Wall clock time and date at job start Mon Mar 30 2020 03:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86804 * 120.00171 * 2 1 4 4 H 1.48494 * 109.47410 * 240.00062 * 3 2 1 5 5 H 1.48497 * 109.46998 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46877 * 119.99845 * 3 2 1 7 7 C 1.37879 * 120.00239 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00408 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99766 * 359.97438 * 7 2 1 10 10 F 1.39901 * 109.23942 * 299.44420 * 9 7 2 11 11 C 1.52585 * 109.24180 * 180.02562 * 9 7 2 12 12 C 1.53038 * 109.90192 * 169.80719 * 11 9 7 13 13 S 1.81464 * 109.10019 * 63.69676 * 12 11 9 14 14 O 1.42110 * 108.67495 * 191.31805 * 13 12 11 15 15 O 1.42095 * 108.77929 * 59.97697 * 13 12 11 16 16 C 1.81665 * 101.25863 * 305.62759 * 13 12 11 17 17 C 1.52594 * 109.20771 * 58.86727 * 9 7 2 18 18 H 0.97004 * 120.00236 * 0.02562 * 1 2 3 19 19 H 1.09002 * 109.38633 * 289.91403 * 11 9 7 20 20 H 1.09006 * 109.38646 * 49.70645 * 11 9 7 21 21 H 1.08995 * 109.55309 * 183.45345 * 12 11 9 22 22 H 1.09001 * 109.55070 * 303.74469 * 12 11 9 23 23 H 1.09001 * 109.55391 * 294.45223 * 16 13 12 24 24 H 1.09003 * 109.55199 * 174.16840 * 16 13 12 25 25 H 1.08996 * 109.38469 * 310.42306 * 17 9 7 26 26 H 1.09002 * 109.38427 * 70.21100 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 9 0.4586 -2.5740 1.1500 11 6 2.2472 -3.6550 -0.0005 12 6 1.5145 -4.9742 0.2541 13 16 0.3649 -5.2887 -1.1143 14 8 -0.4924 -6.3622 -0.7507 15 8 1.1053 -5.3693 -2.3244 16 6 -0.6021 -3.7508 -1.1257 17 6 0.3543 -2.5612 -1.2336 18 1 -0.4851 0.8401 -0.0004 19 1 2.7487 -3.7004 -0.9673 20 1 2.9871 -3.4949 0.7838 21 1 2.2377 -5.7875 0.3139 22 1 0.9593 -4.9084 1.1898 23 1 -1.1763 -3.6741 -0.2024 24 1 -1.2800 -3.7525 -1.9792 25 1 -0.2219 -1.6390 -1.3087 26 1 0.9717 -2.6755 -2.1246 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214632039.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:50 Heat of formation + Delta-G solvation = -151.038434 kcal Electronic energy + Delta-G solvation = -14266.710678 eV Core-core repulsion = 11578.958278 eV Total energy + Delta-G solvation = -2687.752399 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 222.051 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -47.82807 -38.14380 -37.06422 -36.96222 -34.41154 -32.59800 -29.49083 -25.75311 -24.42303 -21.35601 -19.65860 -18.91653 -17.75234 -17.19995 -16.88688 -16.74859 -15.94083 -15.63444 -15.32540 -14.47344 -14.00315 -13.62600 -13.50322 -13.41196 -13.12895 -13.04966 -12.77136 -12.73580 -12.59594 -12.37622 -12.25684 -11.64323 -11.42624 -10.83892 -10.60828 -10.58654 -8.18751 -6.45974 -0.81663 1.45324 1.45637 1.53353 1.78319 2.37705 2.72742 3.02639 3.12916 3.77957 3.80558 3.98604 4.09747 4.27334 4.38471 4.50262 4.81014 4.85474 5.09122 5.21164 5.53738 5.72238 5.93883 6.04608 6.62860 7.32368 8.81278 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.058531 B = 0.009906 C = 0.009722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.260619 B = 2825.821700 C = 2879.480927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.030 3.970 3 Si 0.961 3.039 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.576 4.576 8 H 0.073 0.927 9 C 0.210 3.790 10 F -0.240 7.240 11 C -0.121 4.121 12 C -0.591 4.591 13 S 2.435 3.565 14 O -0.981 6.981 15 O -0.971 6.971 16 C -0.590 4.590 17 C -0.129 4.129 18 H 0.267 0.733 19 H 0.096 0.904 20 H 0.091 0.909 21 H 0.161 0.839 22 H 0.142 0.858 23 H 0.132 0.868 24 H 0.143 0.857 25 H 0.099 0.901 26 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.843 -5.515 -0.744 5.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.173 4.173 3 Si 0.786 3.214 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.614 4.614 8 H 0.092 0.908 9 C 0.192 3.808 10 F -0.221 7.221 11 C -0.160 4.160 12 C -0.722 4.722 13 S 2.621 3.379 14 O -0.978 6.978 15 O -0.968 6.968 16 C -0.721 4.721 17 C -0.168 4.168 18 H 0.076 0.924 19 H 0.114 0.886 20 H 0.109 0.891 21 H 0.179 0.821 22 H 0.160 0.840 23 H 0.150 0.850 24 H 0.161 0.839 25 H 0.118 0.882 26 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.567 -6.181 -1.278 6.503 hybrid contribution 0.118 1.680 0.676 1.814 sum 1.685 -4.501 -0.602 4.844 Atomic orbital electron populations 1.69962 1.07217 1.27984 1.48050 1.25799 0.95710 1.02854 0.92958 0.85563 0.78410 0.78333 0.79093 1.18987 1.21016 1.19723 1.21744 0.94159 0.90891 1.54569 0.90837 1.18712 0.87021 0.94968 0.80084 1.92686 1.77442 1.97434 1.54546 1.21861 0.99125 0.89928 1.05081 1.30040 1.16036 1.07084 1.19051 1.07306 0.77117 0.76588 0.76849 1.93501 1.66882 1.52435 1.85001 1.93498 1.72196 1.86907 1.44190 1.30093 1.12856 1.17070 1.12072 1.21878 0.97446 0.98564 0.98913 0.92374 0.88586 0.89088 0.82131 0.83970 0.84977 0.83917 0.88231 0.90405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -47.82 10.88 21.45 0.23 -47.59 15 2 C 0.03 1.51 5.22 84.66 0.44 1.95 15 3 Si 0.96 40.38 29.54 68.60 2.03 42.41 15 4 H -0.27 -10.71 7.11 99.48 0.71 -10.01 15 5 H -0.28 -11.86 7.11 99.48 0.71 -11.15 15 6 H -0.27 -11.27 7.11 99.48 0.71 -10.56 15 7 C -0.58 -28.81 8.26 25.60 0.21 -28.60 15 8 H 0.07 3.52 7.74 -2.91 -0.02 3.49 15 9 C 0.21 9.37 0.75 -11.81 -0.01 9.36 15 10 F -0.24 -11.63 14.45 44.97 0.65 -10.98 15 11 C -0.12 -4.26 4.81 30.47 0.15 -4.11 15 12 C -0.59 -16.92 6.18 71.99 0.44 -16.48 15 13 S 2.44 76.99 5.30 -56.49 -0.30 76.69 15 14 O -0.98 -35.01 18.10 -127.38 -2.31 -37.31 15 15 O -0.97 -35.24 17.95 -127.38 -2.29 -37.53 15 16 C -0.59 -20.13 6.20 71.99 0.45 -19.69 15 17 C -0.13 -5.42 4.73 30.47 0.14 -5.28 15 18 H 0.27 13.62 8.31 -92.71 -0.77 12.85 15 19 H 0.10 3.15 8.02 -2.39 -0.02 3.13 15 20 H 0.09 3.08 8.10 -2.38 -0.02 3.06 15 21 H 0.16 3.44 8.14 -2.39 -0.02 3.42 15 22 H 0.14 3.94 7.48 -2.39 -0.02 3.92 15 23 H 0.13 4.52 7.49 -2.39 -0.02 4.50 15 24 H 0.14 4.15 8.14 -2.39 -0.02 4.13 15 25 H 0.10 4.82 5.71 -2.39 -0.01 4.80 15 26 H 0.08 3.07 8.01 -2.39 -0.02 3.05 15 Total: -1.00 -63.54 230.83 1.03 -62.51 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 1.18 Total: 14.64 kcal Atomic # 6 Polarization: -64.67 SS G_CDS: 1.83 Total: -62.85 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: 0.23 Total: -47.59 kcal Atomic # 8 Polarization: -70.25 SS G_CDS: -4.59 Total: -74.84 kcal Atomic # 9 Polarization: -11.63 SS G_CDS: 0.65 Total: -10.98 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 2.03 Total: 42.41 kcal Atomic # 16 Polarization: 76.99 SS G_CDS: -0.30 Total: 76.69 kcal Total: -63.54 1.03 -62.51 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214632039.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.525 kcal (2) G-P(sol) polarization free energy of solvation -63.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds