Wall clock time and date at job start Mon Mar 30 2020 03:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35031 * 1 3 3 C 1.40067 * 120.00323 * 2 1 4 4 H 1.08000 * 120.00563 * 153.49298 * 3 2 1 5 5 C 1.40311 * 119.99969 * 333.49780 * 3 2 1 6 6 N 1.30689 * 119.99781 * 339.73345 * 5 3 2 7 7 Si 1.86796 * 120.00216 * 159.72746 * 5 3 2 8 8 H 1.48506 * 109.46887 * 84.99598 * 7 5 3 9 9 H 1.48502 * 109.47376 * 204.99383 * 7 5 3 10 10 H 1.48499 * 109.47173 * 324.99760 * 7 5 3 11 11 C 1.50704 * 119.99507 * 179.97438 * 2 1 3 12 12 C 1.50699 * 109.46898 * 95.00700 * 11 2 1 13 13 C 1.38248 * 119.98293 * 269.72389 * 12 11 2 14 14 C 1.38216 * 120.01180 * 179.73119 * 13 12 11 15 15 C 1.38349 * 119.98633 * 0.53918 * 14 13 12 16 16 Cl 1.73600 * 120.01600 * 179.70813 * 15 14 13 17 17 C 1.38357 * 119.97498 * 359.73140 * 15 14 13 18 18 C 1.38213 * 119.98388 * 359.97438 * 17 15 14 19 19 H 1.08004 * 119.99839 * 354.17277 * 1 2 3 20 20 H 1.08002 * 120.00284 * 174.16615 * 1 2 3 21 21 H 0.97002 * 120.00072 * 180.02562 * 6 5 3 22 22 H 1.08994 * 109.47410 * 334.99943 * 11 2 1 23 23 H 1.08999 * 109.47019 * 214.99897 * 11 2 1 24 24 H 1.08000 * 119.99531 * 359.97438 * 13 12 11 25 25 H 1.07999 * 120.00659 * 180.27203 * 14 13 12 26 26 H 1.07997 * 120.00950 * 179.97438 * 17 15 14 27 27 H 1.08003 * 119.99411 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3503 0.0000 0.0000 3 6 2.0507 1.2130 0.0000 4 1 3.0456 1.2622 0.4174 5 6 1.4598 2.3643 -0.5422 6 7 0.4649 2.2542 -1.3825 7 14 2.0950 4.0543 -0.0630 8 1 3.2488 4.4126 -0.9265 9 1 1.0145 5.0576 -0.2394 10 1 2.5268 4.0363 1.3577 11 6 2.1037 -1.3052 0.0006 12 6 2.4622 -1.6788 -1.4146 13 6 1.5960 -2.4513 -2.1658 14 6 1.9217 -2.7897 -3.4657 15 6 3.1198 -2.3646 -4.0114 16 17 3.5330 -2.7955 -5.6415 17 6 3.9888 -1.5962 -3.2573 18 6 3.6593 -1.2534 -1.9596 19 1 -0.5400 0.9305 0.0950 20 1 -0.5401 -0.9305 -0.0951 21 1 0.0566 3.0501 -1.7577 22 1 1.4788 -2.0853 0.4352 23 1 3.0144 -1.1987 0.5900 24 1 0.6629 -2.7872 -1.7381 25 1 1.2429 -3.3895 -4.0539 26 1 4.9244 -1.2644 -3.6826 27 1 4.3377 -0.6539 -1.3707 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230513758.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:50 Heat of formation + Delta-G solvation = 4.917661 kcal Electronic energy + Delta-G solvation = -12392.040257 eV Core-core repulsion = 10139.776140 eV Total energy + Delta-G solvation = -2252.264117 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.051 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.28042 -37.58978 -36.74840 -34.13000 -31.92375 -31.31988 -27.37496 -26.71150 -23.66483 -22.51635 -20.84146 -18.06841 -17.57364 -16.83888 -16.36470 -16.10076 -15.11473 -14.60918 -14.44611 -14.32129 -14.11609 -13.63656 -12.90039 -12.82500 -12.59896 -12.36147 -12.22147 -12.05687 -11.69287 -11.63238 -11.35671 -10.85575 -9.89310 -9.44075 -9.24424 -8.47393 -6.17839 0.29541 0.44445 1.19027 1.31948 1.40210 1.51518 2.10138 2.29890 2.78148 3.35993 3.90420 4.03239 4.21603 4.42357 4.51701 4.77015 4.79454 4.92717 5.11614 5.14091 5.31597 5.32905 5.40097 5.52852 5.78598 5.96129 6.09701 6.30969 6.92343 7.17778 7.44163 8.55167 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.033473 B = 0.007701 C = 0.007034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.288145 B = 3635.025915 C = 3979.959431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.371 4.371 2 C 0.039 3.961 3 C -0.506 4.506 4 H 0.067 0.933 5 C 0.037 3.963 6 N -0.831 5.831 7 Si 0.961 3.039 8 H -0.263 1.263 9 H -0.277 1.277 10 H -0.259 1.259 11 C -0.044 4.044 12 C -0.055 4.055 13 C -0.116 4.116 14 C -0.113 4.113 15 C -0.055 4.055 16 Cl -0.072 7.072 17 C -0.113 4.113 18 C -0.108 4.108 19 H 0.053 0.947 20 H 0.050 0.950 21 H 0.276 0.724 22 H 0.068 0.932 23 H 0.073 0.927 24 H 0.131 0.869 25 H 0.148 0.852 26 H 0.147 0.853 27 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.273 -6.927 -4.430 10.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.412 4.412 2 C 0.037 3.963 3 C -0.537 4.537 4 H 0.086 0.914 5 C -0.176 4.176 6 N -0.458 5.458 7 Si 0.783 3.217 8 H -0.188 1.188 9 H -0.202 1.202 10 H -0.183 1.183 11 C -0.082 4.082 12 C -0.055 4.055 13 C -0.135 4.135 14 C -0.131 4.131 15 C -0.081 4.081 16 Cl -0.043 7.043 17 C -0.132 4.132 18 C -0.126 4.126 19 H 0.072 0.928 20 H 0.068 0.932 21 H 0.086 0.914 22 H 0.087 0.913 23 H 0.092 0.908 24 H 0.149 0.851 25 H 0.165 0.835 26 H 0.165 0.835 27 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.170 -6.860 -4.728 10.368 hybrid contribution -0.183 0.932 -0.068 0.952 sum 5.987 -5.929 -4.796 9.695 Atomic orbital electron populations 1.23039 0.95113 0.96345 1.26702 1.18592 0.92982 0.92098 0.92612 1.19372 1.02275 0.94452 1.37555 0.91442 1.26596 0.94421 1.04312 0.92293 1.69916 1.22068 1.31928 1.21937 0.85555 0.78657 0.77495 0.79986 1.18780 1.20183 1.18292 1.19731 1.00008 0.96088 0.92338 1.20056 0.93974 0.94613 0.96854 1.21128 0.99453 0.98800 0.94069 1.21149 0.95717 1.00934 0.95312 1.20918 0.97174 1.03141 0.86884 1.98326 1.93539 1.92177 1.20305 1.21178 1.00223 0.97964 0.93788 1.21133 0.97142 0.99064 0.95303 0.92846 0.93154 0.91388 0.91325 0.90804 0.85136 0.83473 0.83487 0.84908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.37 -20.52 12.92 67.08 0.87 -19.65 15 2 C 0.04 2.01 4.90 -20.16 -0.10 1.92 15 3 C -0.51 -27.21 9.01 23.22 0.21 -27.00 15 4 H 0.07 3.44 7.93 -2.91 -0.02 3.42 15 5 C 0.04 1.98 5.00 85.37 0.43 2.40 15 6 N -0.83 -46.88 11.33 21.89 0.25 -46.63 15 7 Si 0.96 40.36 29.61 68.60 2.03 42.39 15 8 H -0.26 -10.55 7.11 99.48 0.71 -9.84 15 9 H -0.28 -11.36 7.11 99.48 0.71 -10.65 15 10 H -0.26 -10.56 7.11 99.48 0.71 -9.85 15 11 C -0.04 -1.86 5.47 29.10 0.16 -1.70 15 12 C -0.05 -2.14 5.12 -19.86 -0.10 -2.24 15 13 C -0.12 -4.18 9.70 22.27 0.22 -3.97 15 14 C -0.11 -3.59 9.83 22.29 0.22 -3.37 15 15 C -0.05 -1.72 6.32 22.32 0.14 -1.58 15 16 Cl -0.07 -1.93 28.96 -2.72 -0.08 -2.01 15 17 C -0.11 -3.62 9.83 22.29 0.22 -3.40 15 18 C -0.11 -3.91 9.70 22.26 0.22 -3.70 15 19 H 0.05 3.22 6.49 -2.91 -0.02 3.20 15 20 H 0.05 2.59 8.06 -2.91 -0.02 2.57 15 21 H 0.28 14.39 8.29 -92.71 -0.77 13.62 15 22 H 0.07 2.64 7.98 -2.39 -0.02 2.62 15 23 H 0.07 2.85 8.07 -2.39 -0.02 2.83 15 24 H 0.13 4.44 8.06 -2.91 -0.02 4.42 15 25 H 0.15 3.90 8.06 -2.91 -0.02 3.88 15 26 H 0.15 3.93 8.06 -2.91 -0.02 3.90 15 27 H 0.13 4.57 8.06 -2.91 -0.02 4.55 15 Total: -1.00 -59.70 258.06 5.83 -53.87 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: 1.15 Total: 14.67 kcal Atomic # 6 Polarization: -64.76 SS G_CDS: 2.47 Total: -62.29 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: 0.25 Total: -46.63 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 2.03 Total: 42.39 kcal Atomic # 17 Polarization: -1.93 SS G_CDS: -0.08 Total: -2.01 kcal Total: -59.70 5.83 -53.87 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230513758.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.791 kcal (2) G-P(sol) polarization free energy of solvation -59.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds