Wall clock time and date at job start Mon Mar 30 2020 03:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32558 * 1 3 3 C 1.50696 * 119.99867 * 2 1 4 4 C 1.47834 * 120.00102 * 180.02562 * 2 1 3 5 5 C 1.39899 * 120.01655 * 114.99467 * 4 2 1 6 6 C 1.38464 * 120.34541 * 179.97438 * 5 4 2 7 7 Cl 1.73596 * 119.81132 * 180.02562 * 6 5 4 8 8 C 1.37856 * 120.37363 * 359.97438 * 6 5 4 9 9 C 1.40743 * 120.02480 * 0.02562 * 8 6 5 10 10 C 1.41421 * 120.17596 * 179.97438 * 9 8 6 11 11 H 1.08000 * 120.00270 * 334.89395 * 10 9 8 12 12 C 1.39928 * 120.00341 * 154.88904 * 10 9 8 13 13 N 1.30831 * 119.99636 * 342.65559 * 12 10 9 14 14 Si 1.86793 * 120.00309 * 162.65874 * 12 10 9 15 15 H 1.48510 * 109.47220 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47488 * 119.99632 * 14 12 10 17 17 H 1.48501 * 109.46960 * 239.99920 * 14 12 10 18 18 C 1.38943 * 120.01526 * 294.98058 * 4 2 1 19 19 H 1.08001 * 119.99792 * 359.97438 * 1 2 3 20 20 H 1.08001 * 119.99682 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47472 * 240.00087 * 3 2 1 22 22 H 1.09004 * 109.47473 * 0.02562 * 3 2 1 23 23 H 1.09010 * 109.47043 * 120.00010 * 3 2 1 24 24 H 1.07995 * 119.82436 * 0.02562 * 5 4 2 25 25 H 1.08000 * 119.98625 * 179.73920 * 8 6 5 26 26 H 0.97003 * 119.99777 * 179.97438 * 13 12 10 27 27 H 1.07997 * 120.18089 * 359.97438 * 18 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3256 0.0000 0.0000 3 6 2.0790 1.3051 0.0000 4 6 2.0648 -1.2803 -0.0006 5 6 2.8580 -1.6299 -1.0986 6 6 3.5536 -2.8271 -1.1062 7 17 4.5343 -3.2468 -2.4757 8 6 3.4727 -3.6871 -0.0318 9 6 2.6793 -3.3510 1.0811 10 6 2.5936 -4.2311 2.1848 11 1 2.7717 -5.2875 2.0482 12 6 2.2779 -3.7332 3.4538 13 7 2.3938 -2.4539 3.7020 14 14 1.6914 -4.8951 4.7937 15 1 1.6462 -6.2811 4.2621 16 1 2.6277 -4.8364 5.9448 17 1 0.3334 -4.4917 5.2390 18 6 1.9723 -2.1367 1.0896 19 1 -0.5400 0.9353 0.0004 20 1 -0.5400 -0.9353 -0.0004 21 1 2.7057 1.3629 -0.8900 22 1 1.3707 2.1336 0.0005 23 1 2.7057 1.3628 0.8901 24 1 2.9287 -0.9622 -1.9445 25 1 4.0146 -4.6212 -0.0460 26 1 2.1746 -2.1087 4.5816 27 1 1.3615 -1.8699 1.9393 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214668832.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:48 Heat of formation + Delta-G solvation = -3.187780 kcal Electronic energy + Delta-G solvation = -12432.054021 eV Core-core repulsion = 10179.438425 eV Total energy + Delta-G solvation = -2252.615596 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.051 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.73977 -37.30767 -36.36863 -35.01139 -31.54059 -30.45404 -27.99417 -27.24066 -23.49273 -22.84346 -20.07109 -18.65174 -17.25958 -16.62480 -16.07368 -15.77855 -15.16593 -14.67926 -14.58850 -13.88575 -13.83076 -13.33425 -13.01104 -12.87492 -12.74143 -12.43509 -12.26515 -11.99593 -11.89255 -11.68906 -11.28678 -11.03797 -10.04480 -9.37316 -9.12623 -8.69665 -6.44032 0.68224 0.83894 1.32790 1.39380 1.44516 1.53612 1.59203 2.19532 2.61747 3.55126 3.98590 4.30551 4.50733 4.69846 4.78403 4.83060 4.93791 4.99502 5.12632 5.13702 5.23020 5.39293 5.66353 5.75411 5.90891 5.96486 6.04311 6.19442 6.55150 6.83563 6.85510 8.27270 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.021593 B = 0.010629 C = 0.007549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.379019 B = 2633.693467 C = 3708.442977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.091 4.091 3 C -0.106 4.106 4 C -0.037 4.037 5 C -0.222 4.222 6 C 0.003 3.997 7 Cl -0.096 7.096 8 C -0.238 4.238 9 C 0.090 3.910 10 C -0.493 4.493 11 H 0.079 0.921 12 C 0.038 3.962 13 N -0.818 5.818 14 Si 0.983 3.017 15 H -0.258 1.258 16 H -0.265 1.265 17 H -0.263 1.263 18 C -0.165 4.165 19 H 0.129 0.871 20 H 0.083 0.917 21 H 0.070 0.930 22 H 0.086 0.914 23 H 0.056 0.944 24 H 0.120 0.880 25 H 0.104 0.896 26 H 0.291 0.709 27 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.114 3.491 -2.904 5.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.091 4.091 3 C -0.162 4.162 4 C -0.038 4.038 5 C -0.242 4.242 6 C -0.023 4.023 7 Cl -0.068 7.068 8 C -0.258 4.258 9 C 0.087 3.913 10 C -0.522 4.522 11 H 0.097 0.903 12 C -0.178 4.178 13 N -0.443 5.443 14 Si 0.804 3.196 15 H -0.182 1.182 16 H -0.189 1.189 17 H -0.187 1.187 18 C -0.184 4.184 19 H 0.147 0.853 20 H 0.101 0.899 21 H 0.089 0.911 22 H 0.105 0.895 23 H 0.074 0.926 24 H 0.138 0.862 25 H 0.122 0.878 26 H 0.102 0.898 27 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.031 3.634 -2.845 5.043 hybrid contribution 0.112 -0.695 0.499 0.863 sum -1.920 2.939 -2.345 4.222 Atomic orbital electron populations 1.24159 0.94218 1.02221 1.02018 1.20748 0.95122 0.93453 0.99777 1.20807 1.00342 0.93034 1.02043 1.18918 0.96968 0.94313 0.93593 1.20497 1.05678 0.97650 1.00355 1.20585 0.96714 0.96503 0.88533 1.98257 1.70323 1.93656 1.44517 1.21027 1.06862 1.01615 0.96277 1.17797 0.88747 0.92797 0.91939 1.19843 1.43811 0.95677 0.92891 0.90307 1.26753 0.92011 0.97168 1.01864 1.69862 1.34289 1.15761 1.24404 0.85137 0.78820 0.78916 0.76763 1.18176 1.18946 1.18717 1.21492 1.02868 0.96209 0.97841 0.85319 0.89861 0.91119 0.89492 0.92560 0.86161 0.87804 0.89839 0.87252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.22 13.95 66.67 0.93 -5.29 15 2 C -0.09 -3.37 5.43 -18.47 -0.10 -3.47 15 3 C -0.11 -3.17 10.09 71.23 0.72 -2.45 15 4 C -0.04 -1.70 5.31 -20.17 -0.11 -1.80 15 5 C -0.22 -9.76 9.55 22.73 0.22 -9.54 15 6 C 0.00 0.13 6.30 22.23 0.14 0.27 15 7 Cl -0.10 -3.63 28.94 -2.72 -0.08 -3.71 15 8 C -0.24 -11.87 9.55 22.79 0.22 -11.65 15 9 C 0.09 4.83 5.56 -21.33 -0.12 4.71 15 10 C -0.49 -26.22 9.05 23.46 0.21 -26.01 15 11 H 0.08 4.06 7.90 -2.91 -0.02 4.03 15 12 C 0.04 1.87 5.14 85.25 0.44 2.31 15 13 N -0.82 -41.67 10.97 21.82 0.24 -41.43 15 14 Si 0.98 37.25 29.59 68.60 2.03 39.28 15 15 H -0.26 -9.64 7.11 99.48 0.71 -8.93 15 16 H -0.26 -9.60 7.11 99.48 0.71 -8.89 15 17 H -0.26 -9.53 7.11 99.48 0.71 -8.82 15 18 C -0.16 -8.51 8.34 22.99 0.19 -8.32 15 19 H 0.13 3.25 7.86 -2.91 -0.02 3.23 15 20 H 0.08 2.92 8.05 -2.91 -0.02 2.89 15 21 H 0.07 1.98 8.14 -2.39 -0.02 1.96 15 22 H 0.09 2.03 7.80 -2.39 -0.02 2.01 15 23 H 0.06 1.79 8.14 -2.38 -0.02 1.77 15 24 H 0.12 4.71 8.06 -2.91 -0.02 4.69 15 25 H 0.10 5.01 8.06 -2.91 -0.02 4.98 15 26 H 0.29 13.29 8.30 -92.71 -0.77 12.53 15 27 H 0.11 5.91 6.18 -2.91 -0.02 5.89 15 Total: -1.00 -55.84 257.61 6.09 -49.75 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: 1.16 Total: 17.36 kcal Atomic # 6 Polarization: -63.98 SS G_CDS: 2.74 Total: -61.24 kcal Atomic # 7 Polarization: -41.67 SS G_CDS: 0.24 Total: -41.43 kcal Atomic # 14 Polarization: 37.25 SS G_CDS: 2.03 Total: 39.28 kcal Atomic # 17 Polarization: -3.63 SS G_CDS: -0.08 Total: -3.71 kcal Total: -55.84 6.09 -49.75 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214668832.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.561 kcal (2) G-P(sol) polarization free energy of solvation -55.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds