Wall clock time and date at job start Mon Mar 30 2020 02:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31006 * 1 3 3 Si 1.86802 * 119.99890 * 2 1 4 4 H 1.48497 * 109.47138 * 270.66324 * 3 2 1 5 5 H 1.48502 * 109.46995 * 30.66342 * 3 2 1 6 6 H 1.48497 * 109.47041 * 150.66075 * 3 2 1 7 7 C 1.39775 * 120.00454 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99537 * 344.89743 * 7 2 1 9 9 C 1.40957 * 120.00372 * 164.62001 * 7 2 1 10 10 C 1.38653 * 127.30563 * 341.43621 * 9 7 2 11 11 O 1.33944 * 109.32107 * 179.88779 * 10 9 7 12 12 C 1.34995 * 111.57034 * 0.40218 * 11 10 9 13 13 C 1.38988 * 132.68936 * 179.75853 * 12 11 10 14 14 C 1.37898 * 120.03888 * 180.02562 * 13 12 11 15 15 C 1.38720 * 120.63323 * 359.97438 * 14 13 12 16 16 Cl 1.73603 * 119.93769 * 179.97438 * 15 14 13 17 17 C 1.38047 * 120.12297 * 359.97438 * 15 14 13 18 18 C 1.39038 * 119.63882 * 0.02562 * 17 15 14 19 19 H 0.96992 * 120.00365 * 359.97438 * 1 2 3 20 20 H 1.07995 * 125.34199 * 0.02562 * 10 9 7 21 21 H 1.08004 * 119.97935 * 359.97438 * 13 12 11 22 22 H 1.07993 * 119.68655 * 179.97438 * 14 13 12 23 23 H 1.08001 * 120.17550 * 180.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2440 1.6178 0.0000 4 1 2.4775 2.0546 -1.3999 5 1 1.4485 2.6486 0.7140 6 1 3.5485 1.4362 0.6860 7 6 2.0090 -1.2104 -0.0005 8 1 1.4970 -2.1297 0.2428 9 6 3.3807 -1.2321 -0.3243 10 6 4.1016 -0.2553 -0.9941 11 8 5.3783 -0.6450 -1.1057 12 6 5.5773 -1.8585 -0.5489 13 6 6.7028 -2.6641 -0.4221 14 6 6.6094 -3.8861 0.2098 15 6 5.3983 -4.3249 0.7248 16 17 5.3012 -5.8669 1.5164 17 6 4.2703 -3.5376 0.6090 18 6 4.3551 -2.3039 -0.0267 19 1 -0.4850 0.8399 0.0004 20 1 3.6977 0.6749 -1.3653 21 1 7.6509 -2.3330 -0.8196 22 1 7.4874 -4.5077 0.3048 23 1 3.3271 -3.8781 1.0100 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000196225366.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:32 Heat of formation + Delta-G solvation = -7.797692 kcal Electronic energy + Delta-G solvation = -12311.455652 eV Core-core repulsion = 9922.807061 eV Total energy + Delta-G solvation = -2388.648591 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.019 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.79046 -38.88327 -37.10353 -35.99887 -33.57918 -31.15533 -30.42678 -27.22775 -24.27958 -23.16810 -21.91970 -19.40407 -18.49160 -17.46615 -16.98111 -16.71708 -16.33227 -15.31347 -15.09385 -14.84635 -14.07725 -13.66885 -13.53275 -13.24105 -12.95767 -12.56780 -12.22063 -12.10904 -11.77655 -11.56508 -11.34347 -10.71107 -9.33180 -9.16226 -8.93088 -6.49177 0.02577 0.29507 1.12415 1.17465 1.27709 1.42760 1.63586 2.07222 2.27855 2.61441 3.10559 3.69869 3.86428 4.18400 4.39402 4.47295 4.56675 4.85110 5.04802 5.17439 5.28069 5.46986 5.50380 5.65954 6.09673 6.38574 6.52146 6.77827 8.15752 Molecular weight = 222.02amu Principal moments of inertia in cm(-1) A = 0.039633 B = 0.009084 C = 0.007592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.319001 B = 3081.627210 C = 3687.217351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.045 3.955 3 Si 0.957 3.043 4 H -0.248 1.248 5 H -0.271 1.271 6 H -0.250 1.250 7 C -0.452 4.452 8 H 0.059 0.941 9 C 0.001 3.999 10 C -0.244 4.244 11 O -0.199 6.199 12 C 0.048 3.952 13 C -0.108 4.108 14 C -0.075 4.075 15 C -0.074 4.074 16 Cl -0.064 7.064 17 C -0.062 4.062 18 C -0.166 4.166 19 H 0.296 0.704 20 H 0.188 0.812 21 H 0.169 0.831 22 H 0.178 0.822 23 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.208 -4.198 0.839 11.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.169 4.169 3 Si 0.780 3.220 4 H -0.174 1.174 5 H -0.197 1.197 6 H -0.174 1.174 7 C -0.482 4.482 8 H 0.077 0.923 9 C -0.002 4.002 10 C -0.307 4.307 11 O -0.102 6.102 12 C -0.001 4.001 13 C -0.126 4.126 14 C -0.093 4.093 15 C -0.101 4.101 16 Cl -0.036 7.036 17 C -0.081 4.081 18 C -0.168 4.168 19 H 0.107 0.893 20 H 0.204 0.796 21 H 0.186 0.814 22 H 0.196 0.804 23 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 11.102 -4.101 0.804 11.863 hybrid contribution -0.813 0.495 0.164 0.966 sum 10.289 -3.606 0.968 10.946 Atomic orbital electron populations 1.69732 1.08826 1.31596 1.37470 1.26699 0.95535 1.03966 0.90672 0.85644 0.79502 0.76508 0.80350 1.17391 1.19723 1.17415 1.18610 0.91612 0.95605 1.42361 0.92263 1.19052 0.93239 0.91872 0.96008 1.23733 0.81688 1.05171 1.20147 1.83549 1.29462 1.30275 1.66941 1.20239 0.96100 0.86248 0.97553 1.20181 0.96127 0.92929 1.03397 1.21016 0.96818 0.95161 0.96336 1.20593 0.95303 0.89456 1.04734 1.98324 1.98647 1.27494 1.79092 1.20341 0.98291 0.91860 0.97609 1.20138 0.94720 0.97141 1.04754 0.89339 0.79590 0.81354 0.80426 0.86074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.24 13.94 21.81 0.30 -45.94 14 2 C 0.05 2.43 5.51 85.19 0.47 2.90 14 3 Si 0.96 41.44 24.54 68.60 1.68 43.13 14 4 H -0.25 -9.96 6.70 99.48 0.67 -9.29 14 5 H -0.27 -10.93 7.11 99.48 0.71 -10.22 14 6 H -0.25 -11.15 6.56 99.48 0.65 -10.50 14 7 C -0.45 -25.59 9.95 23.31 0.23 -25.36 14 8 H 0.06 3.59 8.06 -2.91 -0.02 3.56 14 9 C 0.00 0.07 5.70 -19.96 -0.11 -0.05 14 10 C -0.24 -11.93 9.46 67.92 0.64 -11.29 14 11 O -0.20 -9.10 10.52 -6.00 -0.06 -9.16 14 12 C 0.05 2.00 7.36 22.92 0.17 2.17 14 13 C -0.11 -3.32 10.06 22.37 0.23 -3.09 14 14 C -0.08 -2.06 9.80 22.30 0.22 -1.84 14 15 C -0.07 -2.41 6.32 22.34 0.14 -2.27 14 16 Cl -0.06 -1.77 28.95 -2.72 -0.08 -1.85 14 17 C -0.06 -2.52 9.87 22.42 0.22 -2.30 14 18 C -0.17 -7.74 6.36 -20.06 -0.13 -7.87 14 19 H 0.30 14.41 8.30 -92.71 -0.77 13.64 14 20 H 0.19 8.56 4.16 -2.91 -0.01 8.55 14 21 H 0.17 3.83 8.06 -2.91 -0.02 3.81 14 22 H 0.18 3.31 8.06 -2.91 -0.02 3.29 14 23 H 0.12 4.99 8.06 -2.91 -0.02 4.97 14 Total: -1.00 -60.09 223.39 5.07 -55.02 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: 1.15 Total: 7.80 kcal Atomic # 6 Polarization: -51.08 SS G_CDS: 2.08 Total: -49.01 kcal Atomic # 7 Polarization: -46.24 SS G_CDS: 0.30 Total: -45.94 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: -0.06 Total: -9.16 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 1.68 Total: 43.13 kcal Atomic # 17 Polarization: -1.77 SS G_CDS: -0.08 Total: -1.85 kcal Total: -60.09 5.07 -55.02 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000196225366.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.223 kcal (2) G-P(sol) polarization free energy of solvation -60.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds