Wall clock time and date at job start Mon Mar 30 2020 02:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47184 * 2 1 4 4 H 1.08997 * 109.47393 * 55.00106 * 3 2 1 5 5 C 1.50700 * 109.46708 * 174.99818 * 3 2 1 6 6 H 1.08004 * 120.00058 * 120.00157 * 5 3 2 7 7 C 1.37883 * 120.00377 * 299.99934 * 5 3 2 8 8 N 1.31517 * 119.99373 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00118 * 180.27864 * 7 5 3 10 10 H 1.48501 * 109.46933 * 179.72331 * 9 7 5 11 11 H 1.48497 * 109.47203 * 299.72137 * 9 7 5 12 12 H 1.48497 * 109.47201 * 59.72452 * 9 7 5 13 13 N 1.46893 * 109.47069 * 294.99777 * 3 2 1 14 14 C 1.46898 * 111.00058 * 85.00167 * 13 3 2 15 15 H 1.08996 * 113.63183 * 357.76491 * 14 13 3 16 16 C 1.56759 * 114.70297 * 132.53344 * 14 13 3 17 17 C 1.49899 * 81.36785 * 66.83849 * 16 14 13 18 18 H 1.08993 * 114.31238 * 289.93250 * 17 16 14 19 19 C 1.52151 * 129.40667 * 128.83157 * 17 16 14 20 20 C 1.53589 * 100.31351 * 233.59930 * 19 17 16 21 21 C 1.33347 * 108.07132 * 30.77075 * 20 19 17 22 22 C 1.46776 * 108.42835 * 3.07512 * 21 20 19 23 23 H 1.08998 * 109.60048 * 83.51199 * 22 21 20 24 24 H 1.08992 * 109.47112 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46972 * 300.00361 * 1 2 3 26 26 H 1.08999 * 109.46745 * 59.99875 * 1 2 3 27 27 H 1.09001 * 109.47054 * 239.99950 * 2 1 3 28 28 H 1.08999 * 109.46745 * 120.00125 * 2 1 3 29 29 H 0.97004 * 119.99650 * 179.97438 * 8 7 5 30 30 H 1.00901 * 110.99978 * 208.95342 * 13 3 2 31 31 H 1.08997 * 114.55346 * 179.97438 * 16 14 13 32 32 H 1.09004 * 114.54809 * 313.72363 * 16 14 13 33 33 H 1.08997 * 111.24286 * 351.36893 * 19 17 16 34 34 H 1.09004 * 111.23932 * 115.83763 * 19 17 16 35 35 H 1.07991 * 125.96202 * 210.76725 * 20 19 17 36 36 H 1.07995 * 125.78431 * 183.08814 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9816 0.8418 5 6 3.5420 1.4442 0.1239 6 1 4.1473 1.8887 -0.6522 7 6 4.1433 0.8782 1.2281 8 7 3.4061 0.3374 2.1734 9 14 6.0047 0.8873 1.3853 10 1 6.3972 0.2281 2.6568 11 1 6.6016 0.1518 0.2416 12 1 6.4949 2.2890 1.3825 13 7 1.6515 2.0992 -1.2552 14 6 0.2914 2.6467 -1.1638 15 1 -0.1995 2.4408 -0.2127 16 6 0.1435 4.1220 -1.6728 17 6 0.4642 3.4638 -2.9808 18 1 1.4918 3.1104 -3.0653 19 6 -0.2683 3.5517 -4.3115 20 6 -0.4815 2.0596 -4.6070 21 6 -0.6008 1.4203 -3.4429 22 6 -0.5538 2.4120 -2.3619 23 1 -1.5440 2.8448 -2.2194 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.8292 -0.0611 2.9500 30 1 2.3140 2.8171 -1.5079 31 1 -0.8666 4.5256 -1.6043 32 1 0.9111 4.8054 -1.3096 33 1 -1.2195 4.0731 -4.2050 34 1 0.3535 4.0204 -5.0743 35 1 -0.5269 1.6073 -5.5866 36 1 -0.7128 0.3536 -3.3169 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227025304.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:26 Heat of formation + Delta-G solvation = 109.159012 kcal Electronic energy + Delta-G solvation = -15657.606233 eV Core-core repulsion = 13338.538046 eV Total energy + Delta-G solvation = -2319.068187 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.35189 -35.89660 -33.55478 -31.69286 -29.75781 -28.08130 -26.15591 -23.68114 -22.86115 -22.15109 -20.09305 -18.71779 -18.00054 -16.50970 -15.15089 -14.97229 -14.48975 -14.09324 -13.96925 -13.27619 -12.79074 -12.40933 -12.31053 -11.74015 -11.61024 -11.19223 -11.14390 -10.93793 -10.80244 -10.69708 -10.55131 -10.43664 -10.04804 -9.66710 -9.39690 -8.83967 -8.63012 -8.42015 -8.28567 -7.29320 -6.02485 -4.09377 2.52402 3.30795 3.35428 3.38126 4.15237 4.39313 4.83517 5.05324 5.18680 5.28713 5.33902 5.52628 5.63380 5.83680 5.93008 5.99787 6.09383 6.23800 6.31930 6.38018 6.42640 6.51191 6.59666 6.67093 6.78907 6.86532 7.10954 7.17658 7.27662 7.41751 7.60609 7.77821 7.90704 8.30149 8.39940 8.64586 9.00821 9.56260 11.02992 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.038977 B = 0.007822 C = 0.007268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.191122 B = 3578.822278 C = 3851.620141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.105 4.105 3 C 0.217 3.783 4 H 0.004 0.996 5 C -0.521 4.521 6 H 0.058 0.942 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.896 3.104 10 H -0.287 1.287 11 H -0.277 1.277 12 H -0.278 1.278 13 N -0.658 5.658 14 C 0.103 3.897 15 H 0.071 0.929 16 C -0.142 4.142 17 C -0.146 4.146 18 H 0.122 0.878 19 C -0.071 4.071 20 C -0.201 4.201 21 C -0.105 4.105 22 C -0.128 4.128 23 H 0.081 0.919 24 H 0.026 0.974 25 H 0.035 0.965 26 H 0.056 0.944 27 H 0.036 0.964 28 H 0.089 0.911 29 H 0.261 0.739 30 H 0.334 0.666 31 H 0.083 0.917 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.122 0.878 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.172 4.526 -8.058 11.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.143 4.143 3 C 0.110 3.890 4 H 0.022 0.978 5 C -0.559 4.559 6 H 0.077 0.923 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.724 3.276 10 H -0.213 1.213 11 H -0.202 1.202 12 H -0.204 1.204 13 N -0.289 5.289 14 C -0.009 4.009 15 H 0.089 0.911 16 C -0.181 4.181 17 C -0.164 4.164 18 H 0.140 0.860 19 C -0.108 4.108 20 C -0.219 4.219 21 C -0.123 4.123 22 C -0.147 4.147 23 H 0.099 0.901 24 H 0.045 0.955 25 H 0.054 0.946 26 H 0.075 0.925 27 H 0.055 0.945 28 H 0.107 0.893 29 H 0.071 0.929 30 H 0.154 0.846 31 H 0.101 0.899 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.140 0.860 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.340 3.843 -8.161 11.629 hybrid contribution 1.024 0.512 0.649 1.315 sum -6.316 4.354 -7.512 10.737 Atomic orbital electron populations 1.22041 0.99741 0.98954 1.00388 1.21504 0.91453 0.99496 1.01873 1.19202 0.94428 0.91191 0.84205 0.97819 1.21241 0.91292 1.38212 1.05190 0.92347 1.24907 0.98218 0.95137 0.95627 1.69886 1.34939 1.38369 1.09453 0.86600 0.85546 0.78186 0.77294 1.21309 1.20239 1.20355 1.60846 0.99734 1.31724 1.36631 1.22255 0.92473 0.90892 0.95297 0.91082 1.23395 1.01237 0.97362 0.96105 1.23869 1.00343 1.00104 0.92126 0.86016 1.21031 0.99045 0.94232 0.96479 1.24571 1.04822 0.95144 0.97350 1.22683 0.97110 0.98510 0.93997 1.22034 0.97182 0.97047 0.98399 0.90078 0.95480 0.94629 0.92543 0.94483 0.89304 0.92863 0.84554 0.89862 0.91867 0.91555 0.92454 0.86014 0.86548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 8.64 37.16 0.32 -2.87 16 2 C -0.10 -2.55 5.45 -26.73 -0.15 -2.69 16 3 C 0.22 5.36 2.18 -68.87 -0.15 5.21 16 4 H 0.00 0.11 7.62 -51.93 -0.40 -0.28 16 5 C -0.52 -14.08 8.59 -34.44 -0.30 -14.38 16 6 H 0.06 1.56 7.62 -52.48 -0.40 1.16 16 7 C 0.06 1.73 5.29 -17.82 -0.09 1.63 16 8 N -0.89 -25.16 11.29 55.43 0.63 -24.53 16 9 Si 0.90 21.18 29.54 -169.99 -5.02 16.15 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 N -0.66 -13.62 5.35 -114.63 -0.61 -14.23 16 14 C 0.10 1.82 2.96 -80.19 -0.24 1.58 16 15 H 0.07 1.36 6.24 -51.93 -0.32 1.03 16 16 C -0.14 -2.11 7.74 -43.93 -0.34 -2.45 16 17 C -0.15 -2.20 4.53 -101.61 -0.46 -2.66 16 18 H 0.12 2.07 5.93 -51.93 -0.31 1.76 16 19 C -0.07 -0.93 6.63 -26.86 -0.18 -1.11 16 20 C -0.20 -2.78 11.02 -34.56 -0.38 -3.16 16 21 C -0.11 -1.62 10.36 -37.84 -0.39 -2.02 16 22 C -0.13 -2.01 2.80 -110.20 -0.31 -2.32 16 23 H 0.08 1.19 7.27 -51.93 -0.38 0.82 16 24 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.03 0.73 7.94 -51.93 -0.41 0.32 16 26 H 0.06 1.09 4.65 -51.93 -0.24 0.85 16 27 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.09 2.41 5.95 -51.93 -0.31 2.10 16 29 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.33 6.82 6.75 -39.29 -0.27 6.55 16 31 H 0.08 1.08 7.44 -51.93 -0.39 0.70 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.07 0.81 8.13 -51.93 -0.42 0.39 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 36 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 276.23 15.07 4.16 4.16 Total: -1.00 -27.28 276.23 -9.02 -36.30 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -5.51 Total: 7.38 kcal Atomic # 6 Polarization: -22.57 SS G_CDS: -2.66 Total: -25.24 kcal Atomic # 7 Polarization: -38.78 SS G_CDS: 0.01 Total: -38.76 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -27.28 -9.02 -36.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227025304.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.459 kcal (2) G-P(sol) polarization free energy of solvation -27.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds