Wall clock time and date at job start Mon Mar 30 2020 02:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31373 * 1 3 3 Si 1.86797 * 119.99897 * 2 1 4 4 H 1.48495 * 109.47581 * 275.25368 * 3 2 1 5 5 H 1.48498 * 109.47210 * 35.25568 * 3 2 1 6 6 H 1.48506 * 109.47051 * 155.25162 * 3 2 1 7 7 C 1.38930 * 119.99962 * 180.27178 * 2 1 3 8 8 H 1.07997 * 119.99938 * 173.71073 * 7 2 1 9 9 N 1.36990 * 119.99574 * 353.70875 * 7 2 1 10 10 N 1.39868 * 125.50132 * 5.93663 * 9 7 2 11 11 C 1.30466 * 110.09441 * 179.97438 * 10 9 7 12 12 C 1.46088 * 107.86430 * 359.97438 * 11 10 9 13 13 C 1.39847 * 133.88128 * 179.97438 * 12 11 10 14 14 C 1.37718 * 119.64366 * 179.29543 * 13 12 11 15 15 Cl 1.73598 * 119.77845 * 180.18802 * 14 13 12 16 16 C 1.38967 * 120.43591 * 0.59211 * 14 13 12 17 17 C 1.37785 * 120.63467 * 359.64059 * 16 14 13 18 18 C 1.37716 * 125.49083 * 185.62099 * 9 7 2 19 19 H 0.97004 * 120.00044 * 359.73293 * 1 2 3 20 20 H 1.08006 * 126.06430 * 179.97438 * 11 10 9 21 21 H 1.07995 * 120.18028 * 0.02562 * 13 12 11 22 22 H 1.08000 * 119.68047 * 179.62466 * 16 14 13 23 23 H 1.08007 * 120.04440 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 2.3842 2.1106 -1.3941 5 1 1.5051 2.6180 0.8081 6 1 3.5964 1.4107 0.5861 7 6 2.0084 -1.2032 -0.0057 8 1 3.0835 -1.2055 -0.1082 9 7 1.3295 -2.3865 0.1187 10 7 -0.0620 -2.5263 0.1401 11 6 -0.3842 -3.7839 0.2697 12 6 0.8524 -4.5583 0.3415 13 6 1.1364 -5.9207 0.4788 14 6 2.4465 -6.3447 0.4996 15 17 2.8030 -8.0356 0.6650 16 6 3.4851 -5.4270 0.3975 17 6 3.2223 -4.0808 0.2665 18 6 1.9072 -3.6311 0.2367 19 1 -0.4850 0.8401 0.0039 20 1 -1.3873 -4.1817 0.3158 21 1 0.3326 -6.6377 0.5562 22 1 4.5081 -5.7724 0.4213 23 1 4.0368 -3.3759 0.1883 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000196194140.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:50 Heat of formation + Delta-G solvation = 62.210073 kcal Electronic energy + Delta-G solvation = -12276.347029 eV Core-core repulsion = 9923.026954 eV Total energy + Delta-G solvation = -2353.320075 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.025 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.71007 -38.24566 -36.75733 -35.35863 -33.10785 -30.75224 -30.07908 -26.93048 -23.82420 -22.61580 -22.41579 -19.34136 -17.96581 -17.39532 -16.41035 -16.19554 -15.65890 -15.17852 -14.91693 -14.15811 -13.77186 -13.70163 -13.15000 -12.90832 -12.83935 -12.22440 -12.03691 -11.80982 -11.63773 -11.46281 -10.99539 -10.61964 -9.35644 -8.91022 -8.52387 -6.15781 0.23505 0.64739 1.35945 1.39866 1.43118 1.54518 2.02702 2.05826 2.56470 2.80927 3.13277 3.94401 4.06667 4.22476 4.39554 4.60938 4.82202 4.97610 5.16400 5.20196 5.44207 5.50334 5.73588 5.98595 6.09281 6.63115 7.31509 7.48116 8.48266 Molecular weight = 222.03amu Principal moments of inertia in cm(-1) A = 0.059634 B = 0.007421 C = 0.006619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.419577 B = 3772.350975 C = 4229.295330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C -0.006 4.006 3 Si 1.014 2.986 4 H -0.264 1.264 5 H -0.273 1.273 6 H -0.250 1.250 7 C -0.352 4.352 8 H 0.129 0.871 9 N -0.208 5.208 10 N -0.253 5.253 11 C -0.030 4.030 12 C -0.208 4.208 13 C -0.030 4.030 14 C -0.098 4.098 15 Cl -0.075 7.075 16 C -0.088 4.088 17 C -0.118 4.118 18 C 0.024 3.976 19 H 0.277 0.723 20 H 0.205 0.795 21 H 0.146 0.854 22 H 0.155 0.845 23 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.165 -7.186 0.839 8.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.216 4.216 3 Si 0.833 3.167 4 H -0.189 1.189 5 H -0.198 1.198 6 H -0.173 1.173 7 C -0.482 4.482 8 H 0.147 0.853 9 N 0.022 4.978 10 N -0.073 5.073 11 C -0.216 4.216 12 C -0.219 4.219 13 C -0.051 4.051 14 C -0.127 4.127 15 Cl -0.047 7.047 16 C -0.110 4.110 17 C -0.140 4.140 18 C -0.097 4.097 19 H 0.087 0.913 20 H 0.221 0.779 21 H 0.164 0.836 22 H 0.172 0.828 23 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.534 -5.865 0.718 7.448 hybrid contribution 0.236 -0.069 0.034 0.248 sum 4.770 -5.934 0.752 7.651 Atomic orbital electron populations 1.70346 1.07971 1.29119 1.38316 1.26715 0.96604 1.03809 0.94503 0.84646 0.78433 0.74558 0.79082 1.18923 1.19780 1.17277 1.20372 0.93252 0.81360 1.53169 0.85308 1.44829 1.02093 1.04280 1.46624 1.77466 0.92176 1.18382 1.19316 1.25447 0.98765 0.90079 1.07263 1.19755 0.92491 0.93991 1.15639 1.20392 0.95493 0.92732 0.96507 1.20329 0.94027 0.84738 1.13575 1.98294 1.95173 1.14437 1.96764 1.20759 0.99211 0.90440 1.00590 1.20022 0.92564 0.95910 1.05520 1.19402 0.96000 0.86238 1.08067 0.91278 0.77853 0.83636 0.82789 0.85122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.15 11.79 21.66 0.26 -45.89 14 2 C -0.01 -0.30 5.49 84.93 0.47 0.16 14 3 Si 1.01 38.59 29.56 68.60 2.03 40.61 14 4 H -0.26 -9.69 7.11 99.48 0.71 -8.98 14 5 H -0.27 -10.17 7.11 99.48 0.71 -9.47 14 6 H -0.25 -8.82 7.11 99.48 0.71 -8.12 14 7 C -0.35 -18.79 10.13 84.05 0.85 -17.94 14 8 H 0.13 6.22 7.80 -2.91 -0.02 6.20 14 9 N -0.21 -11.41 3.74 -183.96 -0.69 -12.10 14 10 N -0.25 -14.04 10.20 -52.86 -0.54 -14.58 14 11 C -0.03 -1.38 12.29 86.93 1.07 -0.31 14 12 C -0.21 -9.23 6.36 -20.22 -0.13 -9.35 14 13 C -0.03 -1.09 9.88 22.54 0.22 -0.86 14 14 C -0.10 -3.25 6.31 22.32 0.14 -3.11 14 15 Cl -0.08 -2.05 28.94 -2.72 -0.08 -2.12 14 16 C -0.09 -2.95 9.80 22.34 0.22 -2.73 14 17 C -0.12 -4.70 9.97 22.35 0.22 -4.48 14 18 C 0.02 1.17 6.81 39.04 0.27 1.44 14 19 H 0.28 14.16 8.31 -92.71 -0.77 13.39 14 20 H 0.20 7.53 8.06 -2.91 -0.02 7.51 14 21 H 0.15 4.35 8.06 -2.91 -0.02 4.33 14 22 H 0.15 4.04 8.06 -2.91 -0.02 4.02 14 23 H 0.13 4.73 8.02 -2.91 -0.02 4.71 14 Total: -1.00 -63.20 230.87 5.54 -57.66 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: 1.23 Total: 13.60 kcal Atomic # 6 Polarization: -40.51 SS G_CDS: 3.33 Total: -37.18 kcal Atomic # 7 Polarization: -71.60 SS G_CDS: -0.97 Total: -72.57 kcal Atomic # 14 Polarization: 38.59 SS G_CDS: 2.03 Total: 40.61 kcal Atomic # 17 Polarization: -2.05 SS G_CDS: -0.08 Total: -2.12 kcal Total: -63.20 5.54 -57.66 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000196194140.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.870 kcal (2) G-P(sol) polarization free energy of solvation -63.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds