Wall clock time and date at job start Mon Mar 30 2020 02:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30521 * 1 3 3 Si 1.86810 * 119.99985 * 2 1 4 4 H 1.48496 * 109.46947 * 270.00382 * 3 2 1 5 5 H 1.48501 * 109.46942 * 29.99974 * 3 2 1 6 6 H 1.48494 * 109.46975 * 150.00406 * 3 2 1 7 7 C 1.40460 * 120.00458 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00498 * 179.97438 * 7 2 1 9 9 C 1.41025 * 119.99538 * 359.97438 * 7 2 1 10 10 O 1.21429 * 120.00189 * 359.97438 * 9 7 2 11 11 C 1.50704 * 119.99924 * 180.02562 * 9 7 2 12 12 S 1.81394 * 109.47167 * 179.97438 * 11 9 7 13 13 C 1.76199 * 103.00056 * 180.02562 * 12 11 9 14 14 C 1.38975 * 120.07816 * 180.02562 * 13 12 11 15 15 C 1.38086 * 119.91892 * 179.97438 * 14 13 12 16 16 C 1.38310 * 120.07752 * 359.97438 * 15 14 13 17 17 C 1.38301 * 120.16067 * 0.02562 * 16 15 14 18 18 C 1.38081 * 120.08205 * 359.97438 * 17 16 15 19 19 H 0.96992 * 119.99914 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.46878 * 59.99851 * 11 9 7 21 21 H 1.09004 * 109.47053 * 299.99798 * 11 9 7 22 22 H 1.07995 * 120.04427 * 359.69664 * 14 13 12 23 23 H 1.08000 * 119.96089 * 179.97438 * 15 14 13 24 24 H 1.07995 * 119.91521 * 179.97438 * 16 15 14 25 25 H 1.07996 * 119.95950 * 179.97438 * 17 16 15 26 26 H 1.07997 * 120.04201 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2393 1.6178 0.0000 4 1 2.4866 2.0465 -1.4000 5 1 1.4367 2.6527 0.7000 6 1 3.5368 1.4402 0.6999 7 6 2.0076 -1.2164 -0.0005 8 1 3.0876 -1.2164 -0.0010 9 6 1.3025 -2.4377 -0.0005 10 8 0.0882 -2.4377 0.0004 11 6 2.0560 -3.7428 -0.0005 12 16 0.8773 -5.1216 0.0002 13 6 1.9247 -6.5385 0.0009 14 6 1.3716 -7.8134 0.0010 15 6 2.1955 -8.9216 0.0010 16 6 3.5696 -8.7637 0.0004 17 6 4.1234 -7.4964 0.0002 18 6 3.3058 -6.3838 0.0002 19 1 -0.4849 0.8400 0.0004 20 1 2.6827 -3.8005 0.8894 21 1 2.6827 -3.8005 -0.8906 22 1 0.2988 -7.9375 0.0057 23 1 1.7665 -9.9127 0.0016 24 1 4.2115 -9.6322 0.0008 25 1 5.1968 -7.3770 0.0001 26 1 3.7389 -5.3945 0.0005 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000165974296.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:56 Heat of formation + Delta-G solvation = -23.244638 kcal Electronic energy + Delta-G solvation = -11956.405818 eV Core-core repulsion = 9704.964198 eV Total energy + Delta-G solvation = -2251.441620 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.046 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.65350 -36.83157 -32.77346 -31.05167 -30.70908 -29.16106 -26.20669 -22.53015 -22.33478 -19.89083 -17.56299 -16.35242 -15.86067 -15.25983 -14.74756 -14.27140 -13.84941 -13.81602 -13.28792 -12.76196 -12.71098 -12.59854 -11.53446 -11.38954 -11.10115 -10.83461 -10.72590 -10.45666 -10.33535 -9.45455 -9.42875 -9.02696 -8.81563 -7.60197 -6.82672 -6.39230 -5.04114 1.44874 1.54373 2.16108 2.99541 3.08419 3.12043 3.20498 3.90674 3.95546 4.09018 5.03243 5.08082 5.24015 5.24634 5.56282 5.69214 5.92434 5.97164 6.15431 6.18489 6.37974 6.52972 6.55939 6.64652 7.09247 7.14641 7.93958 8.65426 8.71147 10.18408 10.40803 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.064451 B = 0.006002 C = 0.005507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.334210 B = 4663.879590 C = 5083.070436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.735 5.735 2 C 0.082 3.918 3 Si 0.911 3.089 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.527 4.527 8 H 0.072 0.928 9 C 0.376 3.624 10 O -0.526 6.526 11 C -0.148 4.148 12 S -0.068 6.068 13 C -0.088 4.088 14 C -0.110 4.110 15 C -0.104 4.104 16 C -0.143 4.143 17 C -0.101 4.101 18 C -0.142 4.142 19 H 0.276 0.724 20 H 0.087 0.913 21 H 0.087 0.913 22 H 0.124 0.876 23 H 0.121 0.879 24 H 0.118 0.882 25 H 0.120 0.880 26 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.862 -10.380 0.001 12.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.363 5.363 2 C -0.142 4.142 3 Si 0.734 3.266 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.560 4.560 8 H 0.090 0.910 9 C 0.268 3.732 10 O -0.414 6.414 11 C -0.297 4.297 12 S 0.180 5.820 13 C -0.202 4.202 14 C -0.135 4.135 15 C -0.124 4.124 16 C -0.165 4.165 17 C -0.121 4.121 18 C -0.166 4.166 19 H 0.087 0.913 20 H 0.106 0.894 21 H 0.106 0.894 22 H 0.142 0.858 23 H 0.139 0.861 24 H 0.136 0.864 25 H 0.138 0.862 26 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.818 -10.113 0.006 11.202 hybrid contribution 2.184 0.645 -0.007 2.277 sum 7.002 -9.467 -0.001 11.776 Atomic orbital electron populations 1.69940 1.07541 1.28328 1.30524 1.26003 0.94666 1.01006 0.92514 0.86307 0.80367 0.80648 0.79243 1.19327 1.20073 1.18528 1.20607 0.94925 0.91155 1.49265 0.90984 1.18986 0.89037 0.85774 0.79406 1.90455 1.14868 1.87469 1.48562 1.24790 1.02287 0.98287 1.04326 1.86161 1.11667 0.94253 1.89950 1.22472 0.97205 0.99091 1.01405 1.20756 0.99832 0.90641 1.02253 1.21023 0.93643 0.98060 0.99657 1.21037 0.95081 0.97000 1.03383 1.21026 0.99347 0.92487 0.99246 1.21308 0.92434 0.99490 1.03401 0.91311 0.89433 0.89430 0.85766 0.86098 0.86442 0.86248 0.85765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -20.97 11.72 55.57 0.65 -20.32 15 2 C 0.08 2.18 5.50 -17.27 -0.10 2.09 15 3 Si 0.91 19.01 29.56 -169.99 -5.03 13.99 15 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 15 5 H -0.28 -5.62 7.11 56.52 0.40 -5.22 15 6 H -0.26 -5.29 7.11 56.52 0.40 -4.88 15 7 C -0.53 -14.26 9.22 -37.69 -0.35 -14.61 15 8 H 0.07 1.77 7.85 -52.49 -0.41 1.36 15 9 C 0.38 10.38 6.92 -33.25 -0.23 10.15 15 10 O -0.53 -16.47 14.39 5.43 0.08 -16.39 15 11 C -0.15 -3.26 4.69 36.01 0.17 -3.09 15 12 S -0.07 -1.45 21.06 -107.50 -2.26 -3.72 15 13 C -0.09 -1.55 6.11 -39.04 -0.24 -1.79 15 14 C -0.11 -1.69 9.79 -39.36 -0.39 -2.08 15 15 C -0.10 -1.33 10.04 -39.61 -0.40 -1.73 15 16 C -0.14 -1.77 10.04 -39.53 -0.40 -2.16 15 17 C -0.10 -1.36 10.04 -39.62 -0.40 -1.75 15 18 C -0.14 -2.27 9.36 -39.37 -0.37 -2.64 15 19 H 0.28 7.04 8.29 -40.82 -0.34 6.70 15 20 H 0.09 1.78 7.75 -51.92 -0.40 1.37 15 21 H 0.09 1.77 7.75 -51.92 -0.40 1.37 15 22 H 0.12 1.77 8.06 -52.49 -0.42 1.35 15 23 H 0.12 1.20 8.06 -52.49 -0.42 0.77 15 24 H 0.12 1.11 8.06 -52.49 -0.42 0.69 15 25 H 0.12 1.29 8.06 -52.49 -0.42 0.86 15 26 H 0.12 1.95 5.88 -52.49 -0.31 1.64 15 LS Contribution 249.53 15.07 3.76 3.76 Total: -1.00 -31.52 249.53 -7.84 -39.36 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -2.35 Total: 0.94 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: -2.69 Total: -17.62 kcal Atomic # 7 Polarization: -20.97 SS G_CDS: 0.65 Total: -20.32 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: 0.08 Total: -16.39 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.99 kcal Atomic # 16 Polarization: -1.45 SS G_CDS: -2.26 Total: -3.72 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -31.52 -7.84 -39.36 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165974296.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.118 kcal (2) G-P(sol) polarization free energy of solvation -31.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds