Wall clock time and date at job start Mon Mar 30 2020 02:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30776 * 1 3 3 Si 1.86796 * 120.00350 * 2 1 4 4 H 1.48498 * 109.47617 * 240.00254 * 3 2 1 5 5 H 1.48507 * 109.47035 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47354 * 119.99891 * 3 2 1 7 7 C 1.40157 * 119.99817 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99888 * 180.02562 * 7 2 1 9 9 C 1.39892 * 119.99790 * 359.97438 * 7 2 1 10 10 C 1.36967 * 124.82701 * 180.02562 * 9 7 2 11 11 C 1.39762 * 115.03535 * 180.02562 * 10 9 7 12 12 C 1.41981 * 128.50019 * 180.23514 * 11 10 9 13 13 C 1.35851 * 120.50853 * 180.22780 * 12 11 10 14 14 C 1.39230 * 120.62312 * 359.51396 * 13 12 11 15 15 F 1.35102 * 119.91160 * 180.27850 * 14 13 12 16 16 C 1.37924 * 120.17612 * 0.25730 * 14 13 12 17 17 C 1.39566 * 120.26864 * 359.97438 * 16 14 13 18 18 S 1.75454 * 124.83174 * 0.02989 * 9 7 2 19 19 H 0.97010 * 120.00068 * 359.97438 * 1 2 3 20 20 H 1.08000 * 122.47995 * 0.02562 * 10 9 7 21 21 H 1.07994 * 119.74634 * 359.97438 * 12 11 10 22 22 H 1.08002 * 119.68947 * 179.79768 * 13 12 11 23 23 H 1.08007 * 119.87044 * 179.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2418 1.6176 0.0000 4 1 3.0956 1.6964 -1.2125 5 1 1.2768 2.7465 0.0006 6 1 3.0956 1.6963 1.2125 7 6 2.0085 -1.2138 -0.0005 8 1 3.0885 -1.2138 -0.0001 9 6 1.3090 -2.4253 -0.0005 10 6 1.8915 -3.6649 -0.0005 11 6 0.9969 -4.7387 -0.0011 12 6 1.2849 -6.1290 0.0033 13 6 0.2788 -7.0418 -0.0027 14 6 -1.0515 -6.6309 -0.0031 15 9 -2.0408 -7.5510 -0.0034 16 6 -1.3621 -5.2871 -0.0028 17 6 -0.3461 -4.3303 -0.0015 18 16 -0.4394 -2.5729 -0.0006 19 1 -0.4851 0.8401 0.0004 20 1 2.9627 -3.8023 -0.0001 21 1 2.3118 -6.4635 0.0074 22 1 0.5130 -8.0961 -0.0026 23 1 -2.3958 -4.9739 -0.0035 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000201377197.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:23 Heat of formation + Delta-G solvation = -36.526711 kcal Electronic energy + Delta-G solvation = -12004.591648 eV Core-core repulsion = 9629.113769 eV Total energy + Delta-G solvation = -2375.477879 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.021 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -47.93172 -38.03963 -34.99909 -32.97358 -30.04682 -28.84478 -25.28393 -22.54042 -21.56000 -19.38220 -18.08214 -16.85017 -15.71741 -15.18060 -14.68094 -14.67425 -14.26660 -13.26831 -12.84659 -12.40696 -12.33730 -12.31631 -11.60598 -11.46924 -11.26690 -10.80482 -10.47582 -10.33073 -9.89995 -9.34354 -9.14993 -8.63054 -7.39602 -7.27541 -6.51851 -4.76559 1.87997 2.23666 2.75534 2.79608 2.84089 3.14116 3.43061 3.50746 3.74663 4.48679 4.95950 5.31985 5.67861 5.72254 6.24636 6.42031 6.57492 6.63272 6.92363 7.05245 7.17300 7.26076 7.40132 7.65072 7.79798 7.97114 8.20911 8.30865 9.55817 Molecular weight = 222.02amu Principal moments of inertia in cm(-1) A = 0.071070 B = 0.007637 C = 0.006912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.882890 B = 3665.696600 C = 4049.737334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.052 3.948 3 Si 0.941 3.059 4 H -0.258 1.258 5 H -0.272 1.272 6 H -0.258 1.258 7 C -0.379 4.379 8 H 0.100 0.900 9 C 0.054 3.946 10 C -0.362 4.362 11 C 0.012 3.988 12 C -0.129 4.129 13 C -0.134 4.134 14 C 0.002 3.998 15 F -0.162 7.162 16 C -0.079 4.079 17 C -0.253 4.253 18 S 0.150 5.850 19 H 0.304 0.696 20 H 0.109 0.891 21 H 0.111 0.889 22 H 0.113 0.887 23 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.479 -0.204 0.002 0.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.170 4.170 3 Si 0.764 3.236 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.183 1.183 7 C -0.413 4.413 8 H 0.118 0.882 9 C -0.065 4.065 10 C -0.387 4.387 11 C 0.004 3.996 12 C -0.149 4.149 13 C -0.155 4.155 14 C -0.019 4.019 15 F -0.142 7.142 16 C -0.103 4.103 17 C -0.367 4.367 18 S 0.410 5.590 19 H 0.117 0.883 20 H 0.127 0.873 21 H 0.129 0.871 22 H 0.131 0.869 23 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.907 0.965 0.003 1.324 hybrid contribution 1.337 -0.580 -0.001 1.457 sum 0.430 0.385 0.002 0.577 Atomic orbital electron populations 1.68598 1.07835 1.31380 1.32220 1.26358 0.95154 1.03156 0.92330 0.85761 0.79683 0.77650 0.80538 1.18259 1.19634 1.18266 1.19332 0.95803 0.88557 1.37610 0.88163 1.21458 0.94847 0.95921 0.94313 1.19590 0.97864 0.89934 1.31274 1.18081 0.92057 0.93180 0.96317 1.20394 0.97706 0.91471 1.05312 1.20212 0.91277 0.99181 1.04834 1.17117 0.84619 0.85632 1.14579 1.91348 1.61373 1.66087 1.95349 1.20061 0.97994 0.90293 1.01918 1.23496 0.95822 1.02542 1.14885 1.84861 1.05147 0.90800 1.78176 0.88305 0.87319 0.87051 0.86853 0.86864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.57 10.58 55.56 0.59 -16.98 14 2 C 0.05 1.14 5.50 -17.28 -0.10 1.05 14 3 Si 0.94 16.32 29.56 -169.99 -5.03 11.30 14 4 H -0.26 -4.44 7.11 56.52 0.40 -4.04 14 5 H -0.27 -4.56 7.11 56.52 0.40 -4.16 14 6 H -0.26 -4.44 7.11 56.52 0.40 -4.04 14 7 C -0.38 -9.09 9.26 -38.24 -0.35 -9.44 14 8 H 0.10 2.24 7.85 -52.48 -0.41 1.83 14 9 C 0.05 1.38 6.11 -39.42 -0.24 1.14 14 10 C -0.36 -8.99 10.14 -39.47 -0.40 -9.39 14 11 C 0.01 0.29 5.86 -107.09 -0.63 -0.34 14 12 C -0.13 -2.73 10.03 -39.00 -0.39 -3.12 14 13 C -0.13 -2.69 9.92 -40.07 -0.40 -3.09 14 14 C 0.00 0.03 7.30 -39.33 -0.29 -0.25 14 15 F -0.16 -3.29 17.26 2.25 0.04 -3.25 14 16 C -0.08 -1.76 10.04 -39.20 -0.39 -2.15 14 17 C -0.25 -6.09 6.47 -38.28 -0.25 -6.34 14 18 S 0.15 3.64 20.12 -107.50 -2.16 1.47 14 19 H 0.30 6.15 8.30 -40.82 -0.34 5.81 14 20 H 0.11 2.55 8.06 -52.49 -0.42 2.13 14 21 H 0.11 2.07 8.06 -52.49 -0.42 1.65 14 22 H 0.11 1.93 8.06 -52.49 -0.42 1.50 14 23 H 0.11 2.28 8.06 -52.48 -0.42 1.86 14 LS Contribution 227.87 15.07 3.43 3.43 Total: -1.00 -25.64 227.87 -7.80 -33.44 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -1.24 Total: 2.53 kcal Atomic # 6 Polarization: -28.51 SS G_CDS: -3.44 Total: -31.94 kcal Atomic # 7 Polarization: -17.57 SS G_CDS: 0.59 Total: -16.98 kcal Atomic # 9 Polarization: -3.29 SS G_CDS: 0.04 Total: -3.25 kcal Atomic # 14 Polarization: 16.32 SS G_CDS: -5.03 Total: 11.30 kcal Atomic # 16 Polarization: 3.64 SS G_CDS: -2.16 Total: 1.47 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -25.64 -7.80 -33.44 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000201377197.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.089 kcal (2) G-P(sol) polarization free energy of solvation -25.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds