Wall clock time and date at job start Mon Mar 30 2020 02:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52991 * 109.47158 * 2 1 4 4 H 1.09000 * 109.47379 * 304.10855 * 3 2 1 5 5 C 1.50707 * 109.47324 * 184.10720 * 3 2 1 6 6 H 1.07998 * 120.00283 * 240.00388 * 5 3 2 7 7 C 1.37874 * 119.99822 * 59.99763 * 5 3 2 8 8 N 1.31518 * 120.00169 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99984 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47449 * 90.00219 * 9 7 5 11 11 H 1.48505 * 109.47130 * 210.00101 * 9 7 5 12 12 H 1.48496 * 109.47002 * 329.99524 * 9 7 5 13 13 N 1.46901 * 109.47313 * 64.10827 * 3 2 1 14 14 C 1.46898 * 111.00010 * 205.87746 * 13 3 2 15 15 H 1.09003 * 112.80115 * 23.09245 * 14 13 3 16 16 C 1.53667 * 113.61682 * 252.03104 * 14 13 3 17 17 C 1.53669 * 87.49557 * 220.35091 * 16 14 13 18 18 H 1.09000 * 116.86012 * 264.96633 * 17 16 14 19 19 C 1.54539 * 113.68220 * 125.90651 * 17 16 14 20 20 C 1.51052 * 104.90695 * 292.23032 * 19 17 16 21 21 C 1.30895 * 111.21507 * 344.66937 * 20 19 17 22 22 C 1.50982 * 111.01934 * 358.90676 * 21 20 19 23 23 H 1.08995 * 115.45555 * 247.66125 * 22 21 20 24 24 H 1.09001 * 109.47520 * 54.83575 * 1 2 3 25 25 H 1.09001 * 109.47694 * 174.83704 * 1 2 3 26 26 H 1.09001 * 109.47169 * 294.83720 * 1 2 3 27 27 H 1.09001 * 109.47081 * 239.99854 * 2 1 3 28 28 H 1.08997 * 109.47042 * 120.00198 * 2 1 3 29 29 H 0.96995 * 120.00106 * 179.97438 * 8 7 5 30 30 H 1.00895 * 111.00050 * 81.92299 * 13 3 2 31 31 H 1.09000 * 113.54700 * 335.01247 * 16 14 13 32 32 H 1.09008 * 113.54428 * 105.69611 * 16 14 13 33 33 H 1.09000 * 110.35193 * 51.08673 * 19 17 16 34 34 H 1.08994 * 110.35248 * 173.26524 * 19 17 16 35 35 H 1.07994 * 124.42509 * 163.92531 * 20 19 17 36 36 H 1.07998 * 124.60399 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6178 1.9771 -0.8509 5 6 3.5436 1.4437 -0.1018 6 1 4.1374 1.8922 0.6808 7 6 4.1610 0.8720 -1.1940 8 7 3.4379 0.3261 -2.1472 9 14 6.0248 0.8729 -1.3198 10 1 6.5645 -0.3558 -0.6841 11 1 6.4244 0.9069 -2.7497 12 1 6.5671 2.0685 -0.6259 13 7 1.6330 2.1057 1.2460 14 6 1.5366 3.5598 1.0610 15 1 1.3815 3.8439 0.0202 16 6 2.6642 4.3441 1.7500 17 6 1.6046 5.3810 2.1542 18 1 1.4883 6.2464 1.5016 19 6 1.5680 5.6722 3.6715 20 6 1.0645 4.3944 4.3003 21 6 0.5276 3.6052 3.4046 22 6 0.5609 4.2391 2.0347 23 1 -0.4099 4.5116 1.6208 24 1 -0.3634 0.5918 -0.8401 25 1 -0.3634 -1.0235 -0.0925 26 1 -0.3633 0.4317 0.9326 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.8723 -0.0757 -2.9158 30 1 2.2641 1.8781 1.9996 31 1 3.1052 3.8190 2.5973 32 1 3.4111 4.7320 1.0573 33 1 2.5680 5.9061 4.0368 34 1 0.8856 6.4953 3.8832 35 1 1.1480 4.1566 5.3504 36 1 0.0994 2.6371 3.6181 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227199736.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:31 Heat of formation + Delta-G solvation = 32.802507 kcal Electronic energy + Delta-G solvation = -15496.142961 eV Core-core repulsion = 13173.763708 eV Total energy + Delta-G solvation = -2322.379253 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.32538 -35.71667 -32.90934 -31.57057 -29.96050 -28.09765 -25.95705 -24.59411 -22.82344 -21.48507 -19.67791 -18.78506 -17.72757 -16.45095 -15.91405 -14.93776 -14.60538 -14.07318 -13.62270 -12.89490 -12.66301 -12.29356 -12.17078 -11.55989 -11.49996 -11.23177 -11.18333 -10.93994 -10.81828 -10.62547 -10.59940 -10.24141 -10.15741 -9.87751 -9.55894 -9.17515 -9.02106 -8.47198 -8.33306 -7.15500 -5.96554 -4.09234 2.60617 3.27725 3.35012 3.37639 4.41362 4.70919 4.94207 5.13764 5.27361 5.39556 5.47089 5.64413 5.81229 5.86283 5.98810 6.03183 6.18024 6.25715 6.33995 6.43578 6.52424 6.54135 6.73082 6.79048 6.82296 6.91935 7.17764 7.20844 7.26637 7.49065 7.63657 7.81270 8.13957 8.21635 8.40261 8.72229 9.04934 9.58356 11.03266 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.029327 B = 0.008842 C = 0.007322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.517322 B = 3165.768916 C = 3823.169862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.107 4.107 3 C 0.214 3.786 4 H 0.031 0.969 5 C -0.540 4.540 6 H 0.053 0.947 7 C 0.066 3.934 8 N -0.886 5.886 9 Si 0.887 3.113 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.675 5.675 14 C 0.100 3.900 15 H 0.088 0.912 16 C -0.147 4.147 17 C -0.126 4.126 18 H 0.098 0.902 19 C -0.084 4.084 20 C -0.197 4.197 21 C -0.107 4.107 22 C -0.091 4.091 23 H 0.083 0.917 24 H 0.036 0.964 25 H 0.023 0.977 26 H 0.046 0.954 27 H 0.089 0.911 28 H 0.029 0.971 29 H 0.260 0.740 30 H 0.330 0.670 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.116 0.884 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.203 7.011 8.036 11.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.146 4.146 3 C 0.106 3.894 4 H 0.049 0.951 5 C -0.579 4.579 6 H 0.072 0.928 7 C -0.136 4.136 8 N -0.525 5.525 9 Si 0.715 3.285 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.201 1.201 13 N -0.302 5.302 14 C -0.012 4.012 15 H 0.106 0.894 16 C -0.186 4.186 17 C -0.144 4.144 18 H 0.116 0.884 19 C -0.121 4.121 20 C -0.215 4.215 21 C -0.125 4.125 22 C -0.110 4.110 23 H 0.101 0.899 24 H 0.055 0.945 25 H 0.042 0.958 26 H 0.065 0.935 27 H 0.107 0.893 28 H 0.048 0.952 29 H 0.070 0.930 30 H 0.147 0.853 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.134 0.866 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.863 6.780 7.728 11.373 hybrid contribution 2.080 0.159 -0.161 2.093 sum -2.783 6.940 7.567 10.638 Atomic orbital electron populations 1.21680 0.99032 0.98151 1.00372 1.21504 0.92047 0.99430 1.01576 1.19225 0.92650 0.91121 0.86374 0.95123 1.21896 0.92737 1.37547 1.05756 0.92840 1.24936 0.97802 0.95122 0.95740 1.69879 1.34788 1.38228 1.09592 0.86688 0.86347 0.78349 0.77146 1.20727 1.21271 1.20106 1.60740 1.54691 1.05351 1.09426 1.22675 0.92661 0.88976 0.96904 0.89430 1.23470 0.97224 0.97456 1.00444 1.23382 0.98541 0.96882 0.95640 0.88409 1.21145 1.00203 0.96208 0.94583 1.23228 1.02710 0.96856 0.98674 1.22910 0.97719 0.98211 0.93667 1.22524 0.97791 0.95583 0.95087 0.89920 0.94504 0.95807 0.93473 0.89282 0.95213 0.92965 0.85269 0.90438 0.91940 0.91921 0.91707 0.86561 0.85818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 9.73 37.16 0.36 -2.44 16 2 C -0.11 -2.57 5.44 -26.74 -0.15 -2.71 16 3 C 0.21 5.23 1.98 -68.87 -0.14 5.10 16 4 H 0.03 0.83 7.44 -51.93 -0.39 0.45 16 5 C -0.54 -14.40 8.49 -34.44 -0.29 -14.70 16 6 H 0.05 1.43 7.73 -52.49 -0.41 1.02 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 8 N -0.89 -25.04 11.30 55.43 0.63 -24.41 16 9 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.67 -13.89 5.22 -100.23 -0.52 -14.41 16 14 C 0.10 1.84 3.93 -67.02 -0.26 1.58 16 15 H 0.09 1.75 7.45 -51.93 -0.39 1.36 16 16 C -0.15 -2.49 6.92 -26.04 -0.18 -2.67 16 17 C -0.13 -1.80 5.23 -88.32 -0.46 -2.27 16 18 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 19 C -0.08 -1.08 6.40 -26.90 -0.17 -1.25 16 20 C -0.20 -2.63 10.38 -35.83 -0.37 -3.01 16 21 C -0.11 -1.58 9.19 -35.86 -0.33 -1.91 16 22 C -0.09 -1.41 4.94 -90.14 -0.44 -1.86 16 23 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 24 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.93 7.87 -51.93 -0.41 0.52 16 27 H 0.09 2.39 5.97 -51.93 -0.31 2.08 16 28 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.33 6.88 7.78 -39.29 -0.31 6.58 16 31 H 0.08 1.36 7.27 -51.93 -0.38 0.98 16 32 H 0.06 1.11 8.14 -51.92 -0.42 0.68 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 36 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 LS Contribution 286.37 15.07 4.32 4.32 Total: -1.00 -26.85 286.37 -9.08 -35.93 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -5.94 Total: 6.83 kcal Atomic # 6 Polarization: -21.89 SS G_CDS: -2.53 Total: -24.42 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 0.10 Total: -38.82 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -26.85 -9.08 -35.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227199736.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.730 kcal (2) G-P(sol) polarization free energy of solvation -26.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds