Wall clock time and date at job start Mon Mar 30 2020 03:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00034 * 2 1 4 4 H 1.48497 * 109.47298 * 264.81835 * 3 2 1 5 5 H 1.48500 * 109.47108 * 24.82246 * 3 2 1 6 6 H 1.48495 * 109.47128 * 144.81723 * 3 2 1 7 7 C 1.37873 * 119.99805 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00142 * 2.39619 * 7 2 1 9 9 C 1.50699 * 119.99961 * 182.11779 * 7 2 1 10 10 H 1.09006 * 109.68888 * 336.24247 * 9 7 2 11 11 C 1.53224 * 109.69535 * 215.69933 * 9 7 2 12 12 C 1.53001 * 110.22782 * 175.21156 * 11 9 7 13 13 C 1.51412 * 109.35432 * 52.82476 * 12 11 9 14 14 S 1.70299 * 126.19407 * 159.40712 * 13 12 11 15 15 C 1.75414 * 92.71833 * 180.02562 * 14 13 12 16 16 C 1.32529 * 110.77231 * 359.97438 * 15 14 13 17 17 C 1.38039 * 123.35201 * 339.36463 * 13 12 11 18 18 C 1.48159 * 120.85332 * 359.83261 * 17 13 12 19 19 O 1.21361 * 122.23667 * 168.29118 * 18 17 13 20 20 H 0.96999 * 119.99983 * 0.02562 * 1 2 3 21 21 H 1.09008 * 109.34334 * 295.43718 * 11 9 7 22 22 H 1.08995 * 109.34918 * 55.13097 * 11 9 7 23 23 H 1.09001 * 109.48987 * 172.79177 * 12 11 9 24 24 H 1.09003 * 109.48560 * 292.86008 * 12 11 9 25 25 H 1.07997 * 124.61123 * 179.97438 * 15 14 13 26 26 H 1.08001 * 123.31834 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6062 1.9832 -1.3943 5 1 1.3962 2.6817 0.5878 6 1 3.4876 1.4742 0.8067 7 6 2.0045 -1.1940 -0.0005 8 1 1.4652 -2.1290 -0.0401 9 6 3.5107 -1.1945 0.0477 10 1 3.8908 -0.2477 -0.3360 11 6 4.0541 -2.3501 -0.7992 12 6 5.5819 -2.2916 -0.8558 13 6 6.1339 -2.2200 0.5523 14 16 7.7166 -2.6244 1.0338 15 6 7.3936 -2.2379 2.7141 16 6 6.1435 -1.8262 2.8698 17 6 5.3906 -1.8042 1.6386 18 6 3.9766 -1.3916 1.4786 19 8 3.2403 -1.2222 2.4284 20 1 -0.4850 0.8400 -0.0004 21 1 3.7452 -3.2977 -0.3576 22 1 3.6545 -2.2757 -1.8105 23 1 5.9620 -3.1854 -1.3505 24 1 5.8915 -1.4075 -1.4132 25 1 8.1153 -2.3237 3.5129 26 1 5.7290 -1.5359 3.8239 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000222776116.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:30 Heat of formation + Delta-G solvation = -17.027756 kcal Electronic energy + Delta-G solvation = -12847.857377 eV Core-core repulsion = 10596.685341 eV Total energy + Delta-G solvation = -2251.172036 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.046 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.06826 -36.32663 -34.76679 -32.44362 -29.61562 -27.83609 -24.97666 -22.58238 -21.72127 -19.94297 -17.49623 -17.01191 -16.74231 -15.44491 -14.53176 -14.37283 -13.58600 -13.41169 -13.24621 -13.02441 -12.68867 -12.47885 -11.63661 -11.49944 -11.12834 -10.90830 -10.89424 -10.72866 -9.88982 -9.78781 -9.34627 -8.72246 -8.52704 -8.35345 -8.10924 -6.11165 -4.12407 1.03501 1.72131 2.14856 2.29854 3.25526 3.35038 3.36639 3.77319 4.39288 4.77311 4.97848 5.25446 5.32300 5.49664 5.58799 5.76535 5.97911 6.11244 6.19714 6.30740 6.38302 6.45665 6.63746 6.97621 7.02824 7.59346 8.41147 8.68868 8.92514 9.50568 11.01979 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.042652 B = 0.009702 C = 0.009118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.323915 B = 2885.431269 C = 3070.108914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.083 3.917 3 Si 0.873 3.127 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.269 1.269 7 C -0.504 4.504 8 H 0.078 0.922 9 C -0.021 4.021 10 H 0.065 0.935 11 C -0.095 4.095 12 C -0.057 4.057 13 C -0.161 4.161 14 S 0.147 5.853 15 C -0.249 4.249 16 C -0.087 4.087 17 C -0.193 4.193 18 C 0.404 3.596 19 O -0.439 6.439 20 H 0.266 0.734 21 H 0.060 0.940 22 H 0.079 0.921 23 H 0.076 0.924 24 H 0.084 0.916 25 H 0.163 0.837 26 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.876 -3.827 -0.304 16.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.121 4.121 3 Si 0.700 3.300 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.541 4.541 8 H 0.096 0.904 9 C -0.040 4.040 10 H 0.082 0.918 11 C -0.134 4.134 12 C -0.096 4.096 13 C -0.280 4.280 14 S 0.414 5.586 15 C -0.383 4.383 16 C -0.116 4.116 17 C -0.208 4.208 18 C 0.277 3.723 19 O -0.312 6.312 20 H 0.076 0.924 21 H 0.079 0.921 22 H 0.098 0.902 23 H 0.094 0.906 24 H 0.102 0.898 25 H 0.180 0.820 26 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 16.589 -4.139 -0.526 17.106 hybrid contribution -0.709 1.439 0.982 1.881 sum 15.880 -2.700 0.456 16.115 Atomic orbital electron populations 1.69873 1.06270 1.27148 1.49472 1.25002 0.94702 0.98835 0.93519 0.86909 0.80452 0.84100 0.78520 1.19853 1.21047 1.19417 1.20618 0.87164 0.95010 1.51314 0.90373 1.19859 0.98557 0.96106 0.89486 0.91771 1.21578 0.90511 0.99737 1.01597 1.20538 0.97885 1.02364 0.88839 1.25474 0.98124 1.03872 1.00565 1.82570 1.09749 1.64804 1.01509 1.25205 1.01090 1.12333 0.99684 1.21135 0.92847 0.98982 0.98597 1.22399 0.99350 1.07435 0.91593 1.23893 0.83139 0.71495 0.93784 1.90416 1.57596 1.38462 1.44719 0.92435 0.92108 0.90192 0.90552 0.89787 0.81995 0.83684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.49 13.96 55.43 0.77 -26.72 15 2 C 0.08 2.42 5.47 -17.82 -0.10 2.32 15 3 Si 0.87 21.93 26.93 -169.99 -4.58 17.36 15 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 15 5 H -0.28 -7.15 7.11 56.52 0.40 -6.75 15 6 H -0.27 -6.70 6.90 56.52 0.39 -6.31 15 7 C -0.50 -14.22 8.35 -34.44 -0.29 -14.51 15 8 H 0.08 2.38 8.06 -52.48 -0.42 1.96 15 9 C -0.02 -0.48 1.94 -92.28 -0.18 -0.66 15 10 H 0.06 1.49 5.37 -51.93 -0.28 1.21 15 11 C -0.10 -1.76 5.11 -26.61 -0.14 -1.90 15 12 C -0.06 -0.85 6.22 -27.53 -0.17 -1.02 15 13 C -0.16 -2.62 6.28 -34.03 -0.21 -2.84 15 14 S 0.15 1.88 22.98 -107.50 -2.47 -0.59 15 15 C -0.25 -3.33 11.09 28.82 0.32 -3.01 15 16 C -0.09 -1.44 10.37 -39.10 -0.41 -1.85 15 17 C -0.19 -3.74 6.04 -103.50 -0.63 -4.37 15 18 C 0.40 9.60 6.85 -29.71 -0.20 9.40 15 19 O -0.44 -11.93 17.11 5.49 0.09 -11.83 15 20 H 0.27 7.67 8.31 -40.82 -0.34 7.33 15 21 H 0.06 1.14 8.14 -51.92 -0.42 0.72 15 22 H 0.08 1.40 8.14 -51.93 -0.42 0.98 15 23 H 0.08 0.92 8.14 -51.93 -0.42 0.50 15 24 H 0.08 1.14 8.14 -51.93 -0.42 0.72 15 25 H 0.16 1.65 8.06 -52.49 -0.42 1.22 15 26 H 0.15 2.31 8.06 -52.49 -0.42 1.89 15 LS Contribution 240.24 15.07 3.62 3.62 Total: -1.00 -32.24 240.24 -6.94 -39.19 By element: Atomic # 1 Polarization: -0.19 SS G_CDS: -2.38 Total: -2.58 kcal Atomic # 6 Polarization: -16.44 SS G_CDS: -2.00 Total: -18.44 kcal Atomic # 7 Polarization: -27.49 SS G_CDS: 0.77 Total: -26.72 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.09 Total: -11.83 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.58 Total: 17.36 kcal Atomic # 16 Polarization: 1.88 SS G_CDS: -2.47 Total: -0.59 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -32.24 -6.94 -39.19 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000222776116.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.159 kcal (2) G-P(sol) polarization free energy of solvation -32.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds