Wall clock time and date at job start Mon Mar 30 2020 02:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47184 * 2 1 4 4 H 1.08997 * 109.47393 * 55.00106 * 3 2 1 5 5 C 1.50700 * 109.46708 * 174.99818 * 3 2 1 6 6 H 1.08004 * 120.00058 * 120.00157 * 5 3 2 7 7 C 1.37883 * 120.00377 * 299.99934 * 5 3 2 8 8 N 1.31517 * 119.99373 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00118 * 180.27864 * 7 5 3 10 10 H 1.48501 * 109.46933 * 179.72331 * 9 7 5 11 11 H 1.48497 * 109.47203 * 299.72137 * 9 7 5 12 12 H 1.48497 * 109.47201 * 59.72452 * 9 7 5 13 13 N 1.46893 * 109.47069 * 294.99777 * 3 2 1 14 14 C 1.46898 * 111.00058 * 85.00167 * 13 3 2 15 15 H 1.08996 * 113.63183 * 357.76491 * 14 13 3 16 16 C 1.56759 * 114.70297 * 132.53344 * 14 13 3 17 17 C 1.49899 * 81.36785 * 66.83849 * 16 14 13 18 18 H 1.08993 * 114.31238 * 289.93250 * 17 16 14 19 19 C 1.52151 * 129.40667 * 128.83157 * 17 16 14 20 20 C 1.53589 * 100.31351 * 233.59930 * 19 17 16 21 21 C 1.33347 * 108.07132 * 30.77075 * 20 19 17 22 22 C 1.46776 * 108.42835 * 3.07512 * 21 20 19 23 23 H 1.08998 * 109.60048 * 83.51199 * 22 21 20 24 24 H 1.08992 * 109.47112 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46972 * 300.00361 * 1 2 3 26 26 H 1.08999 * 109.46745 * 59.99875 * 1 2 3 27 27 H 1.09001 * 109.47054 * 239.99950 * 2 1 3 28 28 H 1.08999 * 109.46745 * 120.00125 * 2 1 3 29 29 H 0.97004 * 119.99650 * 179.97438 * 8 7 5 30 30 H 1.00901 * 110.99978 * 208.95342 * 13 3 2 31 31 H 1.08997 * 114.55346 * 179.97438 * 16 14 13 32 32 H 1.09004 * 114.54809 * 313.72363 * 16 14 13 33 33 H 1.08997 * 111.24286 * 351.36893 * 19 17 16 34 34 H 1.09004 * 111.23932 * 115.83763 * 19 17 16 35 35 H 1.07991 * 125.96202 * 210.76725 * 20 19 17 36 36 H 1.07995 * 125.78431 * 183.08814 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9816 0.8418 5 6 3.5420 1.4442 0.1239 6 1 4.1473 1.8887 -0.6522 7 6 4.1433 0.8782 1.2281 8 7 3.4061 0.3374 2.1734 9 14 6.0047 0.8873 1.3853 10 1 6.3972 0.2281 2.6568 11 1 6.6016 0.1518 0.2416 12 1 6.4949 2.2890 1.3825 13 7 1.6515 2.0992 -1.2552 14 6 0.2914 2.6467 -1.1638 15 1 -0.1995 2.4408 -0.2127 16 6 0.1435 4.1220 -1.6728 17 6 0.4642 3.4638 -2.9808 18 1 1.4918 3.1104 -3.0653 19 6 -0.2683 3.5517 -4.3115 20 6 -0.4815 2.0596 -4.6070 21 6 -0.6008 1.4203 -3.4429 22 6 -0.5538 2.4120 -2.3619 23 1 -1.5440 2.8448 -2.2194 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.8292 -0.0611 2.9500 30 1 2.3140 2.8171 -1.5079 31 1 -0.8666 4.5256 -1.6043 32 1 0.9111 4.8054 -1.3096 33 1 -1.2195 4.0731 -4.2050 34 1 0.3535 4.0204 -5.0743 35 1 -0.5269 1.6073 -5.5866 36 1 -0.7128 0.3536 -3.3169 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227025304.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:26 Heat of formation + Delta-G solvation = 94.057885 kcal Electronic energy + Delta-G solvation = -15658.261067 eV Core-core repulsion = 13338.538046 eV Total energy + Delta-G solvation = -2319.723021 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.61016 -37.63445 -35.06211 -33.59953 -31.46253 -29.30953 -28.02325 -24.87385 -24.72521 -23.49873 -21.77734 -20.22392 -19.32084 -18.38703 -16.90741 -16.36996 -15.93705 -15.67116 -15.41493 -14.87216 -14.19587 -14.11933 -13.95785 -13.46260 -13.08078 -12.82709 -12.74151 -12.57662 -12.38523 -12.15990 -12.00326 -11.89854 -11.71597 -11.48077 -11.17697 -10.79755 -10.50511 -9.87883 -9.44776 -8.98219 -8.11920 -6.26245 1.39867 1.41585 1.43254 1.50758 2.41173 2.95285 3.15235 3.49655 3.63270 3.99975 4.21004 4.25585 4.53343 4.57290 4.60051 4.68503 4.78836 4.84730 4.87379 4.95739 5.02881 5.11685 5.15436 5.22346 5.34952 5.39401 5.49704 5.64465 5.65095 5.69434 5.73347 5.90577 6.14458 6.30117 6.50802 6.80728 7.01329 7.43800 8.92556 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.038977 B = 0.007822 C = 0.007268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.191122 B = 3578.822278 C = 3851.620141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.098 4.098 3 C 0.225 3.775 4 H -0.030 1.030 5 C -0.540 4.540 6 H 0.057 0.943 7 C 0.014 3.986 8 N -0.915 5.915 9 Si 0.960 3.040 10 H -0.284 1.284 11 H -0.273 1.273 12 H -0.270 1.270 13 N -0.654 5.654 14 C 0.080 3.920 15 H 0.053 0.947 16 C -0.123 4.123 17 C -0.141 4.141 18 H 0.099 0.901 19 C -0.066 4.066 20 C -0.183 4.183 21 C -0.139 4.139 22 C -0.127 4.127 23 H 0.098 0.902 24 H 0.042 0.958 25 H 0.030 0.970 26 H 0.070 0.930 27 H 0.025 0.975 28 H 0.058 0.942 29 H 0.262 0.738 30 H 0.334 0.666 31 H 0.110 0.890 32 H 0.060 0.940 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.142 0.858 36 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.643 5.510 -9.655 13.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.137 4.137 3 C 0.117 3.883 4 H -0.013 1.013 5 C -0.579 4.579 6 H 0.076 0.924 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.785 3.215 10 H -0.210 1.210 11 H -0.198 1.198 12 H -0.196 1.196 13 N -0.285 5.285 14 C -0.031 4.031 15 H 0.071 0.929 16 C -0.162 4.162 17 C -0.159 4.159 18 H 0.117 0.883 19 C -0.103 4.103 20 C -0.201 4.201 21 C -0.157 4.157 22 C -0.146 4.146 23 H 0.116 0.884 24 H 0.061 0.939 25 H 0.050 0.950 26 H 0.089 0.911 27 H 0.043 0.957 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.153 0.847 31 H 0.128 0.872 32 H 0.079 0.921 33 H 0.104 0.896 34 H 0.090 0.910 35 H 0.160 0.840 36 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -7.824 4.837 -9.774 13.422 hybrid contribution 1.138 0.213 1.120 1.610 sum -6.686 5.050 -8.654 12.046 Atomic orbital electron populations 1.21901 0.96954 1.00165 1.00861 1.21326 0.93941 0.98776 0.99646 1.18944 0.93267 0.91358 0.84758 1.01262 1.21609 0.92724 1.38220 1.05327 0.92445 1.25706 1.02674 0.94780 0.95343 1.70025 1.36641 1.38938 1.09845 0.85586 0.80180 0.78429 0.77264 1.20955 1.19834 1.19558 1.60781 1.01280 1.32294 1.34138 1.22340 0.90947 0.94109 0.95685 0.92902 1.23318 1.02702 0.95021 0.95140 1.23726 0.99170 0.99622 0.93399 0.88300 1.21055 0.99850 0.93981 0.95377 1.24874 1.02022 0.95523 0.97649 1.22734 0.99900 0.98429 0.94646 1.21996 0.97645 0.97883 0.97088 0.88446 0.93856 0.95037 0.91135 0.95651 0.92336 0.92907 0.84655 0.87200 0.92087 0.89650 0.91028 0.84022 0.87223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.91 8.64 71.98 0.62 -5.29 16 2 C -0.10 -4.92 5.45 30.60 0.17 -4.75 16 3 C 0.23 11.48 2.18 44.17 0.10 11.58 16 4 H -0.03 -1.71 7.62 -2.39 -0.02 -1.73 16 5 C -0.54 -29.89 8.59 25.60 0.22 -29.67 16 6 H 0.06 3.10 7.62 -2.91 -0.02 3.08 16 7 C 0.01 0.80 5.29 84.66 0.45 1.24 16 8 N -0.92 -53.19 11.29 21.45 0.24 -52.95 16 9 Si 0.96 43.81 29.54 68.60 2.03 45.84 16 10 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 12 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 13 N -0.65 -27.47 5.35 -516.58 -2.76 -30.23 16 14 C 0.08 2.82 2.96 36.83 0.11 2.93 16 15 H 0.05 2.04 6.24 -2.39 -0.01 2.03 16 16 C -0.12 -3.41 7.74 19.45 0.15 -3.26 16 17 C -0.14 -3.94 4.53 -17.91 -0.08 -4.02 16 18 H 0.10 3.26 5.93 -2.39 -0.01 3.24 16 19 C -0.07 -1.49 6.63 30.51 0.20 -1.29 16 20 C -0.18 -4.51 11.02 25.52 0.28 -4.23 16 21 C -0.14 -4.05 10.36 23.40 0.24 -3.81 16 22 C -0.13 -3.78 2.80 -23.47 -0.07 -3.85 16 23 H 0.10 2.58 7.27 -2.39 -0.02 2.56 16 24 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.03 1.31 7.94 -2.39 -0.02 1.29 16 26 H 0.07 2.72 4.65 -2.39 -0.01 2.71 16 27 H 0.02 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.06 3.29 5.95 -2.39 -0.01 3.28 16 29 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 30 H 0.33 13.82 6.75 -89.69 -0.61 13.22 16 31 H 0.11 2.48 7.44 -2.39 -0.02 2.46 16 32 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 33 H 0.09 1.69 8.13 -2.39 -0.02 1.67 16 34 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 35 H 0.14 2.90 8.06 -2.91 -0.02 2.88 16 36 H 0.11 3.29 8.06 -2.91 -0.02 3.27 16 Total: -1.00 -59.16 276.23 2.35 -56.82 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: 0.45 Total: 24.93 kcal Atomic # 6 Polarization: -46.80 SS G_CDS: 2.39 Total: -44.41 kcal Atomic # 7 Polarization: -80.66 SS G_CDS: -2.52 Total: -83.18 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -59.16 2.35 -56.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227025304.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.874 kcal (2) G-P(sol) polarization free energy of solvation -59.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds