Wall clock time and date at job start Mon Mar 30 2020 03:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86796 * 120.00241 * 2 1 4 4 H 1.48501 * 109.46834 * 239.99709 * 3 2 1 5 5 H 1.48503 * 109.46845 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47526 * 119.99538 * 3 2 1 7 7 C 1.39946 * 119.99819 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00176 * 161.63056 * 7 2 1 9 9 C 1.41400 * 120.00166 * 341.63168 * 7 2 1 10 10 C 1.40616 * 120.28368 * 335.70894 * 9 7 2 11 11 C 1.37868 * 120.03764 * 179.76538 * 10 9 7 12 12 C 1.38702 * 120.11467 * 0.51286 * 11 10 9 13 13 C 1.39040 * 120.23164 * 359.74125 * 12 11 10 14 14 Cl 1.73607 * 119.74189 * 179.97438 * 13 12 11 15 15 C 1.37615 * 120.52050 * 359.97438 * 13 12 11 16 16 C 1.51449 * 109.63749 * 179.73985 * 12 11 10 17 17 C 1.54322 * 105.19989 * 342.73780 * 16 12 11 18 18 C 1.51415 * 130.18841 * 180.18592 * 11 10 9 19 19 H 0.97006 * 120.00037 * 0.02562 * 1 2 3 20 20 H 1.07996 * 119.98253 * 0.02785 * 10 9 7 21 21 H 1.07999 * 120.16975 * 180.02562 * 15 13 12 22 22 H 1.09002 * 110.29954 * 101.66762 * 16 12 11 23 23 H 1.09001 * 110.30300 * 223.80732 * 16 12 11 24 24 H 1.09005 * 110.81031 * 268.25936 * 17 16 12 25 25 H 1.09002 * 110.97635 * 144.82350 * 17 16 12 26 26 H 1.09000 * 110.30323 * 316.48430 * 18 11 10 27 27 H 1.09007 * 110.30041 * 78.53457 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6962 -1.2125 5 1 1.2772 2.7464 -0.0006 6 1 3.0959 1.6964 1.2125 7 6 2.0079 -1.2120 0.0005 8 1 3.0466 -1.2360 -0.2942 9 6 1.3549 -2.4052 0.3870 10 6 0.2297 -2.3571 1.2289 11 6 -0.4060 -3.5233 1.5986 12 6 0.0687 -4.7469 1.1500 13 6 1.1838 -4.8042 0.3215 14 17 1.7675 -6.3426 -0.2320 15 6 1.8285 -3.6509 -0.0633 16 6 -0.7967 -5.8613 1.7004 17 6 -1.5726 -5.2287 2.8748 18 6 -1.6195 -3.7380 2.4783 19 1 -0.4850 0.8401 -0.0004 20 1 -0.1393 -1.4058 1.5828 21 1 2.6940 -3.7019 -0.7073 22 1 -1.4893 -6.2146 0.9364 23 1 -0.1747 -6.6824 2.0568 24 1 -1.0331 -5.3631 3.8125 25 1 -2.5785 -5.6424 2.9460 26 1 -1.5593 -3.1084 3.3660 27 1 -2.5322 -3.5215 1.9230 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214669059.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:55 Heat of formation + Delta-G solvation = -11.529630 kcal Electronic energy + Delta-G solvation = -12622.353132 eV Core-core repulsion = 10369.375806 eV Total energy + Delta-G solvation = -2252.977325 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.051 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.68827 -35.59408 -35.19806 -32.94674 -29.72193 -28.68745 -26.61405 -24.61806 -21.45424 -19.86525 -19.71746 -17.14512 -15.53708 -14.96413 -14.60650 -13.93818 -13.85612 -12.88303 -12.32813 -12.14104 -12.05717 -11.70295 -11.32332 -11.14288 -10.89067 -10.72117 -10.54320 -10.50974 -10.17204 -9.85301 -9.71965 -9.60093 -9.09289 -7.38892 -7.30038 -6.86134 -4.46283 2.63462 2.74952 3.02220 3.03979 3.11734 3.27026 3.86601 4.44317 5.30352 5.43739 5.46925 5.57053 6.05727 6.13531 6.34984 6.39330 6.46783 6.51117 6.73696 6.78865 6.94505 7.06295 7.14111 7.36209 7.58196 7.85104 7.93371 8.07754 8.46452 8.74862 8.78648 10.07636 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.032072 B = 0.009460 C = 0.007511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.828064 B = 2959.249967 C = 3726.790338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.077 3.923 3 Si 0.911 3.089 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.458 4.458 8 H 0.081 0.919 9 C 0.121 3.879 10 C -0.149 4.149 11 C -0.072 4.072 12 C -0.219 4.219 13 C 0.023 3.977 14 Cl -0.130 7.130 15 C -0.220 4.220 16 C -0.055 4.055 17 C -0.118 4.118 18 C -0.074 4.074 19 H 0.283 0.717 20 H 0.121 0.879 21 H 0.105 0.895 22 H 0.056 0.944 23 H 0.055 0.945 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.497 -3.638 2.960 4.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.142 4.142 3 Si 0.735 3.265 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.487 4.487 8 H 0.099 0.901 9 C 0.118 3.882 10 C -0.168 4.168 11 C -0.072 4.072 12 C -0.221 4.221 13 C -0.003 4.003 14 Cl -0.101 7.101 15 C -0.240 4.240 16 C -0.092 4.092 17 C -0.156 4.156 18 C -0.111 4.111 19 H 0.094 0.906 20 H 0.139 0.861 21 H 0.123 0.877 22 H 0.075 0.925 23 H 0.074 0.926 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.660 -3.608 2.892 4.913 hybrid contribution 0.417 0.670 -0.226 0.821 sum -1.243 -2.938 2.666 4.157 Atomic orbital electron populations 1.69814 1.07656 1.29618 1.34201 1.25929 0.94745 1.01459 0.92069 0.86317 0.80147 0.79912 0.80120 1.18886 1.20254 1.18694 1.19523 0.98436 0.91001 1.39739 0.90083 1.17358 0.90944 0.91353 0.88562 1.20901 0.98903 0.96249 1.00770 1.20113 0.95804 0.93147 0.98158 1.19588 0.99658 0.95251 1.07572 1.20177 0.96367 0.83813 0.99895 1.98249 1.88956 1.33474 1.89455 1.20792 1.04567 0.90919 1.07771 1.20632 0.96408 0.96080 0.96083 1.22220 0.99368 0.95776 0.98220 1.20907 0.96447 0.95736 0.98015 0.90592 0.86108 0.87662 0.92502 0.92647 0.91857 0.91921 0.92020 0.91428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.79 10.98 55.55 0.61 -19.18 15 2 C 0.08 1.87 5.13 -17.34 -0.09 1.78 15 3 Si 0.91 18.13 29.60 -169.99 -5.03 13.10 15 4 H -0.26 -5.21 7.11 56.52 0.40 -4.81 15 5 H -0.28 -5.37 7.11 56.52 0.40 -4.97 15 6 H -0.26 -5.19 7.11 56.52 0.40 -4.79 15 7 C -0.46 -11.86 9.05 -37.74 -0.34 -12.21 15 8 H 0.08 2.01 7.91 -52.49 -0.42 1.60 15 9 C 0.12 3.17 5.57 -106.88 -0.60 2.57 15 10 C -0.15 -3.79 8.70 -38.82 -0.34 -4.13 15 11 C -0.07 -1.64 6.12 -104.23 -0.64 -2.28 15 12 C -0.22 -4.89 6.08 -103.79 -0.63 -5.52 15 13 C 0.02 0.54 6.31 -39.51 -0.25 0.29 15 14 Cl -0.13 -2.58 28.68 -51.86 -1.49 -4.06 15 15 C -0.22 -5.45 9.56 -38.89 -0.37 -5.82 15 16 C -0.05 -1.00 6.45 -26.82 -0.17 -1.18 15 17 C -0.12 -1.90 7.07 -25.35 -0.18 -2.08 15 18 C -0.07 -1.36 6.77 -26.84 -0.18 -1.54 15 19 H 0.28 6.46 8.30 -40.82 -0.34 6.12 15 20 H 0.12 3.15 6.16 -52.49 -0.32 2.83 15 21 H 0.11 2.49 8.06 -52.49 -0.42 2.07 15 22 H 0.06 1.00 8.14 -51.93 -0.42 0.58 15 23 H 0.05 0.96 8.14 -51.93 -0.42 0.54 15 24 H 0.06 0.96 8.14 -51.93 -0.42 0.53 15 25 H 0.06 0.85 8.14 -51.93 -0.42 0.42 15 26 H 0.06 1.06 8.14 -51.93 -0.42 0.64 15 27 H 0.07 1.20 8.14 -51.93 -0.42 0.77 15 LS Contribution 246.66 15.07 3.72 3.72 Total: -1.00 -26.19 246.66 -8.81 -35.00 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -2.83 Total: 1.53 kcal Atomic # 6 Polarization: -26.32 SS G_CDS: -3.79 Total: -30.10 kcal Atomic # 7 Polarization: -19.79 SS G_CDS: 0.61 Total: -19.18 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.03 Total: 13.10 kcal Atomic # 17 Polarization: -2.58 SS G_CDS: -1.49 Total: -4.06 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -26.19 -8.81 -35.00 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214669059.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.470 kcal (2) G-P(sol) polarization free energy of solvation -26.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds