Wall clock time and date at job start Mon Mar 30 2020 02:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46989 * 2 1 4 4 H 1.08996 * 109.47178 * 54.32702 * 3 2 1 5 5 C 1.50698 * 109.47406 * 174.33016 * 3 2 1 6 6 H 1.07998 * 120.00632 * 119.99971 * 5 3 2 7 7 C 1.37875 * 119.99636 * 300.00046 * 5 3 2 8 8 N 1.31513 * 120.00122 * 179.97438 * 7 5 3 9 9 Si 1.86803 * 120.00304 * 359.97438 * 7 5 3 10 10 H 1.48501 * 109.46833 * 89.99686 * 9 7 5 11 11 H 1.48501 * 109.46795 * 330.00230 * 9 7 5 12 12 H 1.48491 * 109.47566 * 209.99736 * 9 7 5 13 13 N 1.46908 * 109.47344 * 294.32962 * 3 2 1 14 14 C 1.46891 * 111.00162 * 155.93153 * 13 3 2 15 15 H 1.09003 * 113.63059 * 21.45613 * 14 13 3 16 16 C 1.56750 * 114.70397 * 246.69241 * 14 13 3 17 17 C 1.49890 * 81.36851 * 201.09827 * 16 14 13 18 18 H 1.09002 * 114.63364 * 289.91954 * 17 16 14 19 19 C 1.52375 * 128.37847 * 128.96587 * 17 16 14 20 20 C 1.53581 * 99.70652 * 232.63000 * 19 17 16 21 21 C 1.33351 * 108.07379 * 31.33661 * 20 19 17 22 22 C 1.46768 * 108.42552 * 3.08018 * 21 20 19 23 23 H 1.08997 * 109.82710 * 82.72326 * 22 21 20 24 24 H 1.09002 * 109.47250 * 305.78576 * 1 2 3 25 25 H 1.08996 * 109.47646 * 65.79034 * 1 2 3 26 26 H 1.08997 * 109.47056 * 185.79069 * 1 2 3 27 27 H 1.09000 * 109.47073 * 240.00634 * 2 1 3 28 28 H 1.08994 * 109.47284 * 120.00238 * 2 1 3 29 29 H 0.96998 * 120.00290 * 180.02562 * 8 7 5 30 30 H 1.00902 * 110.99837 * 31.97841 * 13 3 2 31 31 H 1.09008 * 114.54896 * 314.21950 * 16 14 13 32 32 H 1.09004 * 114.55262 * 87.97741 * 16 14 13 33 33 H 1.09001 * 111.02357 * 115.26987 * 19 17 16 34 34 H 1.09001 * 112.07301 * 350.40233 * 19 17 16 35 35 H 1.08008 * 125.96461 * 211.36759 * 20 19 17 36 36 H 1.08001 * 125.78207 * 183.04332 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5960 1.9848 0.8348 5 6 3.5404 1.4449 0.1404 6 1 4.1542 1.8865 -0.6307 7 6 4.1295 0.8834 1.2533 8 7 5.4389 0.8850 1.3756 9 14 3.0678 0.1202 2.5874 10 1 2.8493 -1.3171 2.2844 11 1 1.7589 0.8197 2.6389 12 1 3.7511 0.2511 3.8993 13 7 1.6652 2.0944 -1.2620 14 6 1.6060 3.5536 -1.1035 15 1 2.1807 3.9245 -0.2548 16 6 0.1719 4.1703 -1.2447 17 6 0.9758 5.4034 -1.5273 18 1 1.5045 5.8087 -0.6646 19 6 0.8491 6.3669 -2.7009 20 6 2.3062 6.3767 -3.1863 21 6 2.8353 5.1796 -2.9312 22 6 1.7896 4.3223 -2.3606 23 1 1.1867 3.8924 -3.1604 24 1 -0.3634 0.6009 0.8337 25 1 -0.3634 0.4214 -0.9372 26 1 -0.3633 -1.0224 0.1037 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 5.8534 0.4896 2.1584 30 1 0.7898 1.7327 -1.6098 31 1 -0.3997 3.7976 -2.0948 32 1 -0.3996 4.2049 -0.3172 33 1 0.5387 7.3557 -2.3633 34 1 0.1786 5.9875 -3.4719 35 1 2.8139 7.2083 -3.6525 36 1 3.8595 4.8899 -3.1141 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227025284.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:21 Heat of formation + Delta-G solvation = 86.291716 kcal Electronic energy + Delta-G solvation = -15428.250032 eV Core-core repulsion = 13108.190245 eV Total energy + Delta-G solvation = -2320.059787 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.47874 -38.03435 -35.09570 -34.05963 -31.70270 -29.26695 -28.54412 -24.86924 -24.53085 -22.78236 -22.11380 -21.10434 -19.31901 -18.81080 -17.02648 -16.58887 -16.02905 -15.93793 -15.47627 -14.99323 -14.46677 -14.18416 -13.79210 -13.61004 -13.25429 -13.06073 -12.72252 -12.62990 -12.47617 -12.29292 -12.22313 -11.94416 -11.82119 -11.55921 -11.26427 -11.18650 -10.70704 -10.07181 -9.61444 -8.87519 -8.27663 -6.29415 1.26369 1.27862 1.33094 1.43678 2.31091 2.85316 3.05193 3.46692 3.65322 3.93898 4.00715 4.12446 4.29834 4.36563 4.43237 4.47526 4.63862 4.65830 4.80225 4.82184 4.93251 4.98027 5.04267 5.08905 5.11382 5.19404 5.25931 5.32327 5.46757 5.49613 5.60131 5.73224 6.00066 6.13671 6.53945 6.77925 7.02386 7.35492 8.90091 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.033450 B = 0.008400 C = 0.007331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.864908 B = 3332.617536 C = 3818.679161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.136 4.136 3 C 0.197 3.803 4 H -0.005 1.005 5 C -0.499 4.499 6 H 0.026 0.974 7 C 0.004 3.996 8 N -0.954 5.954 9 Si 0.951 3.049 10 H -0.265 1.265 11 H -0.246 1.246 12 H -0.300 1.300 13 N -0.675 5.675 14 C 0.087 3.913 15 H 0.072 0.928 16 C -0.120 4.120 17 C -0.143 4.143 18 H 0.090 0.910 19 C -0.062 4.062 20 C -0.170 4.170 21 C -0.168 4.168 22 C -0.121 4.121 23 H 0.097 0.903 24 H 0.049 0.951 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.038 0.962 29 H 0.264 0.736 30 H 0.339 0.661 31 H 0.109 0.891 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.148 0.852 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.447 7.235 -5.832 17.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.174 4.174 3 C 0.087 3.913 4 H 0.012 0.988 5 C -0.538 4.538 6 H 0.045 0.955 7 C -0.192 4.192 8 N -0.595 5.595 9 Si 0.778 3.222 10 H -0.191 1.191 11 H -0.170 1.170 12 H -0.228 1.228 13 N -0.306 5.306 14 C -0.023 4.023 15 H 0.090 0.910 16 C -0.159 4.159 17 C -0.162 4.162 18 H 0.108 0.892 19 C -0.099 4.099 20 C -0.188 4.188 21 C -0.187 4.187 22 C -0.140 4.140 23 H 0.114 0.886 24 H 0.069 0.931 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.159 0.841 31 H 0.128 0.872 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.165 0.835 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -13.676 7.163 -5.990 16.559 hybrid contribution 0.163 -0.502 1.175 1.288 sum -13.513 6.661 -4.815 15.817 Atomic orbital electron populations 1.21832 0.94091 1.02413 1.02172 1.22006 0.96594 0.98129 1.00696 1.19392 0.93211 0.91135 0.87523 0.98772 1.21343 0.91992 1.36182 1.04299 0.95537 1.25873 0.96005 0.96763 1.00557 1.70065 1.11234 1.47791 1.30437 0.85814 0.79489 0.79558 0.77316 1.19093 1.17014 1.22799 1.60291 1.36484 1.03809 1.29973 1.22989 0.96003 0.87069 0.96254 0.91011 1.23330 0.94965 0.95134 1.02498 1.23596 1.00967 0.93649 0.98008 0.89183 1.21090 0.94057 0.99363 0.95425 1.25008 0.96421 0.96362 1.00996 1.22958 0.98735 0.96234 1.00734 1.22185 0.97566 0.97665 0.96601 0.88563 0.93148 0.90976 0.91347 0.92108 0.94379 0.92730 0.84076 0.87234 0.91244 0.90013 0.89113 0.83461 0.87870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.44 9.64 71.98 0.69 -3.75 16 2 C -0.14 -5.61 5.02 30.59 0.15 -5.45 16 3 C 0.20 9.20 1.47 44.17 0.07 9.26 16 4 H -0.01 -0.25 6.91 -2.39 -0.02 -0.27 16 5 C -0.50 -29.63 9.23 25.60 0.24 -29.39 16 6 H 0.03 1.80 8.06 -2.91 -0.02 1.77 16 7 C 0.00 0.25 5.45 84.65 0.46 0.71 16 8 N -0.95 -61.74 13.96 21.45 0.30 -61.44 16 9 Si 0.95 45.85 24.42 68.60 1.67 47.53 16 10 H -0.26 -12.09 6.82 99.48 0.68 -11.41 16 11 H -0.25 -10.91 6.53 99.48 0.65 -10.26 16 12 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 13 N -0.67 -27.20 6.44 -516.66 -3.33 -30.53 16 14 C 0.09 3.18 3.84 36.82 0.14 3.33 16 15 H 0.07 3.12 7.34 -2.39 -0.02 3.10 16 16 C -0.12 -3.11 7.58 19.45 0.15 -2.97 16 17 C -0.14 -3.77 4.67 -17.86 -0.08 -3.85 16 18 H 0.09 2.63 7.66 -2.39 -0.02 2.61 16 19 C -0.06 -1.31 6.66 30.58 0.20 -1.11 16 20 C -0.17 -4.13 11.00 25.52 0.28 -3.85 16 21 C -0.17 -5.28 10.68 23.40 0.25 -5.03 16 22 C -0.12 -3.85 3.79 -23.48 -0.09 -3.94 16 23 H 0.10 2.85 7.25 -2.39 -0.02 2.84 16 24 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.07 1.85 6.66 -2.39 -0.02 1.83 16 26 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 28 H 0.04 1.67 3.22 -2.39 -0.01 1.67 16 29 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 30 H 0.34 11.32 6.31 -89.69 -0.57 10.76 16 31 H 0.11 2.37 7.44 -2.38 -0.02 2.35 16 32 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.09 1.67 8.12 -2.39 -0.02 1.65 16 35 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 36 H 0.10 3.51 8.06 -2.91 -0.02 3.49 16 Total: -1.00 -68.73 278.39 1.51 -67.22 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: 0.40 Total: 23.27 kcal Atomic # 6 Polarization: -48.50 SS G_CDS: 2.46 Total: -46.04 kcal Atomic # 7 Polarization: -88.94 SS G_CDS: -3.03 Total: -91.97 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.67 Total: 47.53 kcal Total: -68.73 1.51 -67.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227025284.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.512 kcal (2) G-P(sol) polarization free energy of solvation -68.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds