Wall clock time and date at job start Mon Mar 30 2020 02:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30860 * 1 3 3 Si 1.86803 * 119.99639 * 2 1 4 4 H 1.48505 * 109.46961 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47081 * 299.99870 * 3 2 1 6 6 H 1.48494 * 109.47541 * 59.99833 * 3 2 1 7 7 C 1.39938 * 120.00095 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00105 * 163.21751 * 7 2 1 9 9 C 1.41013 * 120.00168 * 343.20990 * 7 2 1 10 10 C 1.40599 * 120.16575 * 334.42216 * 9 7 2 11 11 C 1.37502 * 119.41238 * 179.90150 * 10 9 7 12 12 C 1.38269 * 120.73144 * 0.10796 * 11 10 9 13 13 C 1.40157 * 121.21518 * 359.92815 * 12 11 10 14 14 O 1.34540 * 127.86673 * 180.02562 * 13 12 11 15 15 C 1.32208 * 117.14343 * 179.97438 * 14 13 12 16 16 O 1.21619 * 125.10449 * 180.02562 * 15 14 13 17 17 S 1.75791 * 109.79448 * 0.02562 * 15 14 13 18 18 C 1.38460 * 118.69649 * 359.97438 * 13 12 11 19 19 H 0.97001 * 120.00210 * 359.97438 * 1 2 3 20 20 H 1.07998 * 120.29157 * 0.02562 * 10 9 7 21 21 H 1.07997 * 119.63934 * 180.02562 * 11 10 9 22 22 H 1.07997 * 119.39358 * 180.20165 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 3.7026 1.3465 -0.0006 5 1 1.8837 2.3965 -1.2125 6 1 1.8838 2.3966 1.2124 7 6 2.0083 -1.2119 0.0005 8 1 3.0538 -1.2319 -0.2695 9 6 1.3484 -2.4069 0.3538 10 6 0.2197 -2.3697 1.1914 11 6 -0.4131 -3.5442 1.5244 12 6 0.0500 -4.7563 1.0468 13 6 1.1728 -4.8266 0.2109 14 8 1.7344 -5.9244 -0.3271 15 6 2.7979 -5.7448 -1.0918 16 8 3.4167 -6.6314 -1.6487 17 16 3.1834 -4.0321 -1.1827 18 6 1.8191 -3.6518 -0.1346 19 1 -0.4850 0.8400 0.0004 20 1 -0.1482 -1.4268 1.5682 21 1 -1.2806 -3.5198 2.1671 22 1 -0.4655 -5.6653 1.3194 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214631806.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:38 Heat of formation + Delta-G solvation = -45.236380 kcal Electronic energy + Delta-G solvation = -12377.030553 eV Core-core repulsion = 9988.802205 eV Total energy + Delta-G solvation = -2388.228348 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.014 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.06278 -37.93520 -36.66103 -33.92246 -30.37454 -29.19669 -26.19690 -24.43749 -22.15302 -20.91328 -19.18204 -16.96004 -16.67522 -16.47463 -15.74900 -15.47844 -14.66146 -13.54301 -13.19247 -13.05506 -12.75548 -12.21018 -11.86755 -11.42289 -11.28720 -10.86133 -10.72346 -10.47568 -9.83702 -9.64086 -9.52913 -9.23276 -7.68506 -7.33454 -7.13851 -4.82975 1.59782 1.89803 2.24813 2.60484 2.63844 2.88632 2.93847 2.96333 3.14287 3.65228 4.18077 5.10446 5.75280 6.00465 6.34346 6.45339 6.63197 6.75532 6.96834 7.33820 7.37406 7.53162 7.57451 7.81583 8.12404 8.35853 8.39562 9.72785 Molecular weight = 222.01amu Principal moments of inertia in cm(-1) A = 0.036593 B = 0.010529 C = 0.008365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.984292 B = 2658.637147 C = 3346.500036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.077 3.923 3 Si 0.917 3.083 4 H -0.256 1.256 5 H -0.269 1.269 6 H -0.267 1.267 7 C -0.439 4.439 8 H 0.088 0.912 9 C 0.168 3.832 10 C -0.162 4.162 11 C -0.066 4.066 12 C -0.223 4.223 13 C 0.113 3.887 14 O -0.265 6.265 15 C 0.460 3.540 16 O -0.450 6.450 17 S -0.008 6.008 18 C -0.290 4.290 19 H 0.289 0.711 20 H 0.133 0.867 21 H 0.112 0.888 22 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.081 0.995 1.830 2.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.145 4.145 3 Si 0.740 3.260 4 H -0.179 1.179 5 H -0.194 1.194 6 H -0.192 1.192 7 C -0.467 4.467 8 H 0.106 0.894 9 C 0.162 3.838 10 C -0.184 4.184 11 C -0.085 4.085 12 C -0.245 4.245 13 C 0.065 3.935 14 O -0.177 6.177 15 C 0.197 3.803 16 O -0.342 6.342 17 S 0.229 5.771 18 C -0.404 4.404 19 H 0.101 0.899 20 H 0.151 0.849 21 H 0.130 0.870 22 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.076 1.205 0.923 1.861 hybrid contribution -0.642 0.092 0.489 0.813 sum 0.433 1.298 1.413 1.966 Atomic orbital electron populations 1.69804 1.07793 1.30362 1.31344 1.26037 0.94895 1.01973 0.91629 0.86089 0.81139 0.79736 0.79058 1.17884 1.19448 1.19155 1.19709 0.98142 0.90748 1.38062 0.89399 1.16839 0.90568 0.88715 0.87673 1.21293 0.98613 0.97549 1.00951 1.20456 0.98228 0.91647 0.98189 1.19494 0.98764 0.98298 1.07898 1.18855 0.96350 0.80313 0.97990 1.83013 1.40564 1.38063 1.56025 1.24628 0.80625 0.95114 0.79962 1.90915 1.50066 1.47531 1.45721 1.85580 1.34161 1.01096 1.56220 1.22243 1.05427 0.97888 1.14826 0.89945 0.84918 0.87042 0.87338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.40 10.96 55.55 0.61 -16.79 14 2 C 0.08 1.70 5.15 -17.33 -0.09 1.61 14 3 Si 0.92 16.65 29.59 -169.99 -5.03 11.62 14 4 H -0.26 -4.68 7.11 56.52 0.40 -4.28 14 5 H -0.27 -4.86 7.11 56.52 0.40 -4.45 14 6 H -0.27 -4.72 7.11 56.52 0.40 -4.32 14 7 C -0.44 -10.48 8.83 -37.89 -0.33 -10.82 14 8 H 0.09 2.07 7.76 -52.49 -0.41 1.66 14 9 C 0.17 4.08 5.58 -106.61 -0.60 3.48 14 10 C -0.16 -3.69 8.68 -38.96 -0.34 -4.03 14 11 C -0.07 -1.34 9.97 -39.84 -0.40 -1.74 14 12 C -0.22 -4.64 10.06 -38.85 -0.39 -5.03 14 13 C 0.11 2.57 7.05 -38.78 -0.27 2.29 14 14 O -0.26 -5.93 10.05 -14.24 -0.14 -6.07 14 15 C 0.46 10.15 8.92 101.05 0.90 11.05 14 16 O -0.45 -10.28 18.05 -19.16 -0.35 -10.62 14 17 S -0.01 -0.18 22.99 -107.50 -2.47 -2.65 14 18 C -0.29 -6.84 6.34 -38.15 -0.24 -7.08 14 19 H 0.29 5.83 8.30 -40.82 -0.34 5.50 14 20 H 0.13 3.02 6.20 -52.49 -0.33 2.69 14 21 H 0.11 1.89 8.06 -52.49 -0.42 1.46 14 22 H 0.11 1.99 8.06 -52.49 -0.42 1.56 14 LS Contribution 221.93 15.07 3.34 3.34 Total: -1.00 -25.10 221.93 -6.51 -31.61 By element: Atomic # 1 Polarization: 0.54 SS G_CDS: -0.71 Total: -0.17 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: -1.76 Total: -10.26 kcal Atomic # 7 Polarization: -17.40 SS G_CDS: 0.61 Total: -16.79 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -0.49 Total: -16.70 kcal Atomic # 14 Polarization: 16.65 SS G_CDS: -5.03 Total: 11.62 kcal Atomic # 16 Polarization: -0.18 SS G_CDS: -2.47 Total: -2.65 kcal Total LS contribution 3.34 Total: 3.34 kcal Total: -25.10 -6.51 -31.61 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214631806.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.629 kcal (2) G-P(sol) polarization free energy of solvation -25.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds