Wall clock time and date at job start Mon Mar 30 2020 02:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30864 * 1 3 3 Si 1.86802 * 120.00346 * 2 1 4 4 H 1.48503 * 109.46896 * 0.02562 * 3 2 1 5 5 H 1.48491 * 109.46830 * 120.00500 * 3 2 1 6 6 H 1.48502 * 109.46848 * 240.00307 * 3 2 1 7 7 C 1.39977 * 119.99531 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99433 * 154.58287 * 7 2 1 9 9 C 1.40202 * 119.99847 * 334.58431 * 7 2 1 10 10 C 1.40415 * 120.75228 * 334.66820 * 9 7 2 11 11 C 1.38091 * 121.20018 * 179.97438 * 10 9 7 12 12 C 1.37584 * 122.50400 * 0.02562 * 11 10 9 13 13 C 1.40735 * 120.66925 * 0.02562 * 12 11 10 14 14 C 1.38764 * 134.76408 * 180.02562 * 13 12 11 15 15 Cl 1.73598 * 126.16312 * 359.97438 * 14 13 12 16 16 N 1.34306 * 107.67468 * 179.34949 * 14 13 12 17 17 H 0.96995 * 125.05888 * 180.02562 * 16 14 13 18 18 N 1.39964 * 109.87003 * 0.51865 * 16 14 13 19 19 C 1.31222 * 109.16096 * 359.54318 * 18 16 14 20 20 H 0.97002 * 120.00621 * 174.18712 * 1 2 3 21 21 H 1.08001 * 119.40191 * 359.97438 * 10 9 7 22 22 H 1.08005 * 118.75150 * 180.02562 * 11 10 9 23 23 H 1.07998 * 119.66754 * 180.02562 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 1.2777 2.7465 0.0006 5 1 3.0965 1.6962 1.2124 6 1 3.0964 1.6963 -1.2126 7 6 2.0084 -1.2123 -0.0005 8 1 3.0100 -1.2574 -0.4020 9 6 1.4091 -2.3679 0.5201 10 6 0.3952 -2.2774 1.4873 11 6 -0.2018 -3.4094 2.0060 12 6 0.1546 -4.6790 1.6135 13 6 1.1612 -4.8766 0.6499 14 6 1.7386 -5.9887 0.0539 15 17 1.3317 -7.6467 0.3686 16 7 2.6592 -5.5509 -0.8205 17 1 3.2142 -6.1196 -1.3767 18 7 2.7063 -4.1522 -0.8013 19 6 1.8255 -3.7034 0.0617 20 1 -0.4851 -0.8357 -0.0851 21 1 0.0766 -1.3047 1.8320 22 1 -0.9780 -3.2938 2.7480 23 1 -0.3432 -5.5327 2.0491 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214668115.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:50 Heat of formation + Delta-G solvation = 66.367104 kcal Electronic energy + Delta-G solvation = -12327.210824 eV Core-core repulsion = 9974.071011 eV Total energy + Delta-G solvation = -2353.139813 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.025 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.08530 -36.44506 -36.07474 -33.76555 -30.79453 -29.35762 -27.98659 -25.12254 -22.71210 -20.66009 -19.90515 -17.94452 -17.00494 -16.00076 -14.71493 -14.31678 -14.21222 -13.72293 -12.88907 -12.65280 -12.16100 -11.61644 -11.39784 -11.26633 -10.73752 -10.56344 -10.44926 -10.28007 -10.12906 -9.42148 -9.15558 -8.92621 -7.81433 -7.55926 -6.82543 -4.44057 1.65021 2.10810 2.92280 3.06157 3.09742 3.26486 3.43430 3.73229 3.84421 4.40166 5.26054 5.31256 5.94070 6.11488 6.34901 6.76175 6.94772 7.16466 7.28764 7.50740 7.57576 7.76072 7.88586 7.99115 8.18017 8.26474 8.53510 8.70813 9.72646 Molecular weight = 222.03amu Principal moments of inertia in cm(-1) A = 0.052231 B = 0.008170 C = 0.007251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.946333 B = 3426.252817 C = 3860.500441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.757 5.757 2 C 0.030 3.970 3 Si 1.069 2.931 4 H -0.270 1.270 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.446 4.446 8 H 0.088 0.912 9 C 0.130 3.870 10 C -0.315 4.315 11 C -0.024 4.024 12 C -0.270 4.270 13 C -0.086 4.086 14 C 0.038 3.962 15 Cl -0.033 7.033 16 N -0.458 5.458 17 H 0.430 0.570 18 N -0.265 5.265 19 C 0.082 3.918 20 H 0.310 0.690 21 H 0.108 0.892 22 H 0.089 0.911 23 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.313 -4.781 -0.277 5.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.378 5.378 2 C -0.196 4.196 3 Si 0.891 3.109 4 H -0.194 1.194 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.473 4.473 8 H 0.106 0.894 9 C 0.124 3.876 10 C -0.337 4.337 11 C -0.044 4.044 12 C -0.291 4.291 13 C -0.097 4.097 14 C -0.116 4.116 15 Cl -0.006 7.006 16 N -0.169 5.169 17 H 0.273 0.727 18 N -0.092 5.092 19 C -0.078 4.078 20 H 0.125 0.875 21 H 0.126 0.874 22 H 0.107 0.893 23 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.854 -2.989 -1.019 4.256 hybrid contribution -0.200 -2.751 0.208 2.766 sum 2.654 -5.740 -0.811 6.375 Atomic orbital electron populations 1.70411 1.08225 1.35565 1.23623 1.27342 0.95671 1.04671 0.91881 0.83567 0.75717 0.73136 0.78476 1.19394 1.19488 1.19698 1.20758 1.02661 0.93747 1.30175 0.89367 1.17681 0.92239 0.86353 0.91318 1.20331 1.09138 0.97237 1.06958 1.20170 0.95937 0.92259 0.96010 1.19282 1.06031 0.95899 1.07897 1.18877 1.00822 0.88694 1.01281 1.20978 1.02287 0.85260 1.03027 1.98309 1.92551 1.15060 1.94643 1.45898 1.31655 1.05719 1.33609 0.72692 1.77127 1.23327 0.85366 1.23394 1.22481 0.94873 0.95387 0.95070 0.87543 0.87382 0.89321 0.89056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.82 12.32 55.55 0.68 -18.13 14 2 C 0.03 0.72 4.94 -17.31 -0.09 0.63 14 3 Si 1.07 19.95 30.00 -169.99 -5.10 14.85 14 4 H -0.27 -4.97 7.11 56.52 0.40 -4.57 14 5 H -0.27 -4.87 7.11 56.52 0.40 -4.47 14 6 H -0.27 -4.83 7.11 56.52 0.40 -4.43 14 7 C -0.45 -11.33 9.00 -38.19 -0.34 -11.68 14 8 H 0.09 2.20 7.96 -52.49 -0.42 1.79 14 9 C 0.13 3.41 5.46 -104.70 -0.57 2.84 14 10 C -0.31 -7.92 7.92 -38.82 -0.31 -8.23 14 11 C -0.02 -0.56 9.87 -39.87 -0.39 -0.95 14 12 C -0.27 -6.27 10.09 -38.88 -0.39 -6.67 14 13 C -0.09 -2.06 6.33 -105.17 -0.67 -2.72 14 14 C 0.04 0.77 7.93 -16.27 -0.13 0.64 14 15 Cl -0.03 -0.54 29.32 -51.86 -1.52 -2.06 14 16 N -0.46 -8.95 7.20 33.26 0.24 -8.71 14 17 H 0.43 6.51 8.96 -182.70 -1.64 4.87 14 18 N -0.27 -6.25 12.65 34.42 0.44 -5.81 14 19 C 0.08 2.08 7.46 -80.89 -0.60 1.48 14 20 H 0.31 7.97 6.68 -40.82 -0.27 7.70 14 21 H 0.11 2.75 6.44 -52.49 -0.34 2.41 14 22 H 0.09 1.82 8.06 -52.48 -0.42 1.39 14 23 H 0.09 1.94 8.06 -52.49 -0.42 1.51 14 LS Contribution 227.96 15.07 3.44 3.44 Total: -1.00 -27.24 227.96 -7.62 -34.87 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -2.31 Total: 6.21 kcal Atomic # 6 Polarization: -21.16 SS G_CDS: -3.49 Total: -24.65 kcal Atomic # 7 Polarization: -34.01 SS G_CDS: 1.36 Total: -32.65 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.10 Total: 14.85 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.52 Total: -2.06 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -27.24 -7.62 -34.87 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214668115.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.233 kcal (2) G-P(sol) polarization free energy of solvation -27.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds