Wall clock time and date at job start Mon Mar 30 2020 02:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30864 * 1 3 3 Si 1.86802 * 120.00346 * 2 1 4 4 H 1.48503 * 109.46896 * 0.02562 * 3 2 1 5 5 H 1.48491 * 109.46830 * 120.00500 * 3 2 1 6 6 H 1.48502 * 109.46848 * 240.00307 * 3 2 1 7 7 C 1.39977 * 119.99531 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99433 * 154.58287 * 7 2 1 9 9 C 1.40202 * 119.99847 * 334.58431 * 7 2 1 10 10 C 1.40415 * 120.75228 * 334.66820 * 9 7 2 11 11 C 1.38091 * 121.20018 * 179.97438 * 10 9 7 12 12 C 1.37584 * 122.50400 * 0.02562 * 11 10 9 13 13 C 1.40735 * 120.66925 * 0.02562 * 12 11 10 14 14 C 1.38764 * 134.76408 * 180.02562 * 13 12 11 15 15 Cl 1.73598 * 126.16312 * 359.97438 * 14 13 12 16 16 N 1.34306 * 107.67468 * 179.34949 * 14 13 12 17 17 H 0.96995 * 125.05888 * 180.02562 * 16 14 13 18 18 N 1.39964 * 109.87003 * 0.51865 * 16 14 13 19 19 C 1.31222 * 109.16096 * 359.54318 * 18 16 14 20 20 H 0.97002 * 120.00621 * 174.18712 * 1 2 3 21 21 H 1.08001 * 119.40191 * 359.97438 * 10 9 7 22 22 H 1.08005 * 118.75150 * 180.02562 * 11 10 9 23 23 H 1.07998 * 119.66754 * 180.02562 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 1.2777 2.7465 0.0006 5 1 3.0965 1.6962 1.2124 6 1 3.0964 1.6963 -1.2126 7 6 2.0084 -1.2123 -0.0005 8 1 3.0100 -1.2574 -0.4020 9 6 1.4091 -2.3679 0.5201 10 6 0.3952 -2.2774 1.4873 11 6 -0.2018 -3.4094 2.0060 12 6 0.1546 -4.6790 1.6135 13 6 1.1612 -4.8766 0.6499 14 6 1.7386 -5.9887 0.0539 15 17 1.3317 -7.6467 0.3686 16 7 2.6592 -5.5509 -0.8205 17 1 3.2142 -6.1196 -1.3767 18 7 2.7063 -4.1522 -0.8013 19 6 1.8255 -3.7034 0.0617 20 1 -0.4851 -0.8357 -0.0851 21 1 0.0766 -1.3047 1.8320 22 1 -0.9780 -3.2938 2.7480 23 1 -0.3432 -5.5327 2.0491 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214668115.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:49 Heat of formation + Delta-G solvation = 50.302245 kcal Electronic energy + Delta-G solvation = -12327.907448 eV Core-core repulsion = 9974.071011 eV Total energy + Delta-G solvation = -2353.836437 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.025 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.86646 -38.16604 -37.72068 -35.55806 -32.58955 -31.17404 -29.79727 -26.96692 -24.51464 -22.48565 -21.68798 -19.68939 -18.78233 -17.80253 -16.50005 -16.05060 -15.81765 -15.50966 -14.63961 -14.39927 -13.97383 -13.24347 -12.99094 -12.81683 -12.33103 -12.30131 -12.14594 -11.92135 -11.82135 -11.16045 -10.93499 -10.68337 -9.63563 -9.40505 -8.64983 -6.33161 -0.11437 0.44413 1.13128 1.37175 1.53491 1.76081 1.84095 2.14432 2.30196 2.62150 3.39988 3.50454 4.13672 4.31711 4.57851 4.94455 5.07317 5.30282 5.41369 5.64779 5.72770 5.99906 6.08897 6.25803 6.33285 6.45513 6.70019 6.87021 7.86475 Molecular weight = 222.03amu Principal moments of inertia in cm(-1) A = 0.052231 B = 0.008170 C = 0.007251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.946333 B = 3426.252817 C = 3860.500441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.002 3.998 3 Si 1.119 2.881 4 H -0.265 1.265 5 H -0.260 1.260 6 H -0.257 1.257 7 C -0.486 4.486 8 H 0.080 0.920 9 C 0.103 3.897 10 C -0.321 4.321 11 C -0.045 4.045 12 C -0.251 4.251 13 C -0.131 4.131 14 C 0.072 3.928 15 Cl 0.016 6.984 16 N -0.430 5.430 17 H 0.452 0.548 18 N -0.289 5.289 19 C 0.051 3.949 20 H 0.293 0.707 21 H 0.096 0.904 22 H 0.115 0.885 23 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.728 -6.598 -0.181 7.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.218 4.218 3 Si 0.935 3.065 4 H -0.189 1.189 5 H -0.185 1.185 6 H -0.181 1.181 7 C -0.513 4.513 8 H 0.098 0.902 9 C 0.098 3.902 10 C -0.343 4.343 11 C -0.064 4.064 12 C -0.272 4.272 13 C -0.141 4.141 14 C -0.085 4.085 15 Cl 0.044 6.956 16 N -0.143 5.143 17 H 0.299 0.701 18 N -0.118 5.118 19 C -0.106 4.106 20 H 0.106 0.894 21 H 0.114 0.886 22 H 0.133 0.867 23 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.288 -4.827 -0.945 5.916 hybrid contribution -0.331 -2.664 0.179 2.690 sum 2.957 -7.490 -0.765 8.089 Atomic orbital electron populations 1.70519 1.08850 1.34317 1.26402 1.28693 0.95643 1.07379 0.90086 0.82986 0.74860 0.69318 0.79381 1.18914 1.18457 1.18118 1.20824 1.02792 0.94875 1.32825 0.90229 1.18001 0.92974 0.87362 0.91903 1.20372 1.09448 0.97478 1.07051 1.20424 0.96979 0.91931 0.97085 1.19646 1.04712 0.96497 1.06337 1.19221 1.02470 0.89352 1.03070 1.21226 0.99816 0.87116 1.00377 1.98344 1.92115 1.10852 1.94276 1.45996 1.30668 1.05085 1.32517 0.70084 1.77080 1.23841 0.86981 1.23862 1.22594 0.96052 0.95843 0.96160 0.89369 0.88626 0.86728 0.86607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -40.37 12.32 21.84 0.27 -40.11 14 2 C 0.00 0.10 4.94 85.26 0.42 0.52 14 3 Si 1.12 40.81 30.00 68.60 2.06 42.87 14 4 H -0.27 -9.36 7.11 99.48 0.71 -8.65 14 5 H -0.26 -8.99 7.11 99.48 0.71 -8.28 14 6 H -0.26 -8.66 7.11 99.48 0.71 -7.95 14 7 C -0.49 -25.80 9.00 23.17 0.21 -25.59 14 8 H 0.08 4.18 7.96 -2.91 -0.02 4.16 14 9 C 0.10 5.61 5.46 -19.91 -0.11 5.50 14 10 C -0.32 -16.66 7.92 22.77 0.18 -16.48 14 11 C -0.04 -2.07 9.87 22.08 0.22 -1.85 14 12 C -0.25 -11.22 10.09 22.73 0.23 -10.99 14 13 C -0.13 -6.02 6.33 -20.22 -0.13 -6.15 14 14 C 0.07 2.72 7.93 84.44 0.67 3.39 14 15 Cl 0.02 0.47 29.32 -2.72 -0.08 0.39 14 16 N -0.43 -15.75 7.20 -48.70 -0.35 -16.10 14 17 H 0.45 12.15 8.96 -213.41 -1.91 10.24 14 18 N -0.29 -13.50 12.65 -45.02 -0.57 -14.07 14 19 C 0.05 2.62 7.46 43.92 0.33 2.94 14 20 H 0.29 15.93 6.68 -92.71 -0.62 15.31 14 21 H 0.10 5.09 6.44 -2.91 -0.02 5.07 14 22 H 0.11 4.57 8.06 -2.91 -0.02 4.55 14 23 H 0.12 4.51 8.06 -2.91 -0.02 4.49 14 Total: -1.00 -59.63 227.96 2.84 -56.78 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: -0.50 Total: 18.94 kcal Atomic # 6 Polarization: -50.72 SS G_CDS: 2.02 Total: -48.71 kcal Atomic # 7 Polarization: -69.62 SS G_CDS: -0.65 Total: -70.27 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.06 Total: 42.87 kcal Atomic # 17 Polarization: 0.47 SS G_CDS: -0.08 Total: 0.39 kcal Total: -59.63 2.84 -56.78 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214668115.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.083 kcal (2) G-P(sol) polarization free energy of solvation -59.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds