Wall clock time and date at job start Mon Mar 30 2020 02:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31063 * 1 3 3 Si 1.86799 * 119.99801 * 2 1 4 4 H 1.48500 * 109.47648 * 274.04368 * 3 2 1 5 5 H 1.48502 * 109.47318 * 34.04668 * 3 2 1 6 6 H 1.48497 * 109.46992 * 154.04327 * 3 2 1 7 7 C 1.39681 * 120.00320 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99613 * 340.67682 * 7 2 1 9 9 C 1.41261 * 120.00257 * 160.67191 * 7 2 1 10 10 C 1.37486 * 123.64529 * 338.14982 * 9 7 2 11 11 S 1.70437 * 110.66187 * 180.02562 * 10 9 7 12 12 C 1.75444 * 92.57261 * 359.83932 * 11 10 9 13 13 C 1.50704 * 124.54969 * 180.20433 * 12 11 10 14 14 F 1.39899 * 109.47242 * 270.09808 * 13 12 11 15 15 F 1.39893 * 109.47286 * 30.10767 * 13 12 11 16 16 F 1.39905 * 109.46504 * 150.10264 * 13 12 11 17 17 C 1.32566 * 110.89191 * 0.29867 * 12 11 10 18 18 H 0.96996 * 120.00165 * 359.97438 * 1 2 3 19 19 H 1.08001 * 124.66738 * 0.04225 * 10 9 7 20 20 H 1.07996 * 123.42009 * 179.97438 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3106 0.0000 0.0000 3 14 2.2446 1.6178 0.0000 4 1 2.4066 2.0959 -1.3965 5 1 1.4874 2.6265 0.7839 6 1 3.5822 1.4170 0.6128 7 6 2.0091 -1.2096 -0.0005 8 1 1.5147 -2.1187 0.3086 9 6 3.3620 -1.2439 -0.4054 10 6 3.9435 -0.2853 -1.2011 11 16 5.5835 -0.6529 -1.4846 12 6 5.5042 -2.1159 -0.5196 13 6 6.6648 -3.0477 -0.2832 14 9 6.6900 -4.0245 -1.2844 15 9 7.8596 -2.3207 -0.3105 16 9 6.5218 -3.6631 0.9651 17 6 4.2858 -2.2925 -0.0280 18 1 -0.4850 0.8400 0.0004 19 1 3.4316 0.5815 -1.5924 20 1 4.0116 -3.1307 0.5954 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214617868.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:51 Heat of formation + Delta-G solvation = -148.162935 kcal Electronic energy + Delta-G solvation = -12826.479875 eV Core-core repulsion = 9891.931557 eV Total energy + Delta-G solvation = -2934.548319 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.002 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -51.17602 -48.69600 -48.65650 -38.59899 -35.25970 -32.15349 -27.99423 -26.87223 -23.43948 -21.12538 -19.93373 -19.53163 -19.02747 -18.55218 -17.18744 -16.52817 -15.59324 -15.53955 -15.11623 -15.06517 -14.83191 -14.82633 -14.80477 -14.01181 -13.63835 -13.47098 -12.94797 -12.60093 -12.52074 -11.72363 -11.56869 -11.15597 -9.84939 -9.28654 -8.94276 -6.50100 0.01259 0.67129 1.15399 1.30055 1.46040 1.46836 1.72132 1.74146 2.11550 2.72348 3.04027 3.21060 3.37158 4.30779 4.65116 4.76307 5.02176 5.38174 5.52709 6.16952 6.40182 6.72985 8.13120 Molecular weight = 222.00amu Principal moments of inertia in cm(-1) A = 0.049915 B = 0.009795 C = 0.008933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.814309 B = 2857.814458 C = 3133.538675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.052 3.948 3 Si 0.962 3.038 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.248 1.248 7 C -0.453 4.453 8 H 0.068 0.932 9 C 0.045 3.955 10 C -0.439 4.439 11 S 0.163 5.837 12 C -0.310 4.310 13 C 0.551 3.449 14 F -0.174 7.174 15 F -0.173 7.173 16 F -0.172 7.172 17 C -0.074 4.074 18 H 0.295 0.705 19 H 0.139 0.861 20 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.565 -1.328 -0.622 10.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.164 4.164 3 Si 0.787 3.213 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.171 1.171 7 C -0.486 4.486 8 H 0.086 0.914 9 C 0.035 3.965 10 C -0.575 4.575 11 S 0.427 5.573 12 C -0.427 4.427 13 C 0.495 3.505 14 F -0.155 7.155 15 F -0.154 7.154 16 F -0.153 7.153 17 C -0.111 4.111 18 H 0.105 0.895 19 H 0.157 0.843 20 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 11.465 -0.536 -1.435 11.567 hybrid contribution -1.391 -0.239 0.871 1.658 sum 10.074 -0.775 -0.564 10.120 Atomic orbital electron populations 1.69799 1.08943 1.31562 1.36650 1.26685 0.95289 1.04031 0.90392 0.85483 0.79932 0.76767 0.79123 1.19103 1.20605 1.17102 1.19018 0.93663 0.96142 1.39785 0.91391 1.17975 0.93684 0.91527 0.93330 1.24684 1.00954 1.11582 1.20239 1.81660 1.08216 1.15936 1.51444 1.24409 0.98089 1.05363 1.14800 1.17141 0.80864 0.78445 0.74027 1.93208 1.96610 1.64361 1.61333 1.93186 1.48608 1.77408 1.96202 1.93187 1.95739 1.83918 1.42476 1.21464 0.90952 1.00030 0.98658 0.89466 0.84325 0.83038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.89 13.94 21.79 0.30 -44.59 14 2 C 0.05 2.70 5.46 85.16 0.46 3.16 14 3 Si 0.96 41.81 24.55 68.60 1.68 43.49 14 4 H -0.26 -11.08 6.65 99.48 0.66 -10.42 14 5 H -0.28 -11.42 7.11 99.48 0.71 -10.72 14 6 H -0.25 -10.87 6.74 99.48 0.67 -10.20 14 7 C -0.45 -24.22 9.78 23.36 0.23 -23.99 14 8 H 0.07 3.83 8.06 -2.91 -0.02 3.80 14 9 C 0.04 2.18 5.34 -21.05 -0.11 2.06 14 10 C -0.44 -20.00 8.22 67.64 0.56 -19.44 14 11 S 0.16 6.20 22.67 -56.49 -1.28 4.92 14 12 C -0.31 -11.75 5.88 24.54 0.14 -11.61 14 13 C 0.55 17.97 3.51 71.24 0.25 18.22 14 14 F -0.17 -5.51 17.30 44.97 0.78 -4.73 14 15 F -0.17 -5.34 17.02 44.97 0.77 -4.57 14 16 F -0.17 -5.43 16.89 44.97 0.76 -4.67 14 17 C -0.07 -3.10 9.82 22.78 0.22 -2.87 14 18 H 0.29 14.13 8.30 -92.71 -0.77 13.36 14 19 H 0.14 6.39 4.34 -2.91 -0.01 6.38 14 20 H 0.15 5.76 7.98 -2.91 -0.02 5.74 14 Total: -1.00 -52.64 209.55 5.97 -46.67 By element: Atomic # 1 Polarization: -3.26 SS G_CDS: 1.21 Total: -2.05 kcal Atomic # 6 Polarization: -36.21 SS G_CDS: 1.75 Total: -34.46 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: 0.30 Total: -44.59 kcal Atomic # 9 Polarization: -16.28 SS G_CDS: 2.30 Total: -13.98 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 1.68 Total: 43.49 kcal Atomic # 16 Polarization: 6.20 SS G_CDS: -1.28 Total: 4.92 kcal Total: -52.64 5.97 -46.67 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214617868.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.493 kcal (2) G-P(sol) polarization free energy of solvation -52.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds