Wall clock time and date at job start Mon Mar 30 2020 02:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30776 * 1 3 3 Si 1.86796 * 120.00350 * 2 1 4 4 H 1.48498 * 109.47617 * 240.00254 * 3 2 1 5 5 H 1.48507 * 109.47035 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47354 * 119.99891 * 3 2 1 7 7 C 1.40157 * 119.99817 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99888 * 180.02562 * 7 2 1 9 9 C 1.39892 * 119.99790 * 359.97438 * 7 2 1 10 10 C 1.36967 * 124.82701 * 180.02562 * 9 7 2 11 11 C 1.39762 * 115.03535 * 180.02562 * 10 9 7 12 12 C 1.41981 * 128.50019 * 180.23514 * 11 10 9 13 13 C 1.35851 * 120.50853 * 180.22780 * 12 11 10 14 14 C 1.39230 * 120.62312 * 359.51396 * 13 12 11 15 15 F 1.35102 * 119.91160 * 180.27850 * 14 13 12 16 16 C 1.37924 * 120.17612 * 0.25730 * 14 13 12 17 17 C 1.39566 * 120.26864 * 359.97438 * 16 14 13 18 18 S 1.75454 * 124.83174 * 0.02989 * 9 7 2 19 19 H 0.97010 * 120.00068 * 359.97438 * 1 2 3 20 20 H 1.08000 * 122.47995 * 0.02562 * 10 9 7 21 21 H 1.07994 * 119.74634 * 359.97438 * 12 11 10 22 22 H 1.08002 * 119.68947 * 179.79768 * 13 12 11 23 23 H 1.08007 * 119.87044 * 179.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2418 1.6176 0.0000 4 1 3.0956 1.6964 -1.2125 5 1 1.2768 2.7465 0.0006 6 1 3.0956 1.6963 1.2125 7 6 2.0085 -1.2138 -0.0005 8 1 3.0885 -1.2138 -0.0001 9 6 1.3090 -2.4253 -0.0005 10 6 1.8915 -3.6649 -0.0005 11 6 0.9969 -4.7387 -0.0011 12 6 1.2849 -6.1290 0.0033 13 6 0.2788 -7.0418 -0.0027 14 6 -1.0515 -6.6309 -0.0031 15 9 -2.0408 -7.5510 -0.0034 16 6 -1.3621 -5.2871 -0.0028 17 6 -0.3461 -4.3303 -0.0015 18 16 -0.4394 -2.5729 -0.0006 19 1 -0.4851 0.8401 0.0004 20 1 2.9627 -3.8023 -0.0001 21 1 2.3118 -6.4635 0.0074 22 1 0.5130 -8.0961 -0.0026 23 1 -2.3958 -4.9739 -0.0035 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000201377197.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:23 Heat of formation + Delta-G solvation = -48.323014 kcal Electronic energy + Delta-G solvation = -12005.103174 eV Core-core repulsion = 9629.113769 eV Total energy + Delta-G solvation = -2375.989405 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.021 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.59062 -39.77148 -36.74315 -34.71377 -31.74528 -30.61484 -27.04268 -24.28484 -23.28151 -21.14170 -19.86111 -18.55880 -17.37956 -16.84954 -16.38445 -16.34031 -15.93136 -14.87780 -14.50158 -14.13689 -14.12126 -13.92099 -13.15594 -13.12176 -12.97598 -12.44469 -11.98369 -11.92695 -11.64574 -11.01954 -10.98071 -10.38236 -9.18603 -8.95444 -8.36011 -6.58278 0.13965 0.52550 1.27597 1.31632 1.37596 1.53554 1.79448 1.83860 2.12838 2.75830 3.16465 3.63949 4.01259 4.16862 4.59284 4.67691 4.87602 4.93214 5.21902 5.31785 5.44685 5.47134 5.63096 5.87579 6.02560 6.23323 6.42690 6.50714 7.91332 Molecular weight = 222.02amu Principal moments of inertia in cm(-1) A = 0.071070 B = 0.007637 C = 0.006912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.882890 B = 3665.696600 C = 4049.737334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.016 3.984 3 Si 1.015 2.985 4 H -0.254 1.254 5 H -0.260 1.260 6 H -0.254 1.254 7 C -0.405 4.405 8 H 0.108 0.892 9 C 0.026 3.974 10 C -0.388 4.388 11 C -0.011 4.011 12 C -0.130 4.130 13 C -0.126 4.126 14 C 0.004 3.996 15 F -0.154 7.154 16 C -0.091 4.091 17 C -0.275 4.275 18 S 0.133 5.867 19 H 0.315 0.685 20 H 0.112 0.888 21 H 0.138 0.862 22 H 0.152 0.848 23 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.919 -0.248 0.003 0.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.203 4.203 3 Si 0.833 3.167 4 H -0.178 1.178 5 H -0.184 1.184 6 H -0.178 1.178 7 C -0.438 4.438 8 H 0.126 0.874 9 C -0.094 4.094 10 C -0.412 4.412 11 C -0.019 4.019 12 C -0.150 4.150 13 C -0.147 4.147 14 C -0.017 4.017 15 F -0.134 7.134 16 C -0.115 4.115 17 C -0.389 4.389 18 S 0.392 5.608 19 H 0.128 0.872 20 H 0.130 0.870 21 H 0.156 0.844 22 H 0.170 0.830 23 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.484 0.887 0.003 1.011 hybrid contribution 1.136 -0.662 -0.001 1.315 sum 0.652 0.225 0.002 0.690 Atomic orbital electron populations 1.68625 1.09195 1.32956 1.31440 1.27348 0.95880 1.06123 0.90990 0.84693 0.78385 0.72996 0.80625 1.17775 1.18378 1.17785 1.19724 0.96470 0.89242 1.38354 0.87438 1.21819 0.95399 0.96862 0.95285 1.19751 0.98215 0.90362 1.32871 1.18401 0.92008 0.94569 0.96936 1.20708 0.99538 0.90276 1.04477 1.20588 0.90257 1.00980 1.02838 1.17286 0.85440 0.85425 1.13553 1.91371 1.61175 1.65609 1.95197 1.20259 0.98388 0.90675 1.02147 1.23648 0.96539 1.02515 1.16234 1.84647 1.05211 0.91892 1.79004 0.87165 0.87043 0.84417 0.83032 0.85565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -36.14 10.58 21.87 0.23 -35.91 14 2 C 0.02 0.70 5.50 85.32 0.47 1.17 14 3 Si 1.02 32.29 29.56 68.60 2.03 34.32 14 4 H -0.25 -7.86 7.11 99.48 0.71 -7.15 14 5 H -0.26 -7.71 7.11 99.48 0.71 -7.00 14 6 H -0.25 -7.86 7.11 99.48 0.71 -7.16 14 7 C -0.40 -19.65 9.26 23.14 0.21 -19.43 14 8 H 0.11 4.87 7.85 -2.91 -0.02 4.84 14 9 C 0.03 1.34 6.11 22.37 0.14 1.48 14 10 C -0.39 -19.67 10.14 22.34 0.23 -19.44 14 11 C -0.01 -0.54 5.86 -21.46 -0.13 -0.67 14 12 C -0.13 -5.29 10.03 22.64 0.23 -5.07 14 13 C -0.13 -4.69 9.92 21.95 0.22 -4.48 14 14 C 0.00 0.16 7.30 22.43 0.16 0.33 14 15 F -0.15 -5.85 17.26 44.97 0.78 -5.07 14 16 C -0.09 -3.99 10.04 22.52 0.23 -3.77 14 17 C -0.27 -13.36 6.47 23.11 0.15 -13.21 14 18 S 0.13 6.61 20.12 -56.49 -1.14 5.47 14 19 H 0.31 12.56 8.30 -92.70 -0.77 11.79 14 20 H 0.11 5.36 8.06 -2.91 -0.02 5.33 14 21 H 0.14 4.77 8.06 -2.91 -0.02 4.75 14 22 H 0.15 4.47 8.06 -2.91 -0.02 4.45 14 23 H 0.13 5.02 8.06 -2.91 -0.02 5.00 14 Total: -1.00 -54.47 227.87 5.04 -49.43 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: 1.24 Total: 14.86 kcal Atomic # 6 Polarization: -65.00 SS G_CDS: 1.91 Total: -63.09 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: 0.23 Total: -35.91 kcal Atomic # 9 Polarization: -5.85 SS G_CDS: 0.78 Total: -5.07 kcal Atomic # 14 Polarization: 32.29 SS G_CDS: 2.03 Total: 34.32 kcal Atomic # 16 Polarization: 6.61 SS G_CDS: -1.14 Total: 5.47 kcal Total: -54.47 5.04 -49.43 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000201377197.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.106 kcal (2) G-P(sol) polarization free energy of solvation -54.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds