Wall clock time and date at job start Mon Mar 30 2020 02:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30860 * 1 3 3 Si 1.86803 * 119.99639 * 2 1 4 4 H 1.48505 * 109.46961 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47081 * 299.99870 * 3 2 1 6 6 H 1.48494 * 109.47541 * 59.99833 * 3 2 1 7 7 C 1.39938 * 120.00095 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00105 * 163.21751 * 7 2 1 9 9 C 1.41013 * 120.00168 * 343.20990 * 7 2 1 10 10 C 1.40599 * 120.16575 * 334.42216 * 9 7 2 11 11 C 1.37502 * 119.41238 * 179.90150 * 10 9 7 12 12 C 1.38269 * 120.73144 * 0.10796 * 11 10 9 13 13 C 1.40157 * 121.21518 * 359.92815 * 12 11 10 14 14 O 1.34540 * 127.86673 * 180.02562 * 13 12 11 15 15 C 1.32208 * 117.14343 * 179.97438 * 14 13 12 16 16 O 1.21619 * 125.10449 * 180.02562 * 15 14 13 17 17 S 1.75791 * 109.79448 * 0.02562 * 15 14 13 18 18 C 1.38460 * 118.69649 * 359.97438 * 13 12 11 19 19 H 0.97001 * 120.00210 * 359.97438 * 1 2 3 20 20 H 1.07998 * 120.29157 * 0.02562 * 10 9 7 21 21 H 1.07997 * 119.63934 * 180.02562 * 11 10 9 22 22 H 1.07997 * 119.39358 * 180.20165 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 3.7026 1.3465 -0.0006 5 1 1.8837 2.3965 -1.2125 6 1 1.8838 2.3966 1.2124 7 6 2.0083 -1.2119 0.0005 8 1 3.0538 -1.2319 -0.2695 9 6 1.3484 -2.4069 0.3538 10 6 0.2197 -2.3697 1.1914 11 6 -0.4131 -3.5442 1.5244 12 6 0.0500 -4.7563 1.0468 13 6 1.1728 -4.8266 0.2109 14 8 1.7344 -5.9244 -0.3271 15 6 2.7979 -5.7448 -1.0918 16 8 3.4167 -6.6314 -1.6487 17 16 3.1834 -4.0321 -1.1827 18 6 1.8191 -3.6518 -0.1346 19 1 -0.4850 0.8400 0.0004 20 1 -0.1482 -1.4268 1.5682 21 1 -1.2806 -3.5198 2.1671 22 1 -0.4655 -5.6653 1.3194 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214631806.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:38 Heat of formation + Delta-G solvation = -57.162567 kcal Electronic energy + Delta-G solvation = -12377.547712 eV Core-core repulsion = 9988.802205 eV Total energy + Delta-G solvation = -2388.745506 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.014 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.80939 -39.68450 -38.39489 -35.60838 -32.08403 -30.92014 -27.93260 -26.17762 -23.88480 -22.62041 -20.90133 -18.70408 -18.41545 -18.23877 -17.47209 -17.13884 -16.28224 -15.25322 -14.81189 -14.71353 -14.52444 -13.85951 -13.54731 -12.99200 -12.92515 -12.58092 -12.28740 -12.06373 -11.50776 -11.39974 -11.16766 -10.93030 -9.42814 -9.04002 -8.81444 -6.59421 -0.13968 0.14204 0.54301 0.89490 0.91002 1.39112 1.40908 1.47833 1.54677 2.15271 2.51235 3.36020 4.04507 4.44105 4.67686 4.76809 4.92363 5.08420 5.27552 5.60464 5.66626 5.80470 5.85418 6.08068 6.39075 6.62946 6.66267 8.10494 Molecular weight = 222.01amu Principal moments of inertia in cm(-1) A = 0.036593 B = 0.010529 C = 0.008365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.984292 B = 2658.637147 C = 3346.500036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.045 3.955 3 Si 0.983 3.017 4 H -0.261 1.261 5 H -0.264 1.264 6 H -0.255 1.255 7 C -0.469 4.469 8 H 0.080 0.920 9 C 0.143 3.857 10 C -0.179 4.179 11 C -0.057 4.057 12 C -0.217 4.217 13 C 0.096 3.904 14 O -0.266 6.266 15 C 0.459 3.541 16 O -0.461 6.461 17 S 0.015 5.985 18 C -0.318 4.318 19 H 0.300 0.700 20 H 0.129 0.871 21 H 0.151 0.849 22 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.456 1.500 2.360 2.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.175 4.175 3 Si 0.803 3.197 4 H -0.184 1.184 5 H -0.189 1.189 6 H -0.180 1.180 7 C -0.496 4.496 8 H 0.098 0.902 9 C 0.137 3.863 10 C -0.200 4.200 11 C -0.076 4.076 12 C -0.238 4.238 13 C 0.048 3.952 14 O -0.178 6.178 15 C 0.196 3.804 16 O -0.354 6.354 17 S 0.253 5.747 18 C -0.432 4.432 19 H 0.111 0.889 20 H 0.146 0.854 21 H 0.169 0.831 22 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.525 1.699 1.459 2.300 hybrid contribution -0.539 -0.114 0.345 0.649 sum -0.014 1.585 1.803 2.401 Atomic orbital electron populations 1.69800 1.08808 1.31837 1.31217 1.26743 0.95587 1.04403 0.90771 0.85118 0.79356 0.75747 0.79491 1.18437 1.18877 1.17956 1.19868 0.98101 0.91881 1.39764 0.90164 1.17180 0.91542 0.89160 0.88405 1.21385 0.98873 0.98417 1.01370 1.20857 0.98648 0.90500 0.97554 1.19957 0.97790 0.99704 1.06378 1.19206 0.97116 0.80087 0.98745 1.82998 1.40622 1.38100 1.56047 1.24696 0.80548 0.95294 0.79824 1.90905 1.50431 1.47912 1.46187 1.85405 1.33409 1.00175 1.55673 1.22503 1.06573 0.98291 1.15858 0.88856 0.85363 0.83144 0.84390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -35.39 10.96 21.83 0.24 -35.15 14 2 C 0.04 1.97 5.15 85.25 0.44 2.40 14 3 Si 0.98 33.43 29.59 68.60 2.03 35.46 14 4 H -0.26 -8.99 7.11 99.48 0.71 -8.28 14 5 H -0.26 -8.70 7.11 99.48 0.71 -8.00 14 6 H -0.26 -8.17 7.11 99.48 0.71 -7.46 14 7 C -0.47 -22.55 8.83 23.36 0.21 -22.34 14 8 H 0.08 3.84 7.76 -2.91 -0.02 3.82 14 9 C 0.14 6.95 5.58 -21.15 -0.12 6.84 14 10 C -0.18 -8.00 8.68 22.67 0.20 -7.80 14 11 C -0.06 -2.17 9.97 22.10 0.22 -1.95 14 12 C -0.22 -8.53 10.06 22.74 0.23 -8.30 14 13 C 0.10 4.28 7.05 22.79 0.16 4.44 14 14 O -0.27 -11.68 10.05 36.86 0.37 -11.31 14 15 C 0.46 20.02 8.92 113.37 1.01 21.03 14 16 O -0.46 -20.78 18.05 19.26 0.35 -20.43 14 17 S 0.02 0.66 22.99 -56.49 -1.30 -0.64 14 18 C -0.32 -14.99 6.34 23.19 0.15 -14.84 14 19 H 0.30 11.81 8.30 -92.71 -0.77 11.04 14 20 H 0.13 5.78 6.20 -2.91 -0.02 5.76 14 21 H 0.15 4.52 8.06 -2.91 -0.02 4.50 14 22 H 0.14 4.56 8.06 -2.91 -0.02 4.53 14 Total: -1.00 -52.12 221.93 5.44 -46.67 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: 1.26 Total: 5.90 kcal Atomic # 6 Polarization: -23.01 SS G_CDS: 2.49 Total: -20.52 kcal Atomic # 7 Polarization: -35.39 SS G_CDS: 0.24 Total: -35.15 kcal Atomic # 8 Polarization: -32.45 SS G_CDS: 0.72 Total: -31.74 kcal Atomic # 14 Polarization: 33.43 SS G_CDS: 2.03 Total: 35.46 kcal Atomic # 16 Polarization: 0.66 SS G_CDS: -1.30 Total: -0.64 kcal Total: -52.12 5.44 -46.67 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214631806.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.489 kcal (2) G-P(sol) polarization free energy of solvation -52.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds