Wall clock time and date at job start Mon Mar 30 2020 03:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35031 * 1 3 3 C 1.40067 * 120.00323 * 2 1 4 4 H 1.08000 * 120.00563 * 153.49298 * 3 2 1 5 5 C 1.40311 * 119.99969 * 333.49780 * 3 2 1 6 6 N 1.30689 * 119.99781 * 339.73345 * 5 3 2 7 7 Si 1.86796 * 120.00216 * 159.72746 * 5 3 2 8 8 H 1.48506 * 109.46887 * 84.99598 * 7 5 3 9 9 H 1.48502 * 109.47376 * 204.99383 * 7 5 3 10 10 H 1.48499 * 109.47173 * 324.99760 * 7 5 3 11 11 C 1.50704 * 119.99507 * 179.97438 * 2 1 3 12 12 C 1.50699 * 109.46898 * 95.00700 * 11 2 1 13 13 C 1.38248 * 119.98293 * 269.72389 * 12 11 2 14 14 C 1.38216 * 120.01180 * 179.73119 * 13 12 11 15 15 C 1.38349 * 119.98633 * 0.53918 * 14 13 12 16 16 Cl 1.73600 * 120.01600 * 179.70813 * 15 14 13 17 17 C 1.38357 * 119.97498 * 359.73140 * 15 14 13 18 18 C 1.38213 * 119.98388 * 359.97438 * 17 15 14 19 19 H 1.08004 * 119.99839 * 354.17277 * 1 2 3 20 20 H 1.08002 * 120.00284 * 174.16615 * 1 2 3 21 21 H 0.97002 * 120.00072 * 180.02562 * 6 5 3 22 22 H 1.08994 * 109.47410 * 334.99943 * 11 2 1 23 23 H 1.08999 * 109.47019 * 214.99897 * 11 2 1 24 24 H 1.08000 * 119.99531 * 359.97438 * 13 12 11 25 25 H 1.07999 * 120.00659 * 180.27203 * 14 13 12 26 26 H 1.07997 * 120.00950 * 179.97438 * 17 15 14 27 27 H 1.08003 * 119.99411 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3503 0.0000 0.0000 3 6 2.0507 1.2130 0.0000 4 1 3.0456 1.2622 0.4174 5 6 1.4598 2.3643 -0.5422 6 7 0.4649 2.2542 -1.3825 7 14 2.0950 4.0543 -0.0630 8 1 3.2488 4.4126 -0.9265 9 1 1.0145 5.0576 -0.2394 10 1 2.5268 4.0363 1.3577 11 6 2.1037 -1.3052 0.0006 12 6 2.4622 -1.6788 -1.4146 13 6 1.5960 -2.4513 -2.1658 14 6 1.9217 -2.7897 -3.4657 15 6 3.1198 -2.3646 -4.0114 16 17 3.5330 -2.7955 -5.6415 17 6 3.9888 -1.5962 -3.2573 18 6 3.6593 -1.2534 -1.9596 19 1 -0.5400 0.9305 0.0950 20 1 -0.5401 -0.9305 -0.0951 21 1 0.0566 3.0501 -1.7577 22 1 1.4788 -2.0853 0.4352 23 1 3.0144 -1.1987 0.5900 24 1 0.6629 -2.7872 -1.7381 25 1 1.2429 -3.3895 -4.0539 26 1 4.9244 -1.2644 -3.6826 27 1 4.3377 -0.6539 -1.3707 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230513758.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:51 Heat of formation + Delta-G solvation = 18.318923 kcal Electronic energy + Delta-G solvation = -12391.459135 eV Core-core repulsion = 10139.776140 eV Total energy + Delta-G solvation = -2251.682995 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.051 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.88002 -36.25224 -34.92694 -32.32616 -30.56064 -29.60664 -25.56399 -24.80656 -22.28548 -21.01161 -18.90951 -16.64912 -15.61111 -15.03883 -14.92557 -14.63525 -13.34866 -13.13391 -13.05421 -12.86458 -12.34846 -11.80723 -11.32463 -11.23275 -10.99319 -10.85759 -10.70373 -10.44922 -10.20952 -9.81348 -9.39421 -8.85440 -8.52742 -7.94085 -7.27207 -6.45082 -4.06794 1.70064 1.81683 2.48306 3.09583 3.21022 3.25530 4.02153 4.17546 4.26836 5.24524 5.30224 5.31587 5.74563 5.83547 5.91077 6.21838 6.22480 6.52107 6.65229 6.68354 6.83068 6.85449 7.23292 7.36734 7.38524 7.59905 8.19608 8.42499 8.98091 9.23840 9.44879 10.56186 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.033473 B = 0.007701 C = 0.007034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.288145 B = 3635.025915 C = 3979.959431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.343 4.343 2 C 0.039 3.961 3 C -0.479 4.479 4 H 0.061 0.939 5 C 0.083 3.917 6 N -0.798 5.798 7 Si 0.889 3.111 8 H -0.274 1.274 9 H -0.281 1.281 10 H -0.265 1.265 11 C -0.049 4.049 12 C -0.030 4.030 13 C -0.105 4.105 14 C -0.112 4.112 15 C -0.052 4.052 16 Cl -0.094 7.094 17 C -0.112 4.112 18 C -0.097 4.097 19 H 0.083 0.917 20 H 0.041 0.959 21 H 0.271 0.729 22 H 0.057 0.943 23 H 0.062 0.938 24 H 0.126 0.874 25 H 0.124 0.876 26 H 0.124 0.876 27 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.009 -7.014 -3.698 9.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.383 4.383 2 C 0.038 3.962 3 C -0.510 4.510 4 H 0.079 0.921 5 C -0.133 4.133 6 N -0.424 5.424 7 Si 0.714 3.286 8 H -0.199 1.199 9 H -0.206 1.206 10 H -0.189 1.189 11 C -0.087 4.087 12 C -0.030 4.030 13 C -0.124 4.124 14 C -0.131 4.131 15 C -0.078 4.078 16 Cl -0.066 7.066 17 C -0.131 4.131 18 C -0.115 4.115 19 H 0.102 0.898 20 H 0.059 0.941 21 H 0.082 0.918 22 H 0.076 0.924 23 H 0.081 0.919 24 H 0.144 0.856 25 H 0.142 0.858 26 H 0.142 0.858 27 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.902 -6.931 -3.997 9.383 hybrid contribution 0.182 1.005 -0.205 1.041 sum 5.084 -5.926 -4.202 8.867 Atomic orbital electron populations 1.23209 0.94432 0.97337 1.23352 1.18183 0.93002 0.90004 0.95044 1.18983 1.01718 0.93342 1.36988 0.92102 1.25693 0.94412 1.00318 0.92897 1.69820 1.20868 1.30544 1.21180 0.86675 0.79051 0.82765 0.80127 1.19926 1.20594 1.18903 1.19835 0.99963 0.98140 0.90727 1.20070 0.92720 0.92871 0.97322 1.20969 0.99369 0.98714 0.93306 1.20887 0.95250 1.01180 0.95757 1.20738 0.97361 1.03843 0.85839 1.98317 1.93713 1.92426 1.22112 1.20927 0.99314 0.98439 0.94399 1.20992 0.97298 0.98811 0.94388 0.89834 0.94068 0.91807 0.92444 0.91913 0.85627 0.85803 0.85771 0.85268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.34 -9.22 12.92 29.59 0.38 -8.84 15 2 C 0.04 1.01 4.90 -105.07 -0.51 0.49 15 3 C -0.48 -12.88 9.01 -38.12 -0.34 -13.22 15 4 H 0.06 1.57 7.93 -52.49 -0.42 1.15 15 5 C 0.08 2.20 5.00 -17.26 -0.09 2.12 15 6 N -0.80 -22.24 11.33 55.57 0.63 -21.61 15 7 Si 0.89 19.83 29.61 -169.99 -5.03 14.80 15 8 H -0.27 -6.01 7.11 56.52 0.40 -5.61 15 9 H -0.28 -6.19 7.11 56.52 0.40 -5.79 15 10 H -0.26 -5.83 7.11 56.52 0.40 -5.43 15 11 C -0.05 -1.04 5.47 -29.03 -0.16 -1.20 15 12 C -0.03 -0.59 5.12 -104.62 -0.54 -1.12 15 13 C -0.11 -1.94 9.70 -39.59 -0.38 -2.32 15 14 C -0.11 -1.89 9.83 -39.55 -0.39 -2.28 15 15 C -0.05 -0.86 6.32 -39.50 -0.25 -1.11 15 16 Cl -0.09 -1.38 28.96 -51.86 -1.50 -2.88 15 17 C -0.11 -1.90 9.83 -39.55 -0.39 -2.29 15 18 C -0.10 -1.80 9.70 -39.59 -0.38 -2.18 15 19 H 0.08 2.43 6.49 -52.48 -0.34 2.09 15 20 H 0.04 1.03 8.06 -52.49 -0.42 0.61 15 21 H 0.27 7.02 8.29 -40.82 -0.34 6.68 15 22 H 0.06 1.11 7.98 -51.93 -0.41 0.70 15 23 H 0.06 1.23 8.07 -51.93 -0.42 0.81 15 24 H 0.13 2.17 8.06 -52.49 -0.42 1.74 15 25 H 0.12 1.79 8.06 -52.49 -0.42 1.37 15 26 H 0.12 1.82 8.06 -52.49 -0.42 1.40 15 27 H 0.13 2.28 8.06 -52.48 -0.42 1.86 15 LS Contribution 258.06 15.07 3.89 3.89 Total: -1.00 -28.28 258.06 -7.91 -36.19 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -2.84 Total: 1.58 kcal Atomic # 6 Polarization: -28.90 SS G_CDS: -3.05 Total: -31.96 kcal Atomic # 7 Polarization: -22.24 SS G_CDS: 0.63 Total: -21.61 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.03 Total: 14.80 kcal Atomic # 17 Polarization: -1.38 SS G_CDS: -1.50 Total: -2.88 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -28.28 -7.91 -36.19 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230513758.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.506 kcal (2) G-P(sol) polarization free energy of solvation -28.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds