Wall clock time and date at job start Mon Mar 30 2020 02:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 H 1.09002 * 109.47219 * 241.62478 * 3 2 1 5 5 C 1.53002 * 109.47257 * 1.62602 * 3 2 1 6 6 C 1.52994 * 109.47111 * 184.99944 * 5 3 2 7 7 C 1.53002 * 109.47111 * 179.97438 * 6 5 3 8 8 N 1.46905 * 109.47100 * 121.62756 * 3 2 1 9 9 C 1.46897 * 110.99870 * 84.99957 * 8 3 2 10 10 C 1.53002 * 109.47064 * 174.70735 * 9 8 3 11 11 C 1.50704 * 115.54677 * 39.57645 * 10 9 8 12 12 H 1.08000 * 119.99763 * 265.27101 * 11 10 9 13 13 C 1.37879 * 119.99999 * 85.27226 * 11 10 9 14 14 N 1.31511 * 120.00139 * 353.37674 * 13 11 10 15 15 Si 1.86802 * 119.99716 * 173.37421 * 13 11 10 16 16 H 1.48492 * 109.47323 * 60.00113 * 15 13 11 17 17 H 1.48504 * 109.46812 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46901 * 299.99816 * 15 13 11 19 19 C 1.52992 * 117.50374 * 253.86701 * 10 9 8 20 20 C 1.52995 * 60.00173 * 252.51262 * 19 10 9 21 21 H 4.18740 * 15.03864 * 359.97438 * 4 2 1 22 22 H 1.09000 * 109.46704 * 65.00067 * 5 3 2 23 23 H 1.09002 * 109.47204 * 305.00385 * 5 3 2 24 24 H 1.08998 * 109.47586 * 299.99790 * 6 5 3 25 25 H 1.09000 * 109.47236 * 60.00449 * 6 5 3 26 26 H 1.08997 * 109.47514 * 180.02562 * 7 6 5 27 27 H 1.09002 * 109.47204 * 300.00441 * 7 6 5 28 28 H 1.09005 * 109.47156 * 60.00053 * 7 6 5 29 29 H 1.00900 * 110.99979 * 321.04084 * 8 3 2 30 30 H 1.08994 * 109.47042 * 294.71062 * 9 8 3 31 31 H 1.09006 * 109.47224 * 54.71258 * 9 8 3 32 32 H 0.97003 * 119.99969 * 185.06294 * 14 13 11 33 33 H 1.09007 * 117.49892 * 359.97438 * 19 10 9 34 34 H 1.09001 * 117.50361 * 145.01534 * 19 10 9 35 35 H 1.09005 * 117.49421 * 252.51144 * 20 19 10 36 36 H 1.08998 * 117.52224 * 107.47811 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0091 0.4892 0.9042 5 6 3.1566 -1.4410 -0.0409 6 6 4.6814 -1.4457 0.0847 7 6 5.1920 -2.8875 0.0444 8 7 3.1353 0.7272 -1.1793 9 6 3.1974 2.1716 -0.9194 10 6 3.8332 2.8787 -2.1181 11 6 3.4272 2.3551 -3.4717 12 1 4.0372 1.6162 -3.9701 13 6 2.2771 2.8195 -4.0739 14 7 1.4667 3.6190 -3.4154 15 14 1.8700 2.3131 -5.8253 16 1 1.7404 0.8355 -5.8959 17 1 0.5900 2.9431 -6.2378 18 1 2.9562 2.7588 -6.7346 19 6 5.2665 3.3893 -1.9586 20 6 4.1009 4.3798 -1.9925 21 1 -1.0500 0.0002 -0.0007 22 1 2.8685 -1.9018 -0.9858 23 1 2.7222 -2.0040 0.7852 24 1 5.1158 -0.8829 -0.7415 25 1 4.9696 -0.9850 1.0295 26 1 6.2783 -2.8909 0.1343 27 1 4.7576 -3.4500 0.8708 28 1 4.9039 -3.3487 -0.9003 29 1 2.5653 0.5294 -1.9881 30 1 2.1897 2.5563 -0.7632 31 1 3.7985 2.3551 -0.0288 32 1 0.6224 3.8868 -3.8108 33 1 5.7566 3.2220 -0.9994 34 1 5.9163 3.3466 -2.8326 35 1 3.9838 4.9887 -2.8890 36 1 3.8238 4.8637 -1.0560 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229980633.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:41 Heat of formation + Delta-G solvation = 60.385560 kcal Electronic energy + Delta-G solvation = -15091.079270 eV Core-core repulsion = 12769.896108 eV Total energy + Delta-G solvation = -2321.183162 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -37.55342 -36.03472 -33.27565 -31.89381 -31.59962 -28.46580 -25.52498 -24.35196 -22.73199 -20.97750 -20.62962 -19.05265 -17.79434 -15.98131 -15.08988 -14.85967 -14.58721 -14.09095 -13.73550 -13.49549 -13.09458 -12.49596 -12.17217 -11.60434 -11.49122 -11.32171 -11.13770 -10.92606 -10.80725 -10.67937 -10.44733 -10.26743 -10.14923 -10.00447 -9.70725 -9.32771 -8.77470 -8.41526 -8.06812 -7.45941 -5.98950 -4.03779 3.24468 3.26272 3.32024 3.37141 3.40211 4.42696 4.70484 5.03009 5.29690 5.33034 5.41026 5.44315 5.54429 5.70517 5.96813 6.03512 6.12877 6.17387 6.21824 6.35136 6.40734 6.46910 6.60165 6.61587 6.77279 6.83412 6.86087 7.00683 7.18121 7.46829 7.55499 7.92067 8.03284 8.06664 8.37031 8.56238 8.98965 9.60455 11.08903 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.021235 B = 0.008842 C = 0.008173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.253797 B = 3165.890164 C = 3424.921801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.200 4.200 3 C 0.185 3.815 4 H 0.086 0.914 5 C -0.096 4.096 6 C -0.117 4.117 7 C -0.151 4.151 8 N -0.654 5.654 9 C 0.104 3.896 10 C 0.053 3.947 11 C -0.485 4.485 12 H 0.061 0.939 13 C 0.069 3.931 14 N -0.880 5.880 15 Si 0.886 3.114 16 H -0.277 1.277 17 H -0.289 1.289 18 H -0.277 1.277 19 C -0.207 4.207 20 C -0.164 4.164 21 H 0.210 0.790 22 H 0.064 0.936 23 H 0.056 0.944 24 H 0.084 0.916 25 H 0.053 0.947 26 H 0.049 0.951 27 H 0.045 0.955 28 H 0.052 0.948 29 H 0.358 0.642 30 H 0.030 0.970 31 H 0.038 0.962 32 H 0.259 0.741 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.010 -7.631 6.639 10.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.202 4.202 3 C 0.075 3.925 4 H 0.104 0.896 5 C -0.135 4.135 6 C -0.155 4.155 7 C -0.208 4.208 8 N -0.285 5.285 9 C -0.025 4.025 10 C 0.052 3.948 11 C -0.523 4.523 12 H 0.079 0.921 13 C -0.134 4.134 14 N -0.517 5.517 15 Si 0.714 3.286 16 H -0.202 1.202 17 H -0.215 1.215 18 H -0.203 1.203 19 C -0.244 4.244 20 C -0.202 4.202 21 H 0.227 0.773 22 H 0.082 0.918 23 H 0.074 0.926 24 H 0.102 0.898 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.179 0.821 30 H 0.048 0.952 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.561 -7.566 6.722 10.440 hybrid contribution -1.649 0.169 -0.969 1.920 sum 0.912 -7.397 5.753 9.415 Atomic orbital electron populations 1.24851 0.95922 1.01593 1.01374 1.24704 0.95918 0.99606 0.99947 1.18935 0.81167 0.95997 0.96411 0.89580 1.21489 0.96000 0.94377 1.01593 1.21421 0.95064 0.96254 1.02721 1.21783 1.00416 0.97378 1.01221 1.60804 1.55144 1.08726 1.03776 1.21450 0.98288 0.86441 0.96302 1.18747 0.90867 0.91125 0.94059 1.20363 1.08411 1.23347 1.00213 0.92052 1.25004 0.96595 0.94561 0.97258 1.69988 1.09768 1.34392 1.37587 0.86753 0.77463 0.78755 0.85606 1.20208 1.21529 1.20281 1.22990 0.93180 1.08663 0.99568 1.22523 1.02692 0.95064 0.99931 0.77331 0.91754 0.92574 0.89778 0.92814 0.93148 0.93548 0.92933 0.82066 0.95199 0.94358 0.93141 0.91871 0.90765 0.90287 0.92238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.67 19.25 29.55 0.57 -3.10 16 2 C -0.20 -3.62 12.41 -37.13 -0.46 -4.08 16 3 C 0.19 3.18 2.44 -70.50 -0.17 3.01 16 4 H 0.09 1.43 7.72 -51.93 -0.40 1.02 16 5 C -0.10 -1.40 4.85 -26.73 -0.13 -1.53 16 6 C -0.12 -1.59 5.82 -26.73 -0.16 -1.74 16 7 C -0.15 -1.73 9.91 37.16 0.37 -1.36 16 8 N -0.65 -13.25 5.45 -109.71 -0.60 -13.85 16 9 C 0.10 2.34 5.62 -3.82 -0.02 2.31 16 10 C 0.05 1.29 1.76 -155.66 -0.27 1.01 16 11 C -0.49 -12.89 7.47 -34.44 -0.26 -13.15 16 12 H 0.06 1.65 7.82 -52.49 -0.41 1.24 16 13 C 0.07 1.85 5.39 -17.82 -0.10 1.76 16 14 N -0.88 -24.77 12.93 55.43 0.72 -24.05 16 15 Si 0.89 21.05 29.55 -169.99 -5.02 16.02 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 19 C -0.21 -4.59 9.88 -26.74 -0.26 -4.85 16 20 C -0.16 -3.91 9.46 -26.73 -0.25 -4.17 16 21 H 0.21 2.74 7.80 -54.09 -0.42 2.32 16 22 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 23 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 24 H 0.08 1.32 7.75 -51.93 -0.40 0.91 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.36 8.08 7.44 -39.29 -0.29 7.79 16 30 H 0.03 0.75 8.07 -51.93 -0.42 0.33 16 31 H 0.04 0.79 7.73 -51.93 -0.40 0.39 16 32 H 0.26 7.06 8.32 -40.82 -0.34 6.72 16 33 H 0.06 1.27 8.08 -51.92 -0.42 0.85 16 34 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 35 H 0.08 2.01 8.14 -51.93 -0.42 1.59 16 36 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 307.50 15.07 4.63 4.63 Total: -1.00 -27.57 307.50 -7.52 -35.10 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -6.11 Total: 8.04 kcal Atomic # 6 Polarization: -24.74 SS G_CDS: -1.15 Total: -25.89 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: 0.12 Total: -37.90 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -27.57 -7.52 -35.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229980633.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.481 kcal (2) G-P(sol) polarization free energy of solvation -27.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds