Wall clock time and date at job start Mon Mar 30 2020 02:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30810 * 1 3 3 Si 1.86796 * 120.00234 * 2 1 4 4 H 1.48498 * 109.47068 * 240.00111 * 3 2 1 5 5 H 1.48508 * 109.46909 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47173 * 119.99545 * 3 2 1 7 7 C 1.40034 * 119.99712 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99748 * 164.18607 * 7 2 1 9 9 C 1.40162 * 120.00081 * 344.18071 * 7 2 1 10 10 C 1.40506 * 120.76450 * 333.49597 * 9 7 2 11 11 C 1.38117 * 121.10262 * 180.02562 * 10 9 7 12 12 C 1.37499 * 122.59289 * 359.95463 * 11 10 9 13 13 C 1.40978 * 120.71943 * 0.04600 * 12 11 10 14 14 N 1.32230 * 134.52471 * 179.65918 * 13 12 11 15 15 N 1.39981 * 108.85981 * 179.91768 * 14 13 12 16 16 H 0.97002 * 125.11067 * 180.19524 * 15 14 13 17 17 C 1.34647 * 109.77743 * 0.39502 * 15 14 13 18 18 Cl 1.73601 * 126.04230 * 179.73928 * 17 15 14 19 19 C 1.37332 * 107.91894 * 359.76420 * 17 15 14 20 20 H 0.97001 * 119.99950 * 0.02562 * 1 2 3 21 21 H 1.08001 * 119.45054 * 359.97438 * 10 9 7 22 22 H 1.07997 * 118.70976 * 179.97438 * 11 10 9 23 23 H 1.08003 * 119.64500 * 180.02562 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 3.0959 1.6963 -1.2125 5 1 1.2771 2.7464 -0.0006 6 1 3.0958 1.6963 1.2125 7 6 2.0082 -1.2128 0.0005 8 1 3.0575 -1.2306 -0.2543 9 6 1.3472 -2.4034 0.3320 10 6 0.2174 -2.3898 1.1673 11 6 -0.4390 -3.5589 1.4988 12 6 -0.0358 -4.7905 1.0392 13 6 1.0867 -4.9121 0.1951 14 7 1.7038 -5.9266 -0.3867 15 7 2.7852 -5.4343 -1.1266 16 1 3.3966 -5.9765 -1.6494 17 6 2.8520 -4.0954 -1.0002 18 17 4.0338 -3.0577 -1.7350 19 6 1.8202 -3.6959 -0.1866 20 1 -0.4850 0.8401 -0.0004 21 1 -0.1432 -1.4494 1.5573 22 1 -1.3031 -3.5036 2.1441 23 1 -0.5849 -5.6745 1.3283 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214667888.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:06 Heat of formation + Delta-G solvation = 56.317958 kcal Electronic energy + Delta-G solvation = -12463.290540 eV Core-core repulsion = 10109.714963 eV Total energy + Delta-G solvation = -2353.575577 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.025 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.64857 -37.87946 -37.62466 -35.42168 -32.42637 -31.41029 -29.44626 -27.19105 -24.42518 -22.33811 -21.41288 -19.01262 -18.84462 -17.33766 -17.06775 -16.15202 -15.84485 -14.85326 -14.74691 -14.16320 -13.53093 -13.22887 -13.05807 -12.94848 -12.55251 -12.28973 -12.13115 -11.96194 -11.55723 -11.16328 -10.86243 -10.46811 -9.40109 -8.80751 -8.44915 -6.31454 0.01321 0.46354 1.32728 1.38708 1.42879 1.54604 1.79244 2.16763 2.33760 2.72992 3.62452 3.70472 4.38591 4.59109 4.69768 5.00363 5.09441 5.26019 5.52097 5.81602 6.00454 6.14998 6.31034 6.41765 6.57429 6.72958 6.82594 7.06776 8.13458 Molecular weight = 222.03amu Principal moments of inertia in cm(-1) A = 0.027063 B = 0.013207 C = 0.009091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.363309 B = 2119.606833 C = 3079.329019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.035 3.965 3 Si 0.983 3.017 4 H -0.253 1.253 5 H -0.263 1.263 6 H -0.255 1.255 7 C -0.425 4.425 8 H 0.100 0.900 9 C 0.148 3.852 10 C -0.302 4.302 11 C -0.004 4.004 12 C -0.320 4.320 13 C 0.139 3.861 14 N -0.363 5.363 15 N -0.446 5.446 16 H 0.449 0.551 17 C 0.154 3.846 18 Cl 0.016 6.984 19 C -0.239 4.239 20 H 0.299 0.701 21 H 0.107 0.893 22 H 0.114 0.886 23 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.034 1.582 -2.485 6.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.187 4.187 3 Si 0.802 3.198 4 H -0.177 1.177 5 H -0.187 1.187 6 H -0.179 1.179 7 C -0.452 4.452 8 H 0.118 0.882 9 C 0.143 3.857 10 C -0.323 4.323 11 C -0.026 4.026 12 C -0.344 4.344 13 C -0.011 4.011 14 N -0.195 5.195 15 N -0.154 5.154 16 H 0.296 0.704 17 C -0.006 4.006 18 Cl 0.044 6.956 19 C -0.250 4.250 20 H 0.111 0.889 21 H 0.125 0.875 22 H 0.132 0.868 23 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 5.927 0.500 -2.755 6.555 hybrid contribution 0.443 1.057 -0.293 1.183 sum 6.370 1.557 -3.049 7.232 Atomic orbital electron populations 1.69892 1.09396 1.31906 1.28694 1.27004 0.95535 1.04911 0.91240 0.85211 0.79040 0.74836 0.80722 1.17689 1.18740 1.17853 1.20089 0.98524 0.91380 1.35234 0.88162 1.18214 0.91303 0.88777 0.87454 1.20641 1.04547 0.96978 1.10177 1.20532 0.96011 0.91788 0.94273 1.19211 1.03206 0.97345 1.14641 1.20913 0.95386 0.89565 0.95273 1.77580 1.03651 1.18469 1.19753 1.46119 1.25824 1.02737 1.40732 0.70437 1.21328 0.94637 0.84837 0.99833 1.98359 1.53765 1.62977 1.80525 1.20729 0.99979 0.96657 1.07683 0.88949 0.87512 0.86802 0.87835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -36.81 10.98 21.84 0.24 -36.57 14 2 C 0.03 1.56 5.16 85.28 0.44 2.00 14 3 Si 0.98 33.35 29.59 68.60 2.03 35.38 14 4 H -0.25 -8.24 7.11 99.48 0.71 -7.53 14 5 H -0.26 -8.44 7.11 99.48 0.71 -7.73 14 6 H -0.25 -8.47 7.11 99.48 0.71 -7.76 14 7 C -0.43 -20.62 8.67 23.17 0.20 -20.42 14 8 H 0.10 4.51 6.26 -2.91 -0.02 4.49 14 9 C 0.15 7.75 5.71 -19.94 -0.11 7.63 14 10 C -0.30 -15.75 8.65 22.79 0.20 -15.55 14 11 C 0.00 -0.20 9.86 22.07 0.22 0.02 14 12 C -0.32 -15.76 10.09 22.77 0.23 -15.53 14 13 C 0.14 7.03 7.48 42.07 0.31 7.34 14 14 N -0.36 -16.81 12.72 -48.78 -0.62 -17.43 14 15 N -0.45 -17.12 7.22 -49.37 -0.36 -17.48 14 16 H 0.45 12.83 8.96 -213.39 -1.91 10.92 14 17 C 0.15 6.43 7.88 84.05 0.66 7.09 14 18 Cl 0.02 0.54 27.33 -2.72 -0.07 0.46 14 19 C -0.24 -11.94 6.32 -18.85 -0.12 -12.06 14 20 H 0.30 12.57 8.30 -92.71 -0.77 11.80 14 21 H 0.11 5.64 6.21 -2.91 -0.02 5.62 14 22 H 0.11 4.75 8.06 -2.91 -0.02 4.73 14 23 H 0.10 4.71 8.06 -2.91 -0.02 4.69 14 Total: -1.00 -58.50 224.83 2.60 -55.89 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: -0.64 Total: 19.22 kcal Atomic # 6 Polarization: -41.51 SS G_CDS: 2.03 Total: -39.48 kcal Atomic # 7 Polarization: -70.74 SS G_CDS: -0.74 Total: -71.48 kcal Atomic # 14 Polarization: 33.35 SS G_CDS: 2.03 Total: 35.38 kcal Atomic # 17 Polarization: 0.54 SS G_CDS: -0.07 Total: 0.46 kcal Total: -58.50 2.60 -55.89 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214667888.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.212 kcal (2) G-P(sol) polarization free energy of solvation -58.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds