Wall clock time and date at job start Mon Mar 30 2020 02:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 H 1.09002 * 109.47219 * 241.62478 * 3 2 1 5 5 C 1.53002 * 109.47257 * 1.62602 * 3 2 1 6 6 C 1.52994 * 109.47111 * 184.99944 * 5 3 2 7 7 C 1.53002 * 109.47111 * 179.97438 * 6 5 3 8 8 N 1.46905 * 109.47100 * 121.62756 * 3 2 1 9 9 C 1.46897 * 110.99870 * 84.99957 * 8 3 2 10 10 C 1.53002 * 109.47064 * 174.70735 * 9 8 3 11 11 C 1.50704 * 115.54677 * 39.57645 * 10 9 8 12 12 H 1.08000 * 119.99763 * 265.27101 * 11 10 9 13 13 C 1.37879 * 119.99999 * 85.27226 * 11 10 9 14 14 N 1.31511 * 120.00139 * 353.37674 * 13 11 10 15 15 Si 1.86802 * 119.99716 * 173.37421 * 13 11 10 16 16 H 1.48492 * 109.47323 * 60.00113 * 15 13 11 17 17 H 1.48504 * 109.46812 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46901 * 299.99816 * 15 13 11 19 19 C 1.52992 * 117.50374 * 253.86701 * 10 9 8 20 20 C 1.52995 * 60.00173 * 252.51262 * 19 10 9 21 21 H 4.18740 * 15.03864 * 359.97438 * 4 2 1 22 22 H 1.09000 * 109.46704 * 65.00067 * 5 3 2 23 23 H 1.09002 * 109.47204 * 305.00385 * 5 3 2 24 24 H 1.08998 * 109.47586 * 299.99790 * 6 5 3 25 25 H 1.09000 * 109.47236 * 60.00449 * 6 5 3 26 26 H 1.08997 * 109.47514 * 180.02562 * 7 6 5 27 27 H 1.09002 * 109.47204 * 300.00441 * 7 6 5 28 28 H 1.09005 * 109.47156 * 60.00053 * 7 6 5 29 29 H 1.00900 * 110.99979 * 321.04084 * 8 3 2 30 30 H 1.08994 * 109.47042 * 294.71062 * 9 8 3 31 31 H 1.09006 * 109.47224 * 54.71258 * 9 8 3 32 32 H 0.97003 * 119.99969 * 185.06294 * 14 13 11 33 33 H 1.09007 * 117.49892 * 359.97438 * 19 10 9 34 34 H 1.09001 * 117.50361 * 145.01534 * 19 10 9 35 35 H 1.09005 * 117.49421 * 252.51144 * 20 19 10 36 36 H 1.08998 * 117.52224 * 107.47811 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0091 0.4892 0.9042 5 6 3.1566 -1.4410 -0.0409 6 6 4.6814 -1.4457 0.0847 7 6 5.1920 -2.8875 0.0444 8 7 3.1353 0.7272 -1.1793 9 6 3.1974 2.1716 -0.9194 10 6 3.8332 2.8787 -2.1181 11 6 3.4272 2.3551 -3.4717 12 1 4.0372 1.6162 -3.9701 13 6 2.2771 2.8195 -4.0739 14 7 1.4667 3.6190 -3.4154 15 14 1.8700 2.3131 -5.8253 16 1 1.7404 0.8355 -5.8959 17 1 0.5900 2.9431 -6.2378 18 1 2.9562 2.7588 -6.7346 19 6 5.2665 3.3893 -1.9586 20 6 4.1009 4.3798 -1.9925 21 1 -1.0500 0.0002 -0.0007 22 1 2.8685 -1.9018 -0.9858 23 1 2.7222 -2.0040 0.7852 24 1 5.1158 -0.8829 -0.7415 25 1 4.9696 -0.9850 1.0295 26 1 6.2783 -2.8909 0.1343 27 1 4.7576 -3.4500 0.8708 28 1 4.9039 -3.3487 -0.9003 29 1 2.5653 0.5294 -1.9881 30 1 2.1897 2.5563 -0.7632 31 1 3.7985 2.3551 -0.0288 32 1 0.6224 3.8868 -3.8108 33 1 5.7566 3.2220 -0.9994 34 1 5.9163 3.3466 -2.8326 35 1 3.9838 4.9887 -2.8890 36 1 3.8238 4.8637 -1.0560 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229980633.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:40 Heat of formation + Delta-G solvation = 45.943620 kcal Electronic energy + Delta-G solvation = -15091.705520 eV Core-core repulsion = 12769.896108 eV Total energy + Delta-G solvation = -2321.809412 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.15823 -37.64330 -34.48772 -33.94943 -33.06807 -29.76162 -27.52126 -25.89504 -24.09372 -22.83479 -21.80578 -20.93568 -19.14861 -17.91257 -16.61686 -16.40534 -16.32721 -15.70802 -15.14406 -14.92373 -14.53520 -14.17324 -13.62968 -13.23348 -12.95571 -12.86615 -12.80445 -12.60540 -12.36534 -12.33087 -11.97918 -11.77410 -11.46507 -11.36587 -11.23693 -10.94572 -10.75553 -10.38536 -9.92669 -9.14436 -8.05568 -6.14696 1.42190 1.43882 1.50151 1.87182 1.90391 2.44536 3.21701 3.40385 3.48261 3.72535 4.16535 4.29001 4.37613 4.40624 4.54740 4.62464 4.77378 4.85211 4.89134 5.00515 5.03894 5.05785 5.07499 5.15842 5.23024 5.29461 5.38251 5.52207 5.63588 5.67581 5.70883 5.81693 6.35827 6.54549 6.64032 6.70800 6.92526 7.51755 9.01463 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.021235 B = 0.008842 C = 0.008173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.253797 B = 3165.890164 C = 3424.921801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.239 4.239 3 C 0.184 3.816 4 H 0.093 0.907 5 C -0.088 4.088 6 C -0.114 4.114 7 C -0.147 4.147 8 N -0.650 5.650 9 C 0.119 3.881 10 C 0.026 3.974 11 C -0.490 4.490 12 H 0.053 0.947 13 C 0.026 3.974 14 N -0.908 5.908 15 Si 0.942 3.058 16 H -0.270 1.270 17 H -0.290 1.290 18 H -0.276 1.276 19 C -0.183 4.183 20 C -0.171 4.171 21 H 0.240 0.760 22 H 0.054 0.946 23 H 0.075 0.925 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.049 0.951 29 H 0.342 0.658 30 H -0.004 1.004 31 H 0.055 0.945 32 H 0.256 0.744 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.055 0.945 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.405 -8.821 7.269 11.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.241 4.241 3 C 0.074 3.926 4 H 0.110 0.890 5 C -0.126 4.126 6 C -0.151 4.151 7 C -0.204 4.204 8 N -0.279 5.279 9 C -0.011 4.011 10 C 0.025 3.975 11 C -0.528 4.528 12 H 0.071 0.929 13 C -0.174 4.174 14 N -0.547 5.547 15 Si 0.768 3.232 16 H -0.195 1.195 17 H -0.216 1.216 18 H -0.201 1.201 19 C -0.220 4.220 20 C -0.209 4.209 21 H 0.257 0.743 22 H 0.073 0.927 23 H 0.093 0.907 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.161 0.839 30 H 0.014 0.986 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.108 0.892 34 H 0.092 0.908 35 H 0.074 0.926 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.976 -8.771 7.361 11.831 hybrid contribution -1.778 0.535 -1.127 2.172 sum 1.198 -8.235 6.234 10.398 Atomic orbital electron populations 1.25703 0.96950 1.00301 0.99840 1.25073 0.96777 1.00911 1.01356 1.19068 0.81188 0.97147 0.95166 0.88962 1.21448 0.96725 0.92611 1.01829 1.21371 0.94141 0.97509 1.02107 1.21743 1.01065 0.95908 1.01672 1.60793 1.55153 1.07552 1.04432 1.21229 0.96379 0.87438 0.96018 1.18927 0.92935 0.91537 0.94068 1.20544 1.08160 1.22847 1.01223 0.92915 1.25602 0.96644 0.94787 1.00337 1.70101 1.10017 1.35669 1.38887 0.85867 0.76994 0.78623 0.81674 1.19527 1.21617 1.20137 1.22987 0.92082 1.06031 1.00860 1.22435 1.04348 0.94769 0.99365 0.74328 0.92707 0.90693 0.92167 0.92003 0.92221 0.92136 0.93232 0.83854 0.98555 0.92621 0.93483 0.89224 0.90826 0.92643 0.91226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -6.76 19.25 74.32 1.43 -5.33 16 2 C -0.24 -8.49 12.41 31.12 0.39 -8.10 16 3 C 0.18 6.18 2.44 43.11 0.11 6.28 16 4 H 0.09 2.95 7.72 -2.39 -0.02 2.93 16 5 C -0.09 -2.43 4.85 30.59 0.15 -2.29 16 6 C -0.11 -2.89 5.82 30.59 0.18 -2.72 16 7 C -0.15 -3.04 9.91 71.98 0.71 -2.32 16 8 N -0.65 -26.28 5.45 -501.00 -2.73 -29.01 16 9 C 0.12 5.31 5.62 86.30 0.48 5.79 16 10 C 0.03 1.26 1.76 -52.93 -0.09 1.17 16 11 C -0.49 -26.15 7.47 25.60 0.19 -25.95 16 12 H 0.05 2.85 7.82 -2.91 -0.02 2.82 16 13 C 0.03 1.42 5.39 84.66 0.46 1.88 16 14 N -0.91 -51.83 12.93 21.45 0.28 -51.55 16 15 Si 0.94 43.42 29.55 68.60 2.03 45.44 16 16 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 17 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 18 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 19 C -0.18 -7.84 9.88 30.59 0.30 -7.54 16 20 C -0.17 -8.14 9.46 30.59 0.29 -7.85 16 21 H 0.24 5.72 7.80 -4.42 -0.03 5.69 16 22 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 23 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 24 H 0.06 1.83 7.75 -2.39 -0.02 1.81 16 25 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.06 1.12 8.14 -2.39 -0.02 1.11 16 27 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 29 H 0.34 15.66 7.44 -89.69 -0.67 15.00 16 30 H 0.00 -0.19 8.07 -2.39 -0.02 -0.21 16 31 H 0.06 2.25 7.73 -2.38 -0.02 2.23 16 32 H 0.26 14.18 8.32 -92.71 -0.77 13.41 16 33 H 0.09 3.37 8.08 -2.38 -0.02 3.35 16 34 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 35 H 0.05 2.86 8.14 -2.38 -0.02 2.84 16 36 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 Total: -1.00 -58.37 307.50 4.52 -53.85 By element: Atomic # 1 Polarization: 27.89 SS G_CDS: 0.36 Total: 28.25 kcal Atomic # 6 Polarization: -51.56 SS G_CDS: 4.59 Total: -46.97 kcal Atomic # 7 Polarization: -78.11 SS G_CDS: -2.45 Total: -80.57 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.44 kcal Total: -58.37 4.52 -53.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229980633.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.791 kcal (2) G-P(sol) polarization free energy of solvation -58.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds