Wall clock time and date at job start Mon Mar 30 2020 02:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46989 * 2 1 4 4 H 1.08996 * 109.47178 * 54.32702 * 3 2 1 5 5 C 1.50698 * 109.47406 * 174.33016 * 3 2 1 6 6 H 1.07998 * 120.00632 * 119.99971 * 5 3 2 7 7 C 1.37875 * 119.99636 * 300.00046 * 5 3 2 8 8 N 1.31513 * 120.00122 * 179.97438 * 7 5 3 9 9 Si 1.86803 * 120.00304 * 359.97438 * 7 5 3 10 10 H 1.48501 * 109.46833 * 89.99686 * 9 7 5 11 11 H 1.48501 * 109.46795 * 330.00230 * 9 7 5 12 12 H 1.48491 * 109.47566 * 209.99736 * 9 7 5 13 13 N 1.46908 * 109.47344 * 294.32962 * 3 2 1 14 14 C 1.46891 * 111.00162 * 155.93153 * 13 3 2 15 15 H 1.09003 * 113.63059 * 21.45613 * 14 13 3 16 16 C 1.56750 * 114.70397 * 246.69241 * 14 13 3 17 17 C 1.49890 * 81.36851 * 201.09827 * 16 14 13 18 18 H 1.09002 * 114.63364 * 289.91954 * 17 16 14 19 19 C 1.52375 * 128.37847 * 128.96587 * 17 16 14 20 20 C 1.53581 * 99.70652 * 232.63000 * 19 17 16 21 21 C 1.33351 * 108.07379 * 31.33661 * 20 19 17 22 22 C 1.46768 * 108.42552 * 3.08018 * 21 20 19 23 23 H 1.08997 * 109.82710 * 82.72326 * 22 21 20 24 24 H 1.09002 * 109.47250 * 305.78576 * 1 2 3 25 25 H 1.08996 * 109.47646 * 65.79034 * 1 2 3 26 26 H 1.08997 * 109.47056 * 185.79069 * 1 2 3 27 27 H 1.09000 * 109.47073 * 240.00634 * 2 1 3 28 28 H 1.08994 * 109.47284 * 120.00238 * 2 1 3 29 29 H 0.96998 * 120.00290 * 180.02562 * 8 7 5 30 30 H 1.00902 * 110.99837 * 31.97841 * 13 3 2 31 31 H 1.09008 * 114.54896 * 314.21950 * 16 14 13 32 32 H 1.09004 * 114.55262 * 87.97741 * 16 14 13 33 33 H 1.09001 * 111.02357 * 115.26987 * 19 17 16 34 34 H 1.09001 * 112.07301 * 350.40233 * 19 17 16 35 35 H 1.08008 * 125.96461 * 211.36759 * 20 19 17 36 36 H 1.08001 * 125.78207 * 183.04332 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5960 1.9848 0.8348 5 6 3.5404 1.4449 0.1404 6 1 4.1542 1.8865 -0.6307 7 6 4.1295 0.8834 1.2533 8 7 5.4389 0.8850 1.3756 9 14 3.0678 0.1202 2.5874 10 1 2.8493 -1.3171 2.2844 11 1 1.7589 0.8197 2.6389 12 1 3.7511 0.2511 3.8993 13 7 1.6652 2.0944 -1.2620 14 6 1.6060 3.5536 -1.1035 15 1 2.1807 3.9245 -0.2548 16 6 0.1719 4.1703 -1.2447 17 6 0.9758 5.4034 -1.5273 18 1 1.5045 5.8087 -0.6646 19 6 0.8491 6.3669 -2.7009 20 6 2.3062 6.3767 -3.1863 21 6 2.8353 5.1796 -2.9312 22 6 1.7896 4.3223 -2.3606 23 1 1.1867 3.8924 -3.1604 24 1 -0.3634 0.6009 0.8337 25 1 -0.3634 0.4214 -0.9372 26 1 -0.3633 -1.0224 0.1037 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 5.8534 0.4896 2.1584 30 1 0.7898 1.7327 -1.6098 31 1 -0.3997 3.7976 -2.0948 32 1 -0.3996 4.2049 -0.3172 33 1 0.5387 7.3557 -2.3633 34 1 0.1786 5.9875 -3.4719 35 1 2.8139 7.2083 -3.6525 36 1 3.8595 4.8899 -3.1141 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227025284.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:21 Heat of formation + Delta-G solvation = 106.074314 kcal Electronic energy + Delta-G solvation = -15427.392194 eV Core-core repulsion = 13108.190245 eV Total energy + Delta-G solvation = -2319.201949 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.26058 -36.36228 -33.69628 -31.97968 -30.26034 -27.93061 -26.81301 -23.72662 -22.75971 -21.38691 -20.68913 -19.51395 -18.13491 -16.68543 -15.39355 -15.23629 -14.55391 -14.29867 -14.08776 -13.40283 -12.89998 -12.62732 -12.33989 -12.09298 -11.77865 -11.52769 -11.45724 -11.26441 -11.08928 -10.78824 -10.64803 -10.44268 -10.25968 -9.94832 -9.44613 -9.19620 -8.83041 -8.50107 -8.45098 -7.28587 -6.01842 -3.98652 2.40049 3.26725 3.37066 3.39255 4.03903 4.42242 4.77814 4.96023 5.12380 5.22680 5.24767 5.38327 5.50636 5.74631 5.78508 5.80869 5.83904 5.87931 5.96896 6.01195 6.15749 6.22694 6.38931 6.46814 6.50393 6.63493 6.65003 6.71945 6.72967 6.86503 7.14534 7.21436 7.74045 8.02942 8.28084 8.79357 9.11594 9.61362 11.11656 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.033450 B = 0.008400 C = 0.007331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.864908 B = 3332.617536 C = 3818.679161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.136 4.136 3 C 0.189 3.811 4 H 0.001 0.999 5 C -0.495 4.495 6 H 0.081 0.919 7 C 0.066 3.934 8 N -0.902 5.902 9 Si 0.882 3.118 10 H -0.279 1.279 11 H -0.268 1.268 12 H -0.298 1.298 13 N -0.665 5.665 14 C 0.113 3.887 15 H 0.110 0.890 16 C -0.148 4.148 17 C -0.158 4.158 18 H 0.105 0.895 19 C -0.069 4.069 20 C -0.201 4.201 21 C -0.120 4.120 22 C -0.108 4.108 23 H 0.088 0.912 24 H 0.045 0.955 25 H 0.050 0.950 26 H 0.044 0.956 27 H 0.068 0.932 28 H 0.053 0.947 29 H 0.262 0.738 30 H 0.322 0.678 31 H 0.086 0.914 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.125 0.875 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.810 6.709 -5.521 13.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.174 4.174 3 C 0.080 3.920 4 H 0.019 0.981 5 C -0.534 4.534 6 H 0.099 0.901 7 C -0.135 4.135 8 N -0.541 5.541 9 Si 0.712 3.288 10 H -0.206 1.206 11 H -0.193 1.193 12 H -0.225 1.225 13 N -0.294 5.294 14 C 0.002 3.998 15 H 0.128 0.872 16 C -0.188 4.188 17 C -0.177 4.177 18 H 0.123 0.877 19 C -0.106 4.106 20 C -0.218 4.218 21 C -0.138 4.138 22 C -0.127 4.127 23 H 0.106 0.894 24 H 0.064 0.936 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.086 0.914 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.141 0.859 31 H 0.104 0.896 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.143 0.857 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.007 6.624 -5.652 13.265 hybrid contribution -1.089 -0.445 1.187 1.671 sum -11.096 6.179 -4.465 13.462 Atomic orbital electron populations 1.21907 0.98188 1.00515 1.00757 1.22117 0.92959 1.00524 1.01779 1.19655 0.96812 0.89263 0.86242 0.98133 1.21064 0.89203 1.37340 1.05770 0.90133 1.24971 0.94755 0.96030 0.97780 1.69888 1.08941 1.45937 1.29287 0.86949 0.80771 0.79790 0.81244 1.20626 1.19282 1.22544 1.60434 1.35074 1.02461 1.31387 1.22907 0.92644 0.88178 0.96110 0.87232 1.23491 0.97511 0.96550 1.01209 1.23649 1.02117 0.93684 0.98238 0.87705 1.21042 0.94691 0.98714 0.96132 1.24654 0.95889 0.97279 1.04027 1.22928 0.99023 0.94557 0.97263 1.22161 0.96424 0.97075 0.97008 0.89402 0.93556 0.93137 0.93676 0.91370 0.92860 0.92777 0.85945 0.89599 0.92095 0.92302 0.90978 0.85730 0.85964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 9.64 37.16 0.36 -2.29 16 2 C -0.14 -2.90 5.02 -26.73 -0.13 -3.03 16 3 C 0.19 4.39 1.47 -68.86 -0.10 4.29 16 4 H 0.00 0.03 6.91 -51.93 -0.36 -0.33 16 5 C -0.50 -13.98 9.23 -34.44 -0.32 -14.30 16 6 H 0.08 2.54 8.06 -52.49 -0.42 2.11 16 7 C 0.07 1.90 5.45 -17.82 -0.10 1.80 16 8 N -0.90 -27.82 13.96 55.43 0.77 -27.05 16 9 Si 0.88 21.94 24.42 -169.99 -4.15 17.79 16 10 H -0.28 -6.78 6.82 56.52 0.39 -6.39 16 11 H -0.27 -6.36 6.53 56.52 0.37 -6.00 16 12 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 13 N -0.66 -13.38 6.44 -114.66 -0.74 -14.12 16 14 C 0.11 2.04 3.84 -80.22 -0.31 1.73 16 15 H 0.11 2.24 7.34 -51.93 -0.38 1.86 16 16 C -0.15 -2.12 7.58 -43.93 -0.33 -2.45 16 17 C -0.16 -2.23 4.67 -101.52 -0.47 -2.71 16 18 H 0.10 1.56 7.66 -51.93 -0.40 1.16 16 19 C -0.07 -0.85 6.66 -26.75 -0.18 -1.02 16 20 C -0.20 -2.64 11.00 -34.56 -0.38 -3.02 16 21 C -0.12 -1.85 10.68 -37.84 -0.40 -2.25 16 22 C -0.11 -1.73 3.79 -110.20 -0.42 -2.15 16 23 H 0.09 1.38 7.25 -51.93 -0.38 1.00 16 24 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.05 0.75 6.66 -51.93 -0.35 0.41 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 28 H 0.05 1.22 3.22 -51.93 -0.17 1.06 16 29 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 30 H 0.32 5.68 6.31 -39.29 -0.25 5.43 16 31 H 0.09 1.12 7.44 -51.92 -0.39 0.73 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.84 8.12 -51.93 -0.42 0.42 16 35 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 36 H 0.12 1.92 8.06 -52.49 -0.42 1.50 16 LS Contribution 278.39 15.07 4.20 4.20 Total: -1.00 -29.78 278.39 -8.36 -38.14 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -5.65 Total: 6.45 kcal Atomic # 6 Polarization: -22.62 SS G_CDS: -2.79 Total: -25.41 kcal Atomic # 7 Polarization: -41.20 SS G_CDS: 0.03 Total: -41.16 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.15 Total: 17.79 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.78 -8.36 -38.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227025284.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.213 kcal (2) G-P(sol) polarization free energy of solvation -29.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds