Wall clock time and date at job start Mon Mar 30 2020 02:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99831 * 2 1 4 4 H 1.48500 * 109.46855 * 269.99441 * 3 2 1 5 5 H 1.48499 * 109.47326 * 29.99771 * 3 2 1 6 6 H 1.48497 * 109.46885 * 149.99643 * 3 2 1 7 7 C 1.37871 * 119.99848 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00102 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00081 * 0.02562 * 7 2 1 10 10 C 1.50706 * 109.47001 * 179.97438 * 9 7 2 11 11 N 1.31133 * 126.54827 * 90.00107 * 10 9 7 12 12 C 1.34489 * 105.61151 * 180.02562 * 11 10 9 13 13 C 1.50708 * 126.28384 * 179.97438 * 12 11 10 14 14 F 1.39900 * 109.46936 * 105.00187 * 13 12 11 15 15 F 1.39896 * 109.47131 * 224.99867 * 13 12 11 16 16 F 1.39895 * 109.46994 * 344.99807 * 13 12 11 17 17 N 1.29939 * 107.42909 * 359.97438 * 12 11 10 18 18 O 1.21301 * 110.24820 * 359.71012 * 17 12 11 19 19 H 0.96998 * 119.99944 * 0.02562 * 1 2 3 20 20 H 1.09000 * 109.46978 * 60.00053 * 9 7 2 21 21 H 1.09000 * 109.46976 * 299.99298 * 9 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2303 -3.6446 0.0005 11 7 2.7378 -4.2382 1.0540 12 6 3.5545 -5.1925 0.5734 13 6 4.3785 -6.1551 1.3894 14 9 3.7856 -7.4218 1.3549 15 9 5.6702 -6.2302 0.8576 16 9 4.4444 -5.7068 2.7129 17 7 3.5027 -5.1322 -0.7235 18 8 2.7430 -4.2535 -1.0729 19 1 -0.4850 0.8400 -0.0004 20 1 0.6247 -2.5570 -0.8897 21 1 0.6241 -2.5567 0.8904 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236133085.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:34 Heat of formation + Delta-G solvation = -89.824559 kcal Electronic energy + Delta-G solvation = -14780.754448 eV Core-core repulsion = 11438.275751 eV Total energy + Delta-G solvation = -3342.478697 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 222.036 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -50.26521 -47.81096 -47.73866 -45.38366 -35.71128 -34.10974 -32.34390 -28.83802 -27.48432 -24.34667 -23.17245 -21.55104 -18.81728 -18.68403 -18.16870 -17.77646 -16.58350 -16.41256 -14.96215 -14.63367 -14.54363 -14.17741 -13.88817 -13.88159 -13.59888 -13.07378 -12.63269 -12.39798 -11.69534 -11.64871 -11.15186 -10.91015 -10.80288 -10.32573 -10.16504 -9.35072 -8.72472 -6.36433 -4.43737 1.29919 2.13704 2.32074 3.18259 3.22014 3.25345 3.29087 3.36712 3.64655 4.20387 4.23233 4.66076 5.01639 5.04811 6.06888 6.11132 6.90912 6.97145 7.55555 7.75402 8.30520 8.56475 9.22536 10.73754 Molecular weight = 222.04amu Principal moments of inertia in cm(-1) A = 0.050260 B = 0.006965 C = 0.006733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.968402 B = 4019.032588 C = 4157.518457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.069 3.931 3 Si 0.909 3.091 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.531 4.531 8 H 0.063 0.937 9 C 0.099 3.901 10 C 0.257 3.743 11 N -0.474 5.474 12 C 0.067 3.933 13 C 0.579 3.421 14 F -0.163 7.163 15 F -0.162 7.162 16 F -0.151 7.151 17 N -0.352 5.352 18 O 0.093 5.907 19 H 0.270 0.730 20 H 0.066 0.934 21 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.115 -8.469 0.997 9.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.135 4.135 3 Si 0.735 3.265 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.569 4.569 8 H 0.082 0.918 9 C 0.060 3.940 10 C 0.040 3.960 11 N -0.207 5.207 12 C -0.207 4.207 13 C 0.523 3.477 14 F -0.145 7.145 15 F -0.143 7.143 16 F -0.132 7.132 17 N -0.058 5.058 18 O 0.027 5.973 19 H 0.079 0.921 20 H 0.084 0.916 21 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.512 -9.021 0.981 10.617 hybrid contribution 0.482 0.843 0.094 0.976 sum 5.994 -8.178 1.074 10.196 Atomic orbital electron populations 1.69912 1.06056 1.27903 1.48338 1.24921 0.95029 0.99539 0.94049 0.86310 0.79739 0.81951 0.78483 1.20166 1.20744 1.19593 1.20764 0.93329 0.88579 1.54263 0.91847 1.18411 0.89627 0.84017 1.01901 1.30463 0.93846 0.94090 0.77629 1.71978 1.11811 1.07692 1.29241 1.25371 1.03778 1.01378 0.90173 1.16134 0.76735 0.77588 0.77252 1.93252 1.83759 1.41152 1.96301 1.93252 1.38605 1.96225 1.86247 1.93272 1.96091 1.88957 1.34901 1.74576 1.10030 1.07666 1.13478 1.85327 1.41675 1.33542 1.36727 0.92056 0.91647 0.90635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.56 13.29 55.43 0.74 -22.82 14 2 C 0.07 1.77 5.46 -17.82 -0.10 1.67 14 3 Si 0.91 20.01 29.54 -169.99 -5.02 14.99 14 4 H -0.28 -5.98 7.11 56.52 0.40 -5.58 14 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 14 6 H -0.27 -5.99 7.11 56.52 0.40 -5.59 14 7 C -0.53 -13.52 9.09 -34.44 -0.31 -13.84 14 8 H 0.06 1.63 7.74 -52.48 -0.41 1.22 14 9 C 0.10 2.26 5.60 -29.03 -0.16 2.09 14 10 C 0.26 5.40 7.70 -13.05 -0.10 5.30 14 11 N -0.47 -10.00 11.41 -9.87 -0.11 -10.11 14 12 C 0.07 1.28 7.45 -156.38 -1.17 0.12 14 13 C 0.58 9.38 3.57 36.01 0.13 9.51 14 14 F -0.16 -2.46 17.30 2.25 0.04 -2.42 14 15 F -0.16 -2.49 17.30 2.25 0.04 -2.45 14 16 F -0.15 -2.44 17.19 2.25 0.04 -2.40 14 17 N -0.35 -6.81 12.16 30.89 0.38 -6.44 14 18 O 0.09 1.85 11.31 18.12 0.20 2.05 14 19 H 0.27 6.78 8.31 -40.82 -0.34 6.44 14 20 H 0.07 1.46 8.14 -51.93 -0.42 1.04 14 21 H 0.08 1.78 8.14 -51.93 -0.42 1.35 14 LS Contribution 222.02 15.07 3.35 3.35 Total: -1.00 -25.80 222.02 -2.45 -28.26 By element: Atomic # 1 Polarization: -6.47 SS G_CDS: -0.39 Total: -6.85 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: -1.71 Total: 4.85 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: 1.00 Total: -39.37 kcal Atomic # 8 Polarization: 1.85 SS G_CDS: 0.20 Total: 2.05 kcal Atomic # 9 Polarization: -7.39 SS G_CDS: 0.12 Total: -7.27 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 3.35 Total: 3.35 kcal Total: -25.80 -2.45 -28.26 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236133085.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.569 kcal (2) G-P(sol) polarization free energy of solvation -25.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds