Wall clock time and date at job start Mon Mar 30 2020 02:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30521 * 1 3 3 Si 1.86810 * 119.99985 * 2 1 4 4 H 1.48496 * 109.46947 * 270.00382 * 3 2 1 5 5 H 1.48501 * 109.46942 * 29.99974 * 3 2 1 6 6 H 1.48494 * 109.46975 * 150.00406 * 3 2 1 7 7 C 1.40460 * 120.00458 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00498 * 179.97438 * 7 2 1 9 9 C 1.41025 * 119.99538 * 359.97438 * 7 2 1 10 10 O 1.21429 * 120.00189 * 359.97438 * 9 7 2 11 11 C 1.50704 * 119.99924 * 180.02562 * 9 7 2 12 12 S 1.81394 * 109.47167 * 179.97438 * 11 9 7 13 13 C 1.76199 * 103.00056 * 180.02562 * 12 11 9 14 14 C 1.38975 * 120.07816 * 180.02562 * 13 12 11 15 15 C 1.38086 * 119.91892 * 179.97438 * 14 13 12 16 16 C 1.38310 * 120.07752 * 359.97438 * 15 14 13 17 17 C 1.38301 * 120.16067 * 0.02562 * 16 15 14 18 18 C 1.38081 * 120.08205 * 359.97438 * 17 16 15 19 19 H 0.96992 * 119.99914 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.46878 * 59.99851 * 11 9 7 21 21 H 1.09004 * 109.47053 * 299.99798 * 11 9 7 22 22 H 1.07995 * 120.04427 * 359.69664 * 14 13 12 23 23 H 1.08000 * 119.96089 * 179.97438 * 15 14 13 24 24 H 1.07995 * 119.91521 * 179.97438 * 16 15 14 25 25 H 1.07996 * 119.95950 * 179.97438 * 17 16 15 26 26 H 1.07997 * 120.04201 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2393 1.6178 0.0000 4 1 2.4866 2.0465 -1.4000 5 1 1.4367 2.6527 0.7000 6 1 3.5368 1.4402 0.6999 7 6 2.0076 -1.2164 -0.0005 8 1 3.0876 -1.2164 -0.0010 9 6 1.3025 -2.4377 -0.0005 10 8 0.0882 -2.4377 0.0004 11 6 2.0560 -3.7428 -0.0005 12 16 0.8773 -5.1216 0.0002 13 6 1.9247 -6.5385 0.0009 14 6 1.3716 -7.8134 0.0010 15 6 2.1955 -8.9216 0.0010 16 6 3.5696 -8.7637 0.0004 17 6 4.1234 -7.4964 0.0002 18 6 3.3058 -6.3838 0.0002 19 1 -0.4849 0.8400 0.0004 20 1 2.6827 -3.8005 0.8894 21 1 2.6827 -3.8005 -0.8906 22 1 0.2988 -7.9375 0.0057 23 1 1.7665 -9.9127 0.0016 24 1 4.2115 -9.6322 0.0008 25 1 5.1968 -7.3770 0.0001 26 1 3.7389 -5.3945 0.0005 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000165974296.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:56 Heat of formation + Delta-G solvation = -42.088445 kcal Electronic energy + Delta-G solvation = -11957.222947 eV Core-core repulsion = 9704.964198 eV Total energy + Delta-G solvation = -2252.258749 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.046 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.76820 -38.95031 -34.84580 -32.31794 -31.82018 -30.98681 -28.19824 -23.70057 -23.47896 -21.84026 -18.94669 -18.33687 -17.15761 -17.08086 -15.99466 -15.65402 -15.63496 -15.40628 -14.78845 -14.23075 -14.15512 -13.96326 -13.21829 -13.18249 -12.59633 -12.50552 -12.33471 -12.08901 -11.90442 -11.02323 -11.00335 -10.65721 -9.91626 -9.71884 -8.40402 -8.38337 -7.19203 0.30928 0.44212 0.61652 1.33894 1.37910 1.55134 1.64946 2.09490 2.19357 2.80661 3.24613 3.95750 4.06346 4.10417 4.26530 4.37528 4.51145 4.55977 4.63639 4.82251 5.10063 5.13664 5.40069 5.48152 5.57490 5.88402 6.04166 6.62081 6.63691 8.12707 8.41797 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.064451 B = 0.006002 C = 0.005507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.334210 B = 4663.879590 C = 5083.070436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.025 3.975 3 Si 1.000 3.000 4 H -0.258 1.258 5 H -0.269 1.269 6 H -0.246 1.246 7 C -0.552 4.552 8 H 0.093 0.907 9 C 0.349 3.651 10 O -0.576 6.576 11 C -0.127 4.127 12 S -0.134 6.134 13 C -0.107 4.107 14 C -0.123 4.123 15 C -0.100 4.100 16 C -0.129 4.129 17 C -0.102 4.102 18 C -0.156 4.156 19 H 0.284 0.716 20 H 0.101 0.899 21 H 0.102 0.898 22 H 0.125 0.875 23 H 0.157 0.843 24 H 0.158 0.842 25 H 0.150 0.850 26 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.653 -11.529 0.005 15.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.194 4.194 3 Si 0.818 3.182 4 H -0.182 1.182 5 H -0.193 1.193 6 H -0.169 1.169 7 C -0.584 4.584 8 H 0.111 0.889 9 C 0.245 3.755 10 O -0.468 6.468 11 C -0.276 4.276 12 S 0.111 5.889 13 C -0.220 4.220 14 C -0.147 4.147 15 C -0.119 4.119 16 C -0.150 4.150 17 C -0.122 4.122 18 C -0.181 4.181 19 H 0.094 0.906 20 H 0.120 0.880 21 H 0.120 0.880 22 H 0.143 0.857 23 H 0.174 0.826 24 H 0.176 0.824 25 H 0.168 0.832 26 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 7.650 -11.302 0.010 13.648 hybrid contribution 1.365 0.803 -0.009 1.584 sum 9.015 -10.500 0.001 13.839 Atomic orbital electron populations 1.70082 1.09988 1.30129 1.31307 1.27297 0.95515 1.05605 0.91005 0.84981 0.78971 0.74404 0.79837 1.18205 1.19306 1.16912 1.21188 0.96190 0.91909 1.49153 0.88857 1.19706 0.88857 0.88328 0.78567 1.90414 1.16900 1.88787 1.50724 1.24328 1.01476 0.96177 1.05570 1.86209 1.14208 0.96756 1.91682 1.22301 0.97229 0.97589 1.04845 1.20979 1.00585 0.90647 1.02448 1.21444 0.93894 0.98595 0.97973 1.21575 0.95315 0.97883 1.00231 1.21412 1.00680 0.92017 0.98046 1.21443 0.92013 1.00573 1.04031 0.90551 0.88029 0.88009 0.85704 0.82575 0.82416 0.83216 0.86223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -46.30 11.72 21.91 0.26 -46.04 15 2 C 0.03 1.36 5.50 85.43 0.47 1.83 15 3 Si 1.00 38.66 29.56 68.60 2.03 40.69 15 4 H -0.26 -9.47 7.11 99.48 0.71 -8.77 15 5 H -0.27 -9.97 7.11 99.48 0.71 -9.26 15 6 H -0.25 -8.83 7.11 99.48 0.71 -8.12 15 7 C -0.55 -30.40 9.22 23.50 0.22 -30.18 15 8 H 0.09 4.55 7.85 -2.91 -0.02 4.53 15 9 C 0.35 20.08 6.92 26.37 0.18 20.26 15 10 O -0.58 -38.13 14.39 -3.49 -0.05 -38.18 15 11 C -0.13 -5.77 4.69 71.24 0.33 -5.44 15 12 S -0.13 -5.98 21.06 -56.49 -1.19 -7.17 15 13 C -0.11 -3.76 6.11 22.62 0.14 -3.62 15 14 C -0.12 -3.63 9.79 22.41 0.22 -3.42 15 15 C -0.10 -2.19 10.04 22.25 0.22 -1.97 15 16 C -0.13 -2.58 10.04 22.30 0.22 -2.35 15 17 C -0.10 -2.37 10.04 22.25 0.22 -2.15 15 18 C -0.16 -4.83 9.36 22.41 0.21 -4.62 15 19 H 0.28 14.91 8.29 -92.71 -0.77 14.14 15 20 H 0.10 4.22 7.75 -2.39 -0.02 4.20 15 21 H 0.10 4.22 7.75 -2.39 -0.02 4.20 15 22 H 0.12 3.56 8.06 -2.91 -0.02 3.54 15 23 H 0.16 2.34 8.06 -2.91 -0.02 2.31 15 24 H 0.16 1.95 8.06 -2.91 -0.02 1.92 15 25 H 0.15 2.55 8.06 -2.91 -0.02 2.53 15 26 H 0.12 3.69 5.88 -2.91 -0.02 3.67 15 Total: -1.00 -72.13 249.53 4.67 -67.47 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: 1.18 Total: 14.89 kcal Atomic # 6 Polarization: -34.10 SS G_CDS: 2.44 Total: -31.65 kcal Atomic # 7 Polarization: -46.30 SS G_CDS: 0.26 Total: -46.04 kcal Atomic # 8 Polarization: -38.13 SS G_CDS: -0.05 Total: -38.18 kcal Atomic # 14 Polarization: 38.66 SS G_CDS: 2.03 Total: 40.69 kcal Atomic # 16 Polarization: -5.98 SS G_CDS: -1.19 Total: -7.17 kcal Total: -72.13 4.67 -67.47 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165974296.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.378 kcal (2) G-P(sol) polarization free energy of solvation -72.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds