Wall clock time and date at job start Mon Mar 30 2020 03:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32558 * 1 3 3 C 1.50696 * 119.99867 * 2 1 4 4 C 1.47834 * 120.00102 * 180.02562 * 2 1 3 5 5 C 1.39899 * 120.01655 * 114.99467 * 4 2 1 6 6 C 1.38464 * 120.34541 * 179.97438 * 5 4 2 7 7 Cl 1.73596 * 119.81132 * 180.02562 * 6 5 4 8 8 C 1.37856 * 120.37363 * 359.97438 * 6 5 4 9 9 C 1.40743 * 120.02480 * 0.02562 * 8 6 5 10 10 C 1.41421 * 120.17596 * 179.97438 * 9 8 6 11 11 H 1.08000 * 120.00270 * 334.89395 * 10 9 8 12 12 C 1.39928 * 120.00341 * 154.88904 * 10 9 8 13 13 N 1.30831 * 119.99636 * 342.65559 * 12 10 9 14 14 Si 1.86793 * 120.00309 * 162.65874 * 12 10 9 15 15 H 1.48510 * 109.47220 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47488 * 119.99632 * 14 12 10 17 17 H 1.48501 * 109.46960 * 239.99920 * 14 12 10 18 18 C 1.38943 * 120.01526 * 294.98058 * 4 2 1 19 19 H 1.08001 * 119.99792 * 359.97438 * 1 2 3 20 20 H 1.08001 * 119.99682 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47472 * 240.00087 * 3 2 1 22 22 H 1.09004 * 109.47473 * 0.02562 * 3 2 1 23 23 H 1.09010 * 109.47043 * 120.00010 * 3 2 1 24 24 H 1.07995 * 119.82436 * 0.02562 * 5 4 2 25 25 H 1.08000 * 119.98625 * 179.73920 * 8 6 5 26 26 H 0.97003 * 119.99777 * 179.97438 * 13 12 10 27 27 H 1.07997 * 120.18089 * 359.97438 * 18 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3256 0.0000 0.0000 3 6 2.0790 1.3051 0.0000 4 6 2.0648 -1.2803 -0.0006 5 6 2.8580 -1.6299 -1.0986 6 6 3.5536 -2.8271 -1.1062 7 17 4.5343 -3.2468 -2.4757 8 6 3.4727 -3.6871 -0.0318 9 6 2.6793 -3.3510 1.0811 10 6 2.5936 -4.2311 2.1848 11 1 2.7717 -5.2875 2.0482 12 6 2.2779 -3.7332 3.4538 13 7 2.3938 -2.4539 3.7020 14 14 1.6914 -4.8951 4.7937 15 1 1.6462 -6.2811 4.2621 16 1 2.6277 -4.8364 5.9448 17 1 0.3334 -4.4917 5.2390 18 6 1.9723 -2.1367 1.0896 19 1 -0.5400 0.9353 0.0004 20 1 -0.5400 -0.9353 -0.0004 21 1 2.7057 1.3629 -0.8900 22 1 1.3707 2.1336 0.0005 23 1 2.7057 1.3628 0.8901 24 1 2.9287 -0.9622 -1.9445 25 1 4.0146 -4.6212 -0.0460 26 1 2.1746 -2.1087 4.5816 27 1 1.3615 -1.8699 1.9393 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214668832.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:48 Heat of formation + Delta-G solvation = 8.191600 kcal Electronic energy + Delta-G solvation = -12431.560574 eV Core-core repulsion = 10179.438425 eV Total energy + Delta-G solvation = -2252.122149 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.051 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -37.96363 -35.62701 -34.72753 -33.27030 -29.70482 -28.71626 -26.63141 -25.39626 -21.76362 -21.00079 -18.39214 -16.90058 -15.48821 -14.90293 -14.38713 -14.02545 -13.54861 -13.17667 -12.94536 -12.52982 -12.13479 -11.61797 -11.38280 -11.27433 -11.09221 -10.93961 -10.65747 -10.34040 -10.11906 -9.93710 -9.56911 -9.25010 -8.54230 -7.53754 -7.33645 -6.87962 -4.50767 2.41068 2.65904 2.92124 3.02537 3.07880 3.10079 3.25139 3.85887 4.43746 5.40566 5.46639 5.70676 5.98075 6.07881 6.28547 6.35154 6.37307 6.60710 6.82861 6.94339 7.05135 7.14842 7.28121 7.39937 7.58988 7.78745 7.85675 8.03961 8.43788 8.72019 8.74851 10.06478 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.021593 B = 0.010629 C = 0.007549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.379019 B = 2633.693467 C = 3708.442977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.060 4.060 3 C -0.112 4.112 4 C -0.040 4.040 5 C -0.220 4.220 6 C 0.007 3.993 7 Cl -0.126 7.126 8 C -0.218 4.218 9 C 0.116 3.884 10 C -0.458 4.458 11 H 0.082 0.918 12 C 0.076 3.924 13 N -0.789 5.789 14 Si 0.910 3.090 15 H -0.259 1.259 16 H -0.273 1.273 17 H -0.271 1.271 18 C -0.140 4.140 19 H 0.092 0.908 20 H 0.096 0.904 21 H 0.063 0.937 22 H 0.055 0.945 23 H 0.067 0.933 24 H 0.099 0.901 25 H 0.104 0.896 26 H 0.282 0.718 27 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.517 2.655 -2.676 4.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.060 4.060 3 C -0.169 4.169 4 C -0.041 4.041 5 C -0.240 4.240 6 C -0.019 4.019 7 Cl -0.098 7.098 8 C -0.238 4.238 9 C 0.113 3.887 10 C -0.487 4.487 11 H 0.100 0.900 12 C -0.143 4.143 13 N -0.414 5.414 14 Si 0.734 3.266 15 H -0.183 1.183 16 H -0.199 1.199 17 H -0.196 1.196 18 C -0.159 4.159 19 H 0.110 0.890 20 H 0.114 0.886 21 H 0.082 0.918 22 H 0.074 0.926 23 H 0.086 0.914 24 H 0.117 0.883 25 H 0.122 0.878 26 H 0.093 0.907 27 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.445 2.791 -2.595 4.076 hybrid contribution -0.086 -0.474 0.556 0.735 sum -1.531 2.317 -2.039 3.446 Atomic orbital electron populations 1.23923 0.94747 1.01032 1.04831 1.20563 0.94359 0.93732 0.97350 1.20822 0.99950 0.93839 1.02276 1.18517 0.97636 0.93310 0.94608 1.20182 1.06293 0.97623 0.99899 1.20450 0.96745 0.96738 0.87986 1.98257 1.71277 1.93806 1.46442 1.20938 1.06238 1.00976 0.95646 1.17444 0.88087 0.92018 0.91108 1.19598 1.41703 0.95670 0.91708 0.90001 1.25929 0.92669 0.95583 1.00099 1.69818 1.34012 1.14170 1.23351 0.86223 0.79119 0.81355 0.79881 1.18265 1.19868 1.19585 1.21562 1.01839 0.95352 0.97161 0.88999 0.88597 0.91820 0.92616 0.91414 0.88256 0.87825 0.90664 0.85641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.65 13.95 28.82 0.40 -3.25 15 2 C -0.06 -1.16 5.43 -102.61 -0.56 -1.71 15 3 C -0.11 -1.82 10.09 36.00 0.36 -1.45 15 4 C -0.04 -0.91 5.31 -105.09 -0.56 -1.47 15 5 C -0.22 -4.92 9.55 -38.88 -0.37 -5.29 15 6 C 0.01 0.16 6.30 -39.64 -0.25 -0.09 15 7 Cl -0.13 -2.47 28.94 -51.86 -1.50 -3.97 15 8 C -0.22 -5.32 9.55 -38.78 -0.37 -5.69 15 9 C 0.12 3.02 5.56 -106.88 -0.59 2.43 15 10 C -0.46 -11.77 9.05 -37.74 -0.34 -12.11 15 11 H 0.08 2.03 7.90 -52.49 -0.41 1.61 15 12 C 0.08 1.84 5.14 -17.35 -0.09 1.75 15 13 N -0.79 -19.71 10.97 55.55 0.61 -19.11 15 14 Si 0.91 18.09 29.59 -169.99 -5.03 13.06 15 15 H -0.26 -5.11 7.11 56.52 0.40 -4.71 15 16 H -0.27 -5.35 7.11 56.52 0.40 -4.95 15 17 H -0.27 -5.29 7.11 56.52 0.40 -4.89 15 18 C -0.14 -3.52 8.34 -38.46 -0.32 -3.84 15 19 H 0.09 1.34 7.86 -52.49 -0.41 0.93 15 20 H 0.10 1.73 8.05 -52.49 -0.42 1.31 15 21 H 0.06 0.98 8.14 -51.93 -0.42 0.55 15 22 H 0.05 0.75 7.80 -51.93 -0.41 0.35 15 23 H 0.07 1.13 8.14 -51.92 -0.42 0.70 15 24 H 0.10 2.05 8.06 -52.49 -0.42 1.62 15 25 H 0.10 2.42 8.06 -52.49 -0.42 2.00 15 26 H 0.28 6.40 8.30 -40.82 -0.34 6.06 15 27 H 0.13 3.27 6.18 -52.49 -0.32 2.95 15 LS Contribution 257.61 15.07 3.88 3.88 Total: -1.00 -25.80 257.61 -7.53 -33.34 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -2.80 Total: 3.53 kcal Atomic # 6 Polarization: -28.04 SS G_CDS: -2.69 Total: -30.73 kcal Atomic # 7 Polarization: -19.71 SS G_CDS: 0.61 Total: -19.11 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.06 kcal Atomic # 17 Polarization: -2.47 SS G_CDS: -1.50 Total: -3.97 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -25.80 -7.53 -33.34 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214668832.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.527 kcal (2) G-P(sol) polarization free energy of solvation -25.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds