Wall clock time and date at job start Mon Mar 30 2020 02:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31024 * 1 3 3 Si 1.86794 * 120.00328 * 2 1 4 4 H 1.48502 * 109.47137 * 270.00373 * 3 2 1 5 5 H 1.48498 * 109.47392 * 30.00548 * 3 2 1 6 6 H 1.48501 * 109.47248 * 150.00348 * 3 2 1 7 7 C 1.39674 * 119.99622 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00219 * 179.97438 * 7 2 1 9 9 C 1.41168 * 120.00114 * 359.97438 * 7 2 1 10 10 N 1.34783 * 126.18503 * 359.97438 * 9 7 2 11 11 C 1.32478 * 109.20824 * 179.97438 * 10 9 7 12 12 C 1.41037 * 131.60506 * 180.02562 * 11 10 9 13 13 C 1.36050 * 119.42174 * 179.97438 * 12 11 10 14 14 C 1.40525 * 119.76239 * 0.02562 * 13 12 11 15 15 C 1.34897 * 120.29860 * 359.97423 * 14 13 12 16 16 N 1.36815 * 120.63131 * 0.02562 * 15 14 13 17 17 C 1.36248 * 132.02520 * 179.97438 * 16 15 14 18 18 Cl 1.73599 * 126.66030 * 359.97438 * 17 16 15 19 19 H 0.97000 * 119.99657 * 359.97438 * 1 2 3 20 20 H 1.08002 * 120.28624 * 0.02562 * 12 11 10 21 21 H 1.07997 * 120.11493 * 180.27408 * 13 12 11 22 22 H 1.07998 * 119.84626 * 179.97438 * 14 13 12 23 23 H 1.08002 * 119.67893 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2443 1.6176 0.0000 4 1 2.4918 2.0463 -1.4001 5 1 1.4419 2.6526 0.7001 6 1 3.5419 1.4400 0.7000 7 6 2.0085 -1.2097 -0.0005 8 1 3.0885 -1.2098 -0.0010 9 6 1.3026 -2.4322 -0.0005 10 7 -0.0374 -2.5773 0.0004 11 6 -0.3360 -3.8680 -0.0005 12 6 -1.5745 -4.5427 -0.0005 13 6 -1.5945 -5.9031 -0.0021 14 6 -0.3850 -6.6185 -0.0032 15 6 0.7938 -5.9625 -0.0031 16 7 0.8304 -4.5949 -0.0015 17 6 1.8666 -3.7102 -0.0006 18 17 3.5591 -4.0962 -0.0007 19 1 -0.4850 0.8401 0.0004 20 1 -2.4989 -3.9843 -0.0001 21 1 -2.5365 -6.4311 -0.0067 22 1 -0.3993 -7.6984 -0.0040 23 1 1.7173 -6.5224 -0.0035 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214667816.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:26 Heat of formation + Delta-G solvation = 54.114476 kcal Electronic energy + Delta-G solvation = -12424.237518 eV Core-core repulsion = 10070.566391 eV Total energy + Delta-G solvation = -2353.671127 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.025 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.86815 -37.93236 -37.15978 -35.25058 -33.96134 -31.15021 -29.34618 -27.43705 -23.91870 -23.05642 -22.15125 -19.12519 -18.10885 -17.55660 -16.55727 -16.45898 -16.10281 -15.34493 -15.07287 -14.56423 -13.26954 -13.13778 -13.01459 -12.84816 -12.42971 -12.42435 -12.25092 -12.07014 -11.80906 -11.42785 -11.06398 -10.24164 -9.41941 -8.43524 -8.37338 -6.37874 0.16791 0.63805 1.13968 1.41562 1.42429 1.56781 2.23474 2.25924 2.50956 2.89480 3.53038 3.75159 3.94814 4.26960 4.37557 4.56341 4.96998 5.16849 5.27492 5.41350 5.49772 5.53862 5.92064 6.18617 6.58713 6.73473 6.97372 7.71679 8.50367 Molecular weight = 222.03amu Principal moments of inertia in cm(-1) A = 0.034755 B = 0.010608 C = 0.008150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.454187 B = 2638.945341 C = 3434.557514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.025 3.975 3 Si 0.991 3.009 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.255 1.255 7 C -0.462 4.462 8 H 0.090 0.910 9 C 0.227 3.773 10 N -0.523 5.523 11 C 0.201 3.799 12 C -0.128 4.128 13 C -0.086 4.086 14 C -0.163 4.163 15 C 0.032 3.968 16 N -0.351 5.351 17 C -0.204 4.204 18 Cl -0.029 7.029 19 H 0.280 0.720 20 H 0.145 0.855 21 H 0.177 0.823 22 H 0.187 0.813 23 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.339 -9.147 -0.007 9.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.193 4.193 3 Si 0.811 3.189 4 H -0.187 1.187 5 H -0.192 1.192 6 H -0.179 1.179 7 C -0.495 4.495 8 H 0.108 0.892 9 C 0.100 3.900 10 N -0.249 5.249 11 C -0.041 4.041 12 C -0.149 4.149 13 C -0.110 4.110 14 C -0.185 4.185 15 C -0.093 4.093 16 N -0.027 5.027 17 C -0.338 4.338 18 Cl -0.001 7.001 19 H 0.090 0.910 20 H 0.163 0.837 21 H 0.194 0.806 22 H 0.204 0.796 23 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -0.833 -8.352 -0.002 8.394 hybrid contribution 1.207 0.113 -0.011 1.212 sum 0.373 -8.239 -0.013 8.247 Atomic orbital electron populations 1.70226 1.08747 1.29319 1.32990 1.26905 0.95754 1.04523 0.92151 0.85084 0.78881 0.75504 0.79462 1.18661 1.19225 1.17866 1.19059 0.94416 0.88937 1.47100 0.89223 1.18619 0.87929 0.90791 0.92628 1.71713 1.13952 1.11342 1.27941 1.22038 0.87955 0.88509 1.05587 1.20433 0.93139 0.95350 1.06014 1.21344 1.00184 0.91903 0.97529 1.21049 0.89715 1.02168 1.05554 1.22137 1.02396 0.80609 1.04132 1.42329 1.07547 1.06233 1.46583 1.21532 0.80833 0.89027 1.42440 1.98172 1.09082 1.94400 1.98435 0.91028 0.83695 0.80564 0.79608 0.81800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -45.27 11.93 21.78 0.26 -45.01 14 2 C 0.02 1.35 5.49 85.16 0.47 1.82 14 3 Si 0.99 40.47 29.56 68.60 2.03 42.50 14 4 H -0.26 -10.27 7.11 99.48 0.71 -9.56 14 5 H -0.27 -10.38 7.11 99.48 0.71 -9.68 14 6 H -0.26 -10.01 7.11 99.48 0.71 -9.31 14 7 C -0.46 -26.63 9.22 23.34 0.22 -26.41 14 8 H 0.09 4.90 7.76 -2.91 -0.02 4.87 14 9 C 0.23 13.41 6.67 39.76 0.27 13.67 14 10 N -0.52 -31.05 9.52 -186.40 -1.77 -32.82 14 11 C 0.20 10.03 7.77 134.04 1.04 11.08 14 12 C -0.13 -4.86 10.11 22.45 0.23 -4.64 14 13 C -0.09 -2.36 10.07 22.32 0.22 -2.13 14 14 C -0.16 -4.25 9.99 22.06 0.22 -4.03 14 15 C 0.03 1.10 10.90 83.15 0.91 2.01 14 16 N -0.35 -16.31 2.94 -338.32 -0.99 -17.30 14 17 C -0.20 -10.54 7.72 84.36 0.65 -9.89 14 18 Cl -0.03 -1.22 29.04 -2.72 -0.08 -1.30 14 19 H 0.28 14.50 8.30 -92.71 -0.77 13.73 14 20 H 0.15 5.12 8.06 -2.91 -0.02 5.10 14 21 H 0.18 3.07 8.06 -2.91 -0.02 3.05 14 22 H 0.19 2.94 8.06 -2.91 -0.02 2.91 14 23 H 0.16 4.77 8.06 -2.91 -0.02 4.74 14 Total: -1.00 -71.49 230.51 4.89 -66.59 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: 1.23 Total: 5.87 kcal Atomic # 6 Polarization: -22.75 SS G_CDS: 4.22 Total: -18.53 kcal Atomic # 7 Polarization: -92.63 SS G_CDS: -2.51 Total: -95.13 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 2.03 Total: 42.50 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -0.08 Total: -1.30 kcal Total: -71.49 4.89 -66.59 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214667816.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.709 kcal (2) G-P(sol) polarization free energy of solvation -71.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds