Wall clock time and date at job start Mon Mar 30 2020 02:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52991 * 109.47158 * 2 1 4 4 H 1.09000 * 109.47379 * 304.10855 * 3 2 1 5 5 C 1.50707 * 109.47324 * 184.10720 * 3 2 1 6 6 H 1.07998 * 120.00283 * 240.00388 * 5 3 2 7 7 C 1.37874 * 119.99822 * 59.99763 * 5 3 2 8 8 N 1.31518 * 120.00169 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99984 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47449 * 90.00219 * 9 7 5 11 11 H 1.48505 * 109.47130 * 210.00101 * 9 7 5 12 12 H 1.48496 * 109.47002 * 329.99524 * 9 7 5 13 13 N 1.46901 * 109.47313 * 64.10827 * 3 2 1 14 14 C 1.46898 * 111.00010 * 205.87746 * 13 3 2 15 15 H 1.09003 * 112.80115 * 23.09245 * 14 13 3 16 16 C 1.53667 * 113.61682 * 252.03104 * 14 13 3 17 17 C 1.53669 * 87.49557 * 220.35091 * 16 14 13 18 18 H 1.09000 * 116.86012 * 264.96633 * 17 16 14 19 19 C 1.54539 * 113.68220 * 125.90651 * 17 16 14 20 20 C 1.51052 * 104.90695 * 292.23032 * 19 17 16 21 21 C 1.30895 * 111.21507 * 344.66937 * 20 19 17 22 22 C 1.50982 * 111.01934 * 358.90676 * 21 20 19 23 23 H 1.08995 * 115.45555 * 247.66125 * 22 21 20 24 24 H 1.09001 * 109.47520 * 54.83575 * 1 2 3 25 25 H 1.09001 * 109.47694 * 174.83704 * 1 2 3 26 26 H 1.09001 * 109.47169 * 294.83720 * 1 2 3 27 27 H 1.09001 * 109.47081 * 239.99854 * 2 1 3 28 28 H 1.08997 * 109.47042 * 120.00198 * 2 1 3 29 29 H 0.96995 * 120.00106 * 179.97438 * 8 7 5 30 30 H 1.00895 * 111.00050 * 81.92299 * 13 3 2 31 31 H 1.09000 * 113.54700 * 335.01247 * 16 14 13 32 32 H 1.09008 * 113.54428 * 105.69611 * 16 14 13 33 33 H 1.09000 * 110.35193 * 51.08673 * 19 17 16 34 34 H 1.08994 * 110.35248 * 173.26524 * 19 17 16 35 35 H 1.07994 * 124.42509 * 163.92531 * 20 19 17 36 36 H 1.07998 * 124.60399 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6178 1.9771 -0.8509 5 6 3.5436 1.4437 -0.1018 6 1 4.1374 1.8922 0.6808 7 6 4.1610 0.8720 -1.1940 8 7 3.4379 0.3261 -2.1472 9 14 6.0248 0.8729 -1.3198 10 1 6.5645 -0.3558 -0.6841 11 1 6.4244 0.9069 -2.7497 12 1 6.5671 2.0685 -0.6259 13 7 1.6330 2.1057 1.2460 14 6 1.5366 3.5598 1.0610 15 1 1.3815 3.8439 0.0202 16 6 2.6642 4.3441 1.7500 17 6 1.6046 5.3810 2.1542 18 1 1.4883 6.2464 1.5016 19 6 1.5680 5.6722 3.6715 20 6 1.0645 4.3944 4.3003 21 6 0.5276 3.6052 3.4046 22 6 0.5609 4.2391 2.0347 23 1 -0.4099 4.5116 1.6208 24 1 -0.3634 0.5918 -0.8401 25 1 -0.3634 -1.0235 -0.0925 26 1 -0.3633 0.4317 0.9326 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.8723 -0.0757 -2.9158 30 1 2.2641 1.8781 1.9996 31 1 3.1052 3.8190 2.5973 32 1 3.4111 4.7320 1.0573 33 1 2.5680 5.9061 4.0368 34 1 0.8856 6.4953 3.8832 35 1 1.1480 4.1566 5.3504 36 1 0.0994 2.6371 3.6181 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227199736.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:30 Heat of formation + Delta-G solvation = 18.707288 kcal Electronic energy + Delta-G solvation = -15496.754176 eV Core-core repulsion = 13173.763708 eV Total energy + Delta-G solvation = -2322.990468 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.59249 -37.52118 -34.51234 -33.41297 -31.51753 -29.37797 -27.83028 -25.88969 -24.67292 -22.92497 -21.50029 -20.06331 -19.03374 -18.43198 -17.19555 -16.69570 -16.08562 -15.64437 -15.27761 -14.67315 -14.13526 -13.86207 -13.57907 -13.17533 -13.10840 -13.04402 -12.70213 -12.62362 -12.41151 -12.21977 -11.92702 -11.87999 -11.59681 -11.51302 -11.44445 -10.95357 -10.69889 -10.44457 -9.61462 -8.89610 -8.02502 -6.25118 1.36995 1.38723 1.47309 1.51457 2.40284 3.15775 3.51434 3.66170 3.88659 3.93413 4.37425 4.40020 4.45543 4.57557 4.62919 4.76569 4.83442 4.90833 4.94342 4.97579 5.03327 5.13158 5.20425 5.26239 5.41451 5.45745 5.54998 5.59581 5.66408 5.76114 5.80569 6.13389 6.17554 6.24965 6.48105 6.88411 7.07356 7.46493 8.92844 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.029327 B = 0.008842 C = 0.007322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.517322 B = 3165.768916 C = 3823.169862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.103 4.103 3 C 0.222 3.778 4 H -0.004 1.004 5 C -0.551 4.551 6 H 0.050 0.950 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.947 3.053 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.272 1.272 13 N -0.663 5.663 14 C 0.083 3.917 15 H 0.064 0.936 16 C -0.145 4.145 17 C -0.113 4.113 18 H 0.113 0.887 19 C -0.083 4.083 20 C -0.179 4.179 21 C -0.133 4.133 22 C -0.083 4.083 23 H 0.086 0.914 24 H 0.028 0.972 25 H 0.042 0.958 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.027 0.973 29 H 0.261 0.739 30 H 0.329 0.671 31 H 0.074 0.926 32 H 0.048 0.952 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.137 0.863 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.125 8.061 9.745 13.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.142 4.142 3 C 0.113 3.887 4 H 0.014 0.986 5 C -0.590 4.590 6 H 0.068 0.932 7 C -0.182 4.182 8 N -0.552 5.552 9 Si 0.774 3.226 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.197 1.197 13 N -0.290 5.290 14 C -0.028 4.028 15 H 0.082 0.918 16 C -0.184 4.184 17 C -0.132 4.132 18 H 0.131 0.869 19 C -0.120 4.120 20 C -0.196 4.196 21 C -0.151 4.151 22 C -0.102 4.102 23 H 0.104 0.896 24 H 0.048 0.952 25 H 0.061 0.939 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.045 0.955 29 H 0.070 0.930 30 H 0.146 0.854 31 H 0.092 0.908 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.105 0.895 35 H 0.155 0.845 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -4.792 7.845 9.451 13.184 hybrid contribution 2.051 -0.138 -0.686 2.167 sum -2.741 7.707 8.765 11.989 Atomic orbital electron populations 1.21531 0.96434 0.99384 1.00600 1.21368 0.94361 0.98608 0.99872 1.18983 0.91450 0.91377 0.86859 0.98592 1.22180 0.94017 1.37180 1.05628 0.93217 1.25661 1.01924 0.94992 0.95582 1.70011 1.36324 1.38883 1.10001 0.85725 0.81416 0.78401 0.77080 1.20231 1.21037 1.19714 1.60712 1.54076 1.06741 1.07510 1.22802 0.95434 0.87861 0.96752 0.91793 1.23381 0.96966 0.98273 0.99795 1.23356 0.95905 0.96413 0.97477 0.86904 1.21192 1.01389 0.96606 0.92783 1.23514 1.00283 0.96374 0.99470 1.22860 1.00030 0.98836 0.93424 1.22450 0.97623 0.95480 0.94662 0.89558 0.95234 0.93856 0.92366 0.92266 0.95463 0.93013 0.85373 0.90788 0.93300 0.90880 0.89466 0.84486 0.86202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.02 9.73 71.98 0.70 -4.32 16 2 C -0.10 -5.04 5.44 30.59 0.17 -4.88 16 3 C 0.22 11.16 1.98 44.17 0.09 11.25 16 4 H 0.00 -0.22 7.44 -2.39 -0.02 -0.24 16 5 C -0.55 -29.93 8.49 25.60 0.22 -29.71 16 6 H 0.05 2.68 7.73 -2.91 -0.02 2.66 16 7 C 0.02 1.00 5.29 84.65 0.45 1.44 16 8 N -0.91 -52.74 11.30 21.45 0.24 -52.49 16 9 Si 0.95 43.83 29.54 68.60 2.03 45.86 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 12 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 13 N -0.66 -27.62 5.22 -471.01 -2.46 -30.08 16 14 C 0.08 3.09 3.93 45.37 0.18 3.26 16 15 H 0.06 2.66 7.45 -2.39 -0.02 2.64 16 16 C -0.14 -4.84 6.92 31.04 0.21 -4.62 16 17 C -0.11 -2.99 5.23 -9.30 -0.05 -3.04 16 18 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 19 C -0.08 -1.82 6.40 30.48 0.20 -1.63 16 20 C -0.18 -4.20 10.38 25.86 0.27 -3.93 16 21 C -0.13 -3.69 9.19 25.84 0.24 -3.45 16 22 C -0.08 -2.48 4.94 -10.48 -0.05 -2.53 16 23 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 24 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.06 2.24 7.87 -2.39 -0.02 2.23 16 27 H 0.06 3.26 5.97 -2.39 -0.01 3.24 16 28 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 30 H 0.33 13.77 7.78 -89.70 -0.70 13.08 16 31 H 0.07 2.51 7.27 -2.39 -0.02 2.50 16 32 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 33 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.14 2.67 8.06 -2.91 -0.02 2.65 16 36 H 0.12 3.38 8.06 -2.91 -0.02 3.36 16 Total: -1.00 -57.68 286.37 2.76 -54.91 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: 0.34 Total: 23.96 kcal Atomic # 6 Polarization: -44.77 SS G_CDS: 2.61 Total: -42.16 kcal Atomic # 7 Polarization: -80.36 SS G_CDS: -2.22 Total: -82.58 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -57.68 2.76 -54.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227199736.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.622 kcal (2) G-P(sol) polarization free energy of solvation -57.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds