = 3245.601848 C = 4016.058684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.065 3.935 3 Si 0.946 3.054 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.254 1.254 7 C -0.399 4.399 8 H 0.108 0.892 9 C 0.241 3.759 10 N -0.404 5.404 11 H 0.446 0.554 12 N -0.400 5.400 13 C 0.099 3.901 14 C -0.137 4.137 15 C -0.068 4.068 16 C -0.159 4.159 17 Cl -0.122 7.122 18 C 0.019 3.981 19 C -0.270 4.270 20 H 0.302 0.698 21 H 0.111 0.889 22 H 0.110 0.890 23 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.630 -0.039 -0.002 3.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.155 4.155 3 Si 0.768 3.232 4 H -0.186 1.186 5 H -0.195 1.195 6 H -0.177 1.177 7 C -0.435 4.435 8 H 0.126 0.874 9 C 0.113 3.887 10 N -0.121 5.121 11 H 0.300 0.700 12 N -0.229 5.229 13 C -0.054 4.054 14 C -0.159 4.159 15 C -0.091 4.091 16 C -0.188 4.188 17 Cl -0.094 7.094 18 C -0.002 4.002 19 C -0.279 4.279 20 H 0.115 0.885 21 H 0.129 0.871 22 H 0.128 0.872 23 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 2.255 0.005 0.005 2.255 hybrid contribution 0.916 1.048 -0.005 1.392 sum 3.171 1.053 0.000 3.342 Atomic orbital electron populations 1.68677 1.08351 1.31959 1.35052 1.26331 0.95043 1.03147 0.90945 0.85637 0.80088 0.77518 0.79929 1.18624 1.19543 1.17714 1.19006 0.96132 0.87785 1.40578 0.87404 1.19858 0.83981 0.92136 0.92720 1.44222 1.06079 1.04953 1.56871 0.70018 1.72724 1.25737 0.90628 1.33854 1.20311 0.89714 0.93905 1.01507 1.19338 0.95565 0.90893 1.10090 1.19936 0.90857 0.97909 1.00388 1.19808 0.83474 0.92200 1.23290 1.98237 1.28217 1.84843 1.98134 1.19733 0.95146 0.91822 0.93493 1.20138 0.93600 0.91995 1.22216 0.88537 0.87122 0.87198 0.87143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -17.54 10.74 55.57 0.60 -16.94 14 2 C 0.07 1.38 5.50 -17.24 -0.09 1.29 14 3 Si 0.95 15.82 29.56 -169.99 -5.03 10.80 14 4 H -0.26 -4.35 7.11 56.52 0.40 -3.95 14 5 H -0.27 -4.43 7.11 56.52 0.40 -4.03 14 6 H -0.25 -4.21 7.11 56.52 0.40 -3.81 14 7 C -0.40 -9.29 9.37 -38.49 -0.36 -9.65 14 8 H 0.11 2.33 7.85 -52.48 -0.41 1.92 14 9 C 0.24 6.12 6.97 -81.91 -0.57 5.55 14 10 N -0.40 -10.30 6.55 33.50 0.22 -10.08 14 11 H 0.45 10.86 6.26 -190.56 -1.19 9.67 14 12 N -0.40 -10.43 12.07 33.19 0.40 -10.03 14 13 C 0.10 2.50 7.51 -83.14 -0.62 1.87 14 14 C -0.14 -2.98 10.09 -39.35 -0.40 -3.38 14 15 C -0.07 -1.38 9.65 -39.97 -0.39 -1.76 14 16 C -0.16 -3.30 6.32 -39.33 -0.25 -3.55 14 17 Cl -0.12 -2.18 28.91 -51.86 -1.50 -3.68 14 18 C 0.02 0.41 9.85 -39.42 -0.39 0.03 14 19 C -0.27 -6.75 6.63 -102.95 -0.68 -7.43 14 20 H 0.30 5.79 8.29 -40.82 -0.34 5.45 14 21 H 0.11 2.15 8.06 -52.48 -0.42 1.73 14 22 H 0.11 1.89 8.06 -52.49 -0.42 1.47 14 23 H 0.11 2.26 8.06 -52.48 -0.42 1.84 14 LS Contribution 227.61 15.07 3.43 3.43 Total: -1.00 -25.62 227.61 -7.64 -33.26 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -2.01 Total: 10.28 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: -3.75 Total: -17.03 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: 1.22 Total: -37.05 kcal Atomic # 14 Polarization: 15.82 SS G_CDS: -5.03 Total: 10.80 kcal Atomic # 17 Polarization: -2.18 SS G_CDS: -1.50 Total: -3.68 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -25.62 -7.64 -33.26 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164027195.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.959 kcal (2) G-P(sol) polarization free energy of solvation -25.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds