Wall clock time and date at job start Mon Mar 30 2020 03:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00034 * 2 1 4 4 H 1.48497 * 109.47298 * 264.81835 * 3 2 1 5 5 H 1.48500 * 109.47108 * 24.82246 * 3 2 1 6 6 H 1.48495 * 109.47128 * 144.81723 * 3 2 1 7 7 C 1.37873 * 119.99805 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00142 * 2.39619 * 7 2 1 9 9 C 1.50699 * 119.99961 * 182.11779 * 7 2 1 10 10 H 1.09006 * 109.68888 * 336.24247 * 9 7 2 11 11 C 1.53224 * 109.69535 * 215.69933 * 9 7 2 12 12 C 1.53001 * 110.22782 * 175.21156 * 11 9 7 13 13 C 1.51412 * 109.35432 * 52.82476 * 12 11 9 14 14 S 1.70299 * 126.19407 * 159.40712 * 13 12 11 15 15 C 1.75414 * 92.71833 * 180.02562 * 14 13 12 16 16 C 1.32529 * 110.77231 * 359.97438 * 15 14 13 17 17 C 1.38039 * 123.35201 * 339.36463 * 13 12 11 18 18 C 1.48159 * 120.85332 * 359.83261 * 17 13 12 19 19 O 1.21361 * 122.23667 * 168.29118 * 18 17 13 20 20 H 0.96999 * 119.99983 * 0.02562 * 1 2 3 21 21 H 1.09008 * 109.34334 * 295.43718 * 11 9 7 22 22 H 1.08995 * 109.34918 * 55.13097 * 11 9 7 23 23 H 1.09001 * 109.48987 * 172.79177 * 12 11 9 24 24 H 1.09003 * 109.48560 * 292.86008 * 12 11 9 25 25 H 1.07997 * 124.61123 * 179.97438 * 15 14 13 26 26 H 1.08001 * 123.31834 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6062 1.9832 -1.3943 5 1 1.3962 2.6817 0.5878 6 1 3.4876 1.4742 0.8067 7 6 2.0045 -1.1940 -0.0005 8 1 1.4652 -2.1290 -0.0401 9 6 3.5107 -1.1945 0.0477 10 1 3.8908 -0.2477 -0.3360 11 6 4.0541 -2.3501 -0.7992 12 6 5.5819 -2.2916 -0.8558 13 6 6.1339 -2.2200 0.5523 14 16 7.7166 -2.6244 1.0338 15 6 7.3936 -2.2379 2.7141 16 6 6.1435 -1.8262 2.8698 17 6 5.3906 -1.8042 1.6386 18 6 3.9766 -1.3916 1.4786 19 8 3.2403 -1.2222 2.4284 20 1 -0.4850 0.8400 -0.0004 21 1 3.7452 -3.2977 -0.3576 22 1 3.6545 -2.2757 -1.8105 23 1 5.9620 -3.1854 -1.3505 24 1 5.8915 -1.4075 -1.4132 25 1 8.1153 -2.3237 3.5129 26 1 5.7290 -1.5359 3.8239 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000222776116.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:30 Heat of formation + Delta-G solvation = -38.505242 kcal Electronic energy + Delta-G solvation = -12848.788711 eV Core-core repulsion = 10596.685341 eV Total energy + Delta-G solvation = -2252.103369 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.046 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.68660 -37.88901 -36.30970 -34.46970 -31.30725 -29.22758 -26.82161 -24.05755 -23.17336 -21.48850 -19.30356 -18.66965 -18.19826 -16.92348 -16.50249 -15.89142 -15.26362 -15.02622 -14.69391 -14.44891 -14.34004 -14.14122 -13.25589 -12.93180 -12.81214 -12.65287 -12.26678 -12.02942 -11.86928 -11.55432 -11.39577 -10.84681 -10.18818 -9.65506 -9.27638 -8.35522 -6.40514 -0.24916 0.61652 0.89980 0.99629 1.24079 1.30709 1.36949 2.16489 2.28217 2.92361 3.59034 3.69591 4.06330 4.18171 4.29020 4.47315 4.63896 4.68681 4.79844 4.85537 5.04496 5.12353 5.31117 5.36007 5.47342 5.58488 6.18340 6.62918 6.92422 7.25800 8.82011 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.042652 B = 0.009702 C = 0.009118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.323915 B = 2885.431269 C = 3070.108914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.020 3.980 3 Si 0.936 3.064 4 H -0.239 1.239 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.508 4.508 8 H 0.033 0.967 9 C -0.031 4.031 10 H 0.072 0.928 11 C -0.091 4.091 12 C -0.054 4.054 13 C -0.167 4.167 14 S 0.259 5.741 15 C -0.237 4.237 16 C -0.117 4.117 17 C -0.241 4.241 18 C 0.397 3.603 19 O -0.499 6.499 20 H 0.267 0.733 21 H 0.048 0.952 22 H 0.088 0.912 23 H 0.118 0.882 24 H 0.108 0.892 25 H 0.200 0.800 26 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.534 -4.023 -1.449 20.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.178 4.178 3 Si 0.759 3.241 4 H -0.163 1.163 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.546 4.546 8 H 0.052 0.948 9 C -0.050 4.050 10 H 0.090 0.910 11 C -0.130 4.130 12 C -0.092 4.092 13 C -0.287 4.287 14 S 0.526 5.474 15 C -0.371 4.371 16 C -0.145 4.145 17 C -0.256 4.256 18 C 0.275 3.725 19 O -0.377 6.377 20 H 0.076 0.924 21 H 0.067 0.933 22 H 0.107 0.893 23 H 0.136 0.864 24 H 0.126 0.874 25 H 0.217 0.783 26 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 21.290 -4.355 -1.704 21.797 hybrid contribution -2.043 1.332 1.323 2.775 sum 19.247 -3.023 -0.381 19.487 Atomic orbital electron populations 1.70028 1.08161 1.28160 1.51942 1.25913 0.95512 1.02903 0.93435 0.85910 0.78815 0.79172 0.80184 1.16315 1.21241 1.19335 1.20894 0.90201 0.93242 1.50221 0.94837 1.19949 0.95387 0.98596 0.91063 0.91015 1.21464 0.93988 0.96824 1.00689 1.20618 0.94355 1.05466 0.88776 1.25869 1.00592 1.01831 1.00362 1.82260 1.04800 1.61176 0.99211 1.25694 1.00195 1.09318 1.01912 1.21058 0.94227 1.01619 0.97604 1.21959 0.97320 1.12008 0.94327 1.24067 0.85428 0.70120 0.92904 1.90377 1.59657 1.41702 1.45932 0.92367 0.93348 0.89343 0.86425 0.87414 0.78327 0.84636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.24 13.96 21.45 0.30 -60.94 15 2 C 0.02 1.24 5.47 84.65 0.46 1.70 15 3 Si 0.94 46.12 26.93 68.60 1.85 47.96 15 4 H -0.24 -10.45 7.11 99.48 0.71 -9.74 15 5 H -0.29 -14.08 7.11 99.48 0.71 -13.38 15 6 H -0.27 -13.07 6.90 99.48 0.69 -12.38 15 7 C -0.51 -30.22 8.35 25.60 0.21 -30.00 15 8 H 0.03 2.21 8.06 -2.91 -0.02 2.18 15 9 C -0.03 -1.46 1.94 -11.87 -0.02 -1.48 15 10 H 0.07 3.28 5.37 -2.38 -0.01 3.26 15 11 C -0.09 -3.28 5.11 30.67 0.16 -3.12 15 12 C -0.05 -1.37 6.22 30.07 0.19 -1.18 15 13 C -0.17 -4.80 6.28 25.86 0.16 -4.64 15 14 S 0.26 5.05 22.98 -56.49 -1.30 3.75 15 15 C -0.24 -5.29 11.09 66.68 0.74 -4.55 15 16 C -0.12 -3.73 10.37 22.68 0.24 -3.49 15 17 C -0.24 -9.12 6.04 -19.14 -0.12 -9.24 15 18 C 0.40 19.47 6.85 28.67 0.20 19.66 15 19 O -0.50 -28.81 17.11 -3.28 -0.06 -28.86 15 20 H 0.27 16.18 8.31 -92.71 -0.77 15.41 15 21 H 0.05 1.83 8.14 -2.38 -0.02 1.81 15 22 H 0.09 3.00 8.14 -2.39 -0.02 2.98 15 23 H 0.12 2.12 8.14 -2.39 -0.02 2.11 15 24 H 0.11 2.34 8.14 -2.39 -0.02 2.32 15 25 H 0.20 2.90 8.06 -2.91 -0.02 2.88 15 26 H 0.14 4.40 8.06 -2.91 -0.02 4.38 15 Total: -1.00 -76.77 240.24 4.18 -72.59 By element: Atomic # 1 Polarization: 0.66 SS G_CDS: 1.17 Total: 1.83 kcal Atomic # 6 Polarization: -38.54 SS G_CDS: 2.22 Total: -36.33 kcal Atomic # 7 Polarization: -61.24 SS G_CDS: 0.30 Total: -60.94 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -0.06 Total: -28.86 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 1.85 Total: 47.96 kcal Atomic # 16 Polarization: 5.05 SS G_CDS: -1.30 Total: 3.75 kcal Total: -76.77 4.18 -72.59 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000222776116.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.087 kcal (2) G-P(sol) polarization free energy of solvation -76.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds