Wall clock time and date at job start Mon Mar 30 2020 02:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31012 * 1 3 3 Si 1.86803 * 119.99920 * 2 1 4 4 H 1.48498 * 109.47073 * 240.00110 * 3 2 1 5 5 H 1.48500 * 109.47075 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47220 * 119.99870 * 3 2 1 7 7 C 1.39670 * 120.00083 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00372 * 162.97244 * 7 2 1 9 9 C 1.40417 * 120.00020 * 342.96644 * 7 2 1 10 10 C 1.46935 * 120.75045 * 336.13271 * 9 7 2 11 11 C 1.34031 * 119.65861 * 179.97438 * 10 9 7 12 12 N 1.37505 * 121.13760 * 0.27587 * 11 10 9 13 13 C 1.36020 * 132.19864 * 179.69759 * 12 11 10 14 14 Cl 1.73605 * 125.26231 * 0.04600 * 13 12 11 15 15 N 1.31232 * 109.46855 * 180.02562 * 13 12 11 16 16 C 1.32990 * 110.05818 * 359.41319 * 15 13 12 17 17 C 1.38266 * 121.08097 * 359.44352 * 12 11 10 18 18 C 1.39356 * 120.74021 * 0.55176 * 17 12 11 19 19 H 0.96998 * 119.99796 * 359.97438 * 1 2 3 20 20 H 1.08001 * 120.16739 * 359.96032 * 10 9 7 21 21 H 1.07998 * 119.42846 * 180.02562 * 11 10 9 22 22 H 1.07996 * 126.26456 * 179.97438 * 16 15 13 23 23 H 1.07997 * 120.55901 * 179.70433 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6178 0.0000 4 1 3.0978 1.6965 -1.2125 5 1 1.2791 2.7465 0.0006 6 1 3.0978 1.6965 1.2125 7 6 2.0085 -1.2096 -0.0005 8 1 3.0530 -1.2300 -0.2744 9 6 1.3526 -2.3991 0.3551 10 6 0.1532 -2.3710 1.2034 11 6 -0.4559 -3.5196 1.5291 12 7 0.0253 -4.7297 1.0875 13 6 -0.3999 -6.0073 1.2800 14 17 -1.7853 -6.4719 2.2174 15 7 0.3988 -6.8341 0.6472 16 6 1.3521 -6.1544 0.0164 17 6 1.1475 -4.8009 0.2829 18 6 1.8289 -3.6449 -0.0932 19 1 -0.4850 0.8400 0.0004 20 1 -0.2355 -1.4296 1.5628 21 1 -1.3375 -3.4946 2.1525 22 1 2.1465 -6.5745 -0.5825 23 1 2.7079 -3.7044 -0.7178 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214668618.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:11 Heat of formation + Delta-G solvation = 61.167879 kcal Electronic energy + Delta-G solvation = -12301.217167 eV Core-core repulsion = 9947.851899 eV Total energy + Delta-G solvation = -2353.365268 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.025 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.24037 -36.43928 -36.02843 -34.01431 -31.72240 -29.55877 -27.96070 -25.08476 -22.18246 -21.25895 -20.61797 -17.76857 -16.91015 -15.62889 -15.11601 -14.83863 -14.24844 -13.65770 -13.50571 -12.63438 -12.33688 -11.74146 -11.53546 -11.46166 -11.25687 -10.86986 -10.64702 -10.49142 -10.07924 -9.85415 -9.29139 -8.98540 -8.15409 -7.32750 -6.61408 -4.70448 2.10968 2.24737 2.40456 2.83660 2.85394 2.90530 3.59152 3.89740 3.93658 4.11174 5.09140 5.43743 5.79350 6.14993 6.29201 6.50742 6.57059 6.70606 6.92486 7.19325 7.45086 7.60971 7.67267 7.92397 8.15956 8.34810 8.43459 8.80513 9.65220 Molecular weight = 222.03amu Principal moments of inertia in cm(-1) A = 0.056302 B = 0.007615 C = 0.006822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.200469 B = 3675.872333 C = 4103.219182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.072 3.928 3 Si 0.922 3.078 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.423 4.423 8 H 0.092 0.908 9 C 0.121 3.879 10 C -0.103 4.103 11 C 0.019 3.981 12 N -0.378 5.378 13 C 0.115 3.885 14 Cl -0.009 7.009 15 N -0.422 5.422 16 C -0.129 4.129 17 C 0.125 3.875 18 C -0.299 4.299 19 H 0.292 0.708 20 H 0.151 0.849 21 H 0.140 0.860 22 H 0.167 0.833 23 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.730 1.229 2.385 2.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.150 4.150 3 Si 0.745 3.255 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.452 4.452 8 H 0.110 0.890 9 C 0.115 3.885 10 C -0.125 4.125 11 C -0.099 4.099 12 N -0.058 5.058 13 C -0.158 4.158 14 Cl 0.018 6.982 15 N -0.140 5.140 16 C -0.281 4.281 17 C 0.014 3.986 18 C -0.322 4.322 19 H 0.103 0.897 20 H 0.168 0.832 21 H 0.158 0.842 22 H 0.184 0.816 23 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.330 0.369 2.563 2.911 hybrid contribution 0.051 1.603 0.102 1.607 sum -1.279 1.972 2.666 3.554 Atomic orbital electron populations 1.69816 1.07871 1.30780 1.31743 1.26150 0.94963 1.02362 0.91477 0.86106 0.80088 0.78726 0.80581 1.18392 1.19900 1.18305 1.19481 0.98463 0.90599 1.36642 0.88954 1.18655 0.89315 0.92719 0.87828 1.22374 0.96736 0.95984 0.97433 1.21228 1.01392 0.83266 1.04048 1.42384 1.21954 1.04743 1.36717 1.22061 1.00122 0.79986 1.13607 1.98286 1.37956 1.91356 1.70636 1.69272 1.03678 1.32614 1.08413 1.22040 1.04605 0.87767 1.13730 1.19554 0.88020 0.96582 0.94457 1.20084 1.07820 0.88904 1.15386 0.89729 0.83166 0.84229 0.81595 0.86171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -17.12 10.88 55.53 0.60 -16.51 14 2 C 0.07 1.54 5.20 -17.37 -0.09 1.45 14 3 Si 0.92 15.98 29.59 -169.99 -5.03 10.95 14 4 H -0.26 -4.50 7.11 56.52 0.40 -4.10 14 5 H -0.27 -4.65 7.11 56.52 0.40 -4.24 14 6 H -0.26 -4.47 7.11 56.52 0.40 -4.07 14 7 C -0.42 -9.76 9.04 -38.23 -0.35 -10.11 14 8 H 0.09 2.02 7.90 -52.49 -0.41 1.61 14 9 C 0.12 2.89 5.72 -104.62 -0.60 2.29 14 10 C -0.10 -2.32 8.80 -37.54 -0.33 -2.65 14 11 C 0.02 0.41 10.83 -16.49 -0.18 0.24 14 12 N -0.38 -8.79 2.98 -58.96 -0.18 -8.96 14 13 C 0.11 2.60 8.60 -88.86 -0.76 1.84 14 14 Cl -0.01 -0.18 29.24 -51.86 -1.52 -1.69 14 15 N -0.42 -9.93 11.18 -10.50 -0.12 -10.04 14 16 C -0.13 -2.94 12.06 -16.60 -0.20 -3.14 14 17 C 0.12 2.98 6.77 -84.09 -0.57 2.41 14 18 C -0.30 -7.09 9.94 -38.23 -0.38 -7.47 14 19 H 0.29 5.77 8.30 -40.82 -0.34 5.43 14 20 H 0.15 3.27 6.26 -52.49 -0.33 2.94 14 21 H 0.14 2.58 8.06 -52.49 -0.42 2.16 14 22 H 0.17 3.27 8.06 -52.49 -0.42 2.84 14 23 H 0.12 2.66 8.06 -52.49 -0.42 2.24 14 LS Contribution 228.77 15.07 3.45 3.45 Total: -1.00 -25.75 228.77 -7.39 -33.14 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -1.15 Total: 4.80 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: -3.46 Total: -15.13 kcal Atomic # 7 Polarization: -35.83 SS G_CDS: 0.31 Total: -35.52 kcal Atomic # 14 Polarization: 15.98 SS G_CDS: -5.03 Total: 10.95 kcal Atomic # 17 Polarization: -0.18 SS G_CDS: -1.52 Total: -1.69 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -25.75 -7.39 -33.14 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214668618.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.311 kcal (2) G-P(sol) polarization free energy of solvation -25.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds