Wall clock time and date at job start Mon Mar 30 2020 02:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30714 * 1 3 3 Si 1.86795 * 120.00303 * 2 1 4 4 H 1.48506 * 109.47274 * 240.00401 * 3 2 1 5 5 H 1.48508 * 109.47042 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47638 * 119.99708 * 3 2 1 7 7 C 1.40266 * 119.99675 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99722 * 179.97438 * 7 2 1 9 9 C 1.39723 * 120.00137 * 0.02562 * 7 2 1 10 10 C 1.39023 * 125.54145 * 180.25936 * 9 7 2 11 11 C 1.41220 * 106.60457 * 180.14226 * 10 9 7 12 12 C 1.40293 * 133.52605 * 179.90281 * 11 10 9 13 13 C 1.36543 * 119.76132 * 179.64209 * 12 11 10 14 14 C 1.38859 * 120.48145 * 0.04434 * 13 12 11 15 15 C 1.38165 * 120.71924 * 359.97308 * 14 13 12 16 16 Cl 1.73608 * 120.04120 * 180.02562 * 15 14 13 17 17 C 1.38827 * 119.91676 * 0.02562 * 15 14 13 18 18 O 1.35057 * 132.79392 * 180.02562 * 17 15 14 19 19 H 0.97002 * 119.99574 * 359.97438 * 1 2 3 20 20 H 1.07998 * 126.69645 * 359.77632 * 10 9 7 21 21 H 1.07996 * 120.12624 * 359.68474 * 12 11 10 22 22 H 1.07998 * 119.76218 * 179.97438 * 13 12 11 23 23 H 1.07997 * 119.63775 * 179.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2412 1.6176 0.0000 4 1 3.0949 1.6963 -1.2126 5 1 1.2762 2.7465 -0.0006 6 1 3.0949 1.6964 1.2125 7 6 2.0084 -1.2148 0.0005 8 1 3.0884 -1.2148 0.0001 9 6 1.3097 -2.4248 0.0005 10 6 1.8853 -3.6903 0.0062 11 6 0.8205 -4.6179 0.0005 12 6 0.7602 -6.0196 0.0005 13 6 -0.4532 -6.6457 0.0014 14 6 -1.6279 -5.9054 0.0014 15 6 -1.5917 -4.5242 0.0011 16 17 -3.0713 -3.6160 0.0019 17 6 -0.3707 -3.8636 0.0002 18 8 -0.0353 -2.5553 0.0002 19 1 -0.4849 0.8401 0.0004 20 1 2.9407 -3.9192 0.0079 21 1 1.6701 -6.6013 0.0004 22 1 -0.4996 -7.7247 0.0009 23 1 -2.5802 -6.4147 0.0017 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214667744.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:02 Heat of formation + Delta-G solvation = -20.899476 kcal Electronic energy + Delta-G solvation = -12370.440577 eV Core-core repulsion = 9981.223850 eV Total energy + Delta-G solvation = -2389.216727 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.019 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.63465 -38.60516 -37.21927 -35.76295 -33.19070 -31.01295 -30.70994 -27.36616 -23.51426 -22.96063 -21.81930 -19.78866 -18.02285 -17.14873 -17.09999 -16.52308 -15.97477 -15.31679 -14.74691 -14.02178 -13.75539 -13.67068 -13.12902 -13.00605 -12.91273 -12.59032 -12.32222 -11.99200 -11.91979 -11.66878 -11.43134 -10.57217 -9.40582 -8.94887 -8.93304 -6.64537 0.18653 0.70552 1.26103 1.30258 1.36021 1.53138 1.88724 2.10575 2.51980 2.91207 3.12286 4.08476 4.33910 4.36818 4.56188 4.70692 4.90529 5.05297 5.24387 5.27313 5.47078 5.68916 5.74430 5.87679 6.09742 6.39823 6.46105 6.95244 8.06021 Molecular weight = 222.02amu Principal moments of inertia in cm(-1) A = 0.037877 B = 0.009605 C = 0.007683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.063417 B = 2914.506529 C = 3643.726721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.019 3.981 3 Si 1.012 2.988 4 H -0.249 1.249 5 H -0.265 1.265 6 H -0.249 1.249 7 C -0.450 4.450 8 H 0.126 0.874 9 C 0.205 3.795 10 C -0.443 4.443 11 C -0.058 4.058 12 C -0.147 4.147 13 C -0.098 4.098 14 C -0.160 4.160 15 C -0.015 4.015 16 Cl -0.084 7.084 17 C -0.063 4.063 18 O -0.186 6.186 19 H 0.300 0.700 20 H 0.135 0.865 21 H 0.138 0.862 22 H 0.167 0.833 23 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.742 -3.829 -0.003 3.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.201 4.201 3 Si 0.829 3.171 4 H -0.173 1.173 5 H -0.189 1.189 6 H -0.173 1.173 7 C -0.477 4.477 8 H 0.144 0.856 9 C 0.154 3.846 10 C -0.464 4.464 11 C -0.059 4.059 12 C -0.165 4.165 13 C -0.116 4.116 14 C -0.178 4.178 15 C -0.042 4.042 16 Cl -0.055 7.055 17 C -0.111 4.111 18 O -0.087 6.087 19 H 0.111 0.889 20 H 0.153 0.847 21 H 0.156 0.844 22 H 0.185 0.815 23 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -1.317 -3.431 -0.003 3.675 hybrid contribution 0.124 0.802 -0.005 0.812 sum -1.193 -2.629 -0.008 2.887 Atomic orbital electron populations 1.69817 1.09693 1.32368 1.29765 1.27442 0.95865 1.06152 0.90648 0.84795 0.78355 0.73000 0.80952 1.17292 1.18925 1.17282 1.19527 0.95992 0.87940 1.44215 0.85582 1.20191 0.78699 0.95733 0.89979 1.21201 0.97938 0.90512 1.36734 1.19120 0.92163 0.95215 0.99422 1.20592 0.99534 0.90813 1.05568 1.20873 0.90242 1.00998 0.99463 1.20839 1.00775 0.88697 1.07527 1.20037 0.82495 0.92237 1.09417 1.98296 1.34273 1.75776 1.97205 1.19927 0.95072 0.83949 1.12129 1.84615 1.24287 1.22585 1.77251 0.88851 0.84745 0.84438 0.81519 0.82466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -41.54 11.96 21.89 0.26 -41.28 14 2 C 0.02 0.94 5.50 85.35 0.47 1.41 14 3 Si 1.01 35.11 29.56 68.60 2.03 37.14 14 4 H -0.25 -8.21 7.11 99.48 0.71 -7.50 14 5 H -0.27 -8.75 7.11 99.48 0.71 -8.04 14 6 H -0.25 -8.20 7.11 99.48 0.71 -7.50 14 7 C -0.45 -23.53 9.30 23.12 0.22 -23.31 14 8 H 0.13 5.93 7.85 -2.91 -0.02 5.91 14 9 C 0.20 11.62 6.75 22.82 0.15 11.77 14 10 C -0.44 -23.39 10.95 23.19 0.25 -23.14 14 11 C -0.06 -2.88 6.17 -21.37 -0.13 -3.01 14 12 C -0.15 -5.75 10.08 22.37 0.23 -5.52 14 13 C -0.10 -3.21 9.97 22.02 0.22 -2.99 14 14 C -0.16 -5.70 9.81 22.40 0.22 -5.48 14 15 C -0.01 -0.66 6.33 22.39 0.14 -0.52 14 16 Cl -0.08 -3.47 28.96 -2.72 -0.08 -3.55 14 17 C -0.06 -3.34 7.16 23.09 0.17 -3.18 14 18 O -0.19 -10.92 8.90 -18.43 -0.16 -11.09 14 19 H 0.30 14.00 8.29 -92.71 -0.77 13.24 14 20 H 0.13 6.50 8.06 -2.91 -0.02 6.47 14 21 H 0.14 4.55 8.06 -2.91 -0.02 4.53 14 22 H 0.17 3.80 8.06 -2.91 -0.02 3.77 14 23 H 0.16 4.43 8.06 -2.91 -0.02 4.41 14 Total: -1.00 -62.67 231.09 5.21 -57.45 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: 1.24 Total: 15.29 kcal Atomic # 6 Polarization: -55.90 SS G_CDS: 1.93 Total: -53.97 kcal Atomic # 7 Polarization: -41.54 SS G_CDS: 0.26 Total: -41.28 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: -0.16 Total: -11.09 kcal Atomic # 14 Polarization: 35.11 SS G_CDS: 2.03 Total: 37.14 kcal Atomic # 17 Polarization: -3.47 SS G_CDS: -0.08 Total: -3.55 kcal Total: -62.67 5.21 -57.45 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214667744.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.555 kcal (2) G-P(sol) polarization free energy of solvation -62.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds