Wall clock time and date at job start Mon Mar 30 2020 02:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30685 * 1 3 3 Si 1.86795 * 120.00388 * 2 1 4 4 H 1.48495 * 109.47726 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46807 * 299.99800 * 3 2 1 6 6 H 1.48503 * 109.47063 * 59.99309 * 3 2 1 7 7 C 1.40361 * 119.99819 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99653 * 179.97438 * 7 2 1 9 9 C 1.39040 * 120.00202 * 0.02562 * 7 2 1 10 10 N 1.37418 * 127.45299 * 0.02562 * 9 7 2 11 11 H 0.97002 * 124.15056 * 0.25122 * 10 9 7 12 12 N 1.28274 * 111.70313 * 179.97438 * 10 9 7 13 13 C 1.32299 * 112.89264 * 0.02562 * 12 10 9 14 14 C 1.40822 * 135.25234 * 180.02562 * 13 12 10 15 15 C 1.36341 * 119.51574 * 179.97438 * 14 13 12 16 16 Cl 1.73599 * 119.11818 * 179.97438 * 15 14 13 17 17 C 1.39165 * 121.76542 * 0.02562 * 15 14 13 18 18 C 1.36795 * 121.40672 * 359.97438 * 17 15 14 19 19 C 1.38975 * 119.49387 * 359.97438 * 18 17 15 20 20 H 0.96999 * 120.00145 * 0.02562 * 1 2 3 21 21 H 1.08005 * 120.24460 * 359.93979 * 14 13 12 22 22 H 1.07999 * 119.29938 * 179.97438 * 17 15 14 23 23 H 1.07995 * 120.25702 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6176 0.0000 4 1 3.7009 1.3463 0.0006 5 1 1.8822 2.3963 -1.2126 6 1 1.8821 2.3964 1.2124 7 6 2.0086 -1.2156 0.0005 8 1 3.0886 -1.2156 0.0001 9 6 1.3134 -2.4197 0.0005 10 7 -0.0491 -2.5980 -0.0004 11 1 -0.6932 -1.8726 -0.0048 12 7 -0.3649 -3.8412 -0.0007 13 6 0.6897 -4.6401 0.0007 14 6 0.8884 -6.0342 0.0006 15 6 2.1577 -6.5318 0.0017 16 17 2.3907 -8.2521 0.0023 17 6 3.2716 -5.6976 0.0035 18 6 3.1424 -4.3358 0.0037 19 6 1.8735 -3.7689 0.0015 20 1 -0.4850 0.8400 -0.0004 21 1 0.0414 -6.7044 0.0002 22 1 4.2592 -6.1347 0.0048 23 1 4.0196 -3.7059 0.0055 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219762667.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:01 Heat of formation + Delta-G solvation = 49.559968 kcal Electronic energy + Delta-G solvation = -12233.883177 eV Core-core repulsion = 9880.014552 eV Total energy + Delta-G solvation = -2353.868625 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.025 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.23351 -36.76267 -35.23903 -34.32193 -30.81954 -29.15365 -28.64975 -25.50728 -22.82638 -20.86148 -19.84123 -17.95686 -16.57082 -15.61028 -15.20583 -14.55498 -13.79943 -13.44646 -13.14467 -12.79391 -12.16441 -12.11965 -11.68947 -11.62210 -11.00691 -10.81302 -10.37991 -10.19775 -10.17304 -10.03772 -8.83304 -8.67318 -7.56879 -7.41739 -7.02480 -4.76203 1.92891 2.54923 2.76683 2.84683 2.88588 2.93482 3.48437 3.65039 4.64797 4.76948 5.02383 5.60366 5.95001 6.25612 6.31913 6.46258 6.53180 6.67951 7.14465 7.28284 7.37116 7.47858 7.75529 7.89130 8.12117 8.15259 8.97120 9.48139 9.90812 Molecular weight = 222.03amu Principal moments of inertia in cm(-1) A = 0.063025 B = 0.007155 C = 0.006440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.163812 B = 3912.676411 C = 4346.998163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.065 3.935 3 Si 0.945 3.055 4 H -0.253 1.253 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.401 4.401 8 H 0.108 0.892 9 C 0.238 3.762 10 N -0.402 5.402 11 H 0.446 0.554 12 N -0.399 5.399 13 C 0.103 3.897 14 C -0.137 4.137 15 C 0.020 3.980 16 Cl -0.113 7.113 17 C -0.246 4.246 18 C 0.016 3.984 19 C -0.276 4.276 20 H 0.301 0.699 21 H 0.113 0.887 22 H 0.109 0.891 23 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.758 -0.304 -0.006 3.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.155 4.155 3 Si 0.768 3.232 4 H -0.176 1.176 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.437 4.437 8 H 0.126 0.874 9 C 0.110 3.890 10 N -0.119 5.119 11 H 0.300 0.700 12 N -0.229 5.229 13 C -0.050 4.050 14 C -0.159 4.159 15 C -0.010 4.010 16 Cl -0.084 7.084 17 C -0.267 4.267 18 C -0.004 4.004 19 C -0.285 4.285 20 H 0.114 0.886 21 H 0.131 0.869 22 H 0.127 0.873 23 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.276 -0.357 -0.004 2.304 hybrid contribution 0.754 0.941 -0.002 1.206 sum 3.030 0.584 -0.006 3.085 Atomic orbital electron populations 1.68673 1.08344 1.31795 1.35449 1.26324 0.95033 1.03120 0.91006 0.85602 0.80528 0.77964 0.79098 1.17640 1.19199 1.19202 1.19008 0.96079 0.87741 1.40887 0.87423 1.19906 0.83930 0.92332 0.92845 1.44243 1.06214 1.04875 1.56541 0.70007 1.72733 1.25496 0.90613 1.34040 1.19959 0.90085 0.93007 1.01945 1.19186 0.94576 0.91469 1.10694 1.19941 0.94575 0.81553 1.04897 1.98279 1.97521 1.15302 1.97340 1.19763 0.96112 0.92583 1.18281 1.19606 0.94631 0.93111 0.93061 1.20376 0.94245 0.91816 1.22106 0.88646 0.86858 0.87333 0.87251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -17.63 10.74 55.57 0.60 -17.03 14 2 C 0.06 1.37 5.50 -17.24 -0.09 1.28 14 3 Si 0.95 15.76 29.56 -169.99 -5.03 10.74 14 4 H -0.25 -4.16 7.11 56.52 0.40 -3.75 14 5 H -0.27 -4.41 7.11 56.52 0.40 -4.01 14 6 H -0.27 -4.41 7.11 56.52 0.40 -4.01 14 7 C -0.40 -9.28 9.37 -38.49 -0.36 -9.64 14 8 H 0.11 2.30 7.85 -52.49 -0.41 1.89 14 9 C 0.24 6.03 6.97 -81.92 -0.57 5.46 14 10 N -0.40 -10.27 6.55 33.50 0.22 -10.05 14 11 H 0.45 10.91 6.25 -190.55 -1.19 9.72 14 12 N -0.40 -10.49 12.07 33.19 0.40 -10.09 14 13 C 0.10 2.62 7.52 -83.15 -0.62 2.00 14 14 C -0.14 -3.08 9.82 -39.29 -0.39 -3.47 14 15 C 0.02 0.42 6.26 -39.92 -0.25 0.17 14 16 Cl -0.11 -1.97 28.88 -51.86 -1.50 -3.47 14 17 C -0.25 -5.00 9.69 -39.76 -0.39 -5.39 14 18 C 0.02 0.34 10.05 -39.83 -0.40 -0.06 14 19 C -0.28 -6.87 6.63 -102.94 -0.68 -7.55 14 20 H 0.30 5.77 8.29 -40.82 -0.34 5.43 14 21 H 0.11 2.37 8.06 -52.48 -0.42 1.95 14 22 H 0.11 1.94 8.06 -52.49 -0.42 1.51 14 23 H 0.11 2.07 8.06 -52.49 -0.42 1.65 14 LS Contribution 227.50 15.07 3.43 3.43 Total: -1.00 -25.67 227.50 -7.64 -33.30 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -2.01 Total: 10.38 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: -3.75 Total: -17.21 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 1.22 Total: -37.18 kcal Atomic # 14 Polarization: 15.76 SS G_CDS: -5.03 Total: 10.74 kcal Atomic # 17 Polarization: -1.97 SS G_CDS: -1.50 Total: -3.47 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -25.67 -7.64 -33.30 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219762667.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.864 kcal (2) G-P(sol) polarization free energy of solvation -25.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds