Wall clock time and date at job start Mon Mar 30 2020 03:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50698 * 109.46937 * 2 1 4 4 C 1.34182 * 125.77497 * 125.00153 * 3 2 1 5 5 N 1.39285 * 107.06675 * 180.02562 * 4 3 2 6 6 C 1.36113 * 138.91578 * 179.97438 * 5 4 3 7 7 C 1.36187 * 115.39261 * 180.02562 * 6 5 4 8 8 C 1.40285 * 125.37285 * 179.97438 * 7 6 5 9 9 H 1.07997 * 120.00367 * 0.02562 * 8 7 6 10 10 C 1.39939 * 119.99649 * 179.72722 * 8 7 6 11 11 N 1.30918 * 120.00368 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99650 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47208 * 89.99891 * 12 10 8 14 14 H 1.48504 * 109.47159 * 209.99959 * 12 10 8 15 15 H 1.48506 * 109.47517 * 330.00054 * 12 10 8 16 16 S 1.75777 * 109.25293 * 0.23407 * 7 6 5 17 17 C 1.35340 * 106.50504 * 359.97438 * 5 4 3 18 18 N 1.32291 * 108.75148 * 0.02562 * 17 5 4 19 19 H 1.08999 * 109.47164 * 299.99973 * 1 2 3 20 20 H 1.09000 * 109.46955 * 60.00260 * 1 2 3 21 21 H 1.09000 * 109.46567 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47164 * 240.00027 * 2 1 3 23 23 H 1.08999 * 109.47401 * 120.00033 * 2 1 3 24 24 H 1.08001 * 126.46699 * 0.02562 * 4 3 2 25 25 H 1.08005 * 122.30446 * 0.05551 * 6 5 4 26 26 H 0.96995 * 120.00193 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8825 1.9523 0.8917 5 7 3.0801 3.2817 0.5261 6 6 3.7793 4.3695 0.9510 7 6 3.6197 5.4954 0.2017 8 6 4.2381 6.7300 0.4492 9 1 4.9037 6.8412 1.2924 10 6 3.9975 7.8158 -0.4002 11 7 3.1956 7.6793 -1.4261 12 14 4.8205 9.4600 -0.0703 13 1 6.1238 9.5124 -0.7802 14 1 3.9468 10.5575 -0.5577 15 1 5.0452 9.6172 1.3892 16 16 2.5106 5.1597 -1.1200 17 6 2.3316 3.4911 -0.5818 18 7 1.7053 2.3675 -0.8905 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3632 -1.0277 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 3.3292 1.4449 1.7340 25 1 4.4172 4.3415 1.8221 26 1 3.0285 8.4320 -2.0146 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238299325.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:20 Heat of formation + Delta-G solvation = 54.006927 kcal Electronic energy + Delta-G solvation = -12400.024730 eV Core-core repulsion = 10184.225740 eV Total energy + Delta-G solvation = -2215.798990 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.052 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.03565 -35.61919 -34.15414 -32.19575 -29.73494 -28.01319 -25.33193 -22.94054 -22.13611 -19.48052 -19.26212 -17.45009 -16.29764 -15.35928 -14.66773 -14.39557 -13.74867 -13.67309 -13.24014 -12.81105 -12.27334 -11.83844 -11.65667 -11.62195 -11.03361 -10.81262 -10.71266 -10.60710 -10.42886 -9.64501 -9.48374 -8.88964 -8.81265 -7.61043 -7.29807 -6.30270 -4.82373 2.38748 2.66409 2.83328 2.88286 2.91534 3.42771 3.58974 3.60960 3.97602 4.25230 4.69675 5.48687 5.53339 5.81834 5.95779 6.11851 6.23755 6.29693 6.49532 6.65508 6.68797 6.79197 7.01255 7.52514 7.64679 7.79543 7.97399 8.24235 8.51950 9.10084 9.63857 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.081564 B = 0.007148 C = 0.006683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 343.208294 B = 3916.489179 C = 4188.524840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.027 4.027 3 C 0.014 3.986 4 C -0.112 4.112 5 N -0.331 5.331 6 C -0.242 4.242 7 C 0.038 3.962 8 C -0.394 4.394 9 H 0.101 0.899 10 C 0.058 3.942 11 N -0.793 5.793 12 Si 0.943 3.057 13 H -0.263 1.263 14 H -0.271 1.271 15 H -0.257 1.257 16 S 0.222 5.778 17 C 0.061 3.939 18 N -0.493 5.493 19 H 0.049 0.951 20 H 0.061 0.939 21 H 0.046 0.954 22 H 0.065 0.935 23 H 0.064 0.936 24 H 0.154 0.846 25 H 0.143 0.857 26 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.066 -1.992 1.768 2.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.065 4.065 3 C -0.122 4.122 4 C -0.250 4.250 5 N -0.002 5.002 6 C -0.368 4.368 7 C -0.083 4.083 8 C -0.428 4.428 9 H 0.119 0.881 10 C -0.162 4.162 11 N -0.420 5.420 12 Si 0.766 3.234 13 H -0.188 1.188 14 H -0.195 1.195 15 H -0.181 1.181 16 S 0.467 5.533 17 C -0.303 4.303 18 N -0.218 5.218 19 H 0.068 0.932 20 H 0.080 0.920 21 H 0.065 0.935 22 H 0.083 0.917 23 H 0.083 0.917 24 H 0.172 0.828 25 H 0.161 0.839 26 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.012 -1.159 -0.059 1.539 hybrid contribution 1.582 -0.046 2.103 2.632 sum 0.570 -1.205 2.044 2.441 Atomic orbital electron populations 1.21640 0.95454 1.00186 1.02444 1.19630 0.95571 0.90090 1.01223 1.20246 1.00807 0.96041 0.95149 1.21981 1.12211 0.83747 1.07014 1.42863 1.29458 1.08111 1.19721 1.19903 1.18865 0.86415 1.11589 1.21125 0.96952 0.95540 0.94663 1.18968 1.22096 0.91489 1.10263 0.88105 1.26207 0.94029 1.02630 0.93296 1.68400 1.27571 1.34406 1.11658 0.85682 0.79397 0.77991 0.80321 1.18802 1.19549 1.18071 1.85592 1.48380 0.89008 1.30272 1.28096 1.02229 1.04907 0.95041 1.70204 1.26565 0.97210 1.27790 0.93226 0.92037 0.93460 0.91675 0.91694 0.82835 0.83943 0.88263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.88 37.16 0.37 -1.78 15 2 C -0.03 -0.44 6.49 -27.88 -0.18 -0.63 15 3 C 0.01 0.31 6.32 -83.07 -0.53 -0.22 15 4 C -0.11 -2.54 11.90 -15.59 -0.19 -2.73 15 5 N -0.33 -8.46 3.13 -62.72 -0.20 -8.66 15 6 C -0.24 -6.11 11.31 -16.39 -0.19 -6.29 15 7 C 0.04 0.96 6.13 -39.55 -0.24 0.72 15 8 C -0.39 -9.44 9.29 -38.18 -0.35 -9.79 15 9 H 0.10 2.25 7.84 -52.49 -0.41 1.83 15 10 C 0.06 1.28 5.50 -17.30 -0.10 1.19 15 11 N -0.79 -18.25 10.66 55.55 0.59 -17.65 15 12 Si 0.94 16.53 29.56 -169.99 -5.02 11.51 15 13 H -0.26 -4.57 7.11 56.52 0.40 -4.16 15 14 H -0.27 -4.64 7.11 56.52 0.40 -4.24 15 15 H -0.26 -4.44 7.11 56.52 0.40 -4.04 15 16 S 0.22 5.61 20.30 -107.50 -2.18 3.43 15 17 C 0.06 1.61 8.89 -88.59 -0.79 0.82 15 18 N -0.49 -12.53 11.30 -9.75 -0.11 -12.64 15 19 H 0.05 0.78 8.14 -51.93 -0.42 0.35 15 20 H 0.06 1.04 8.14 -51.93 -0.42 0.62 15 21 H 0.05 0.58 8.14 -51.93 -0.42 0.16 15 22 H 0.06 1.03 8.14 -51.93 -0.42 0.61 15 23 H 0.06 0.92 8.10 -51.93 -0.42 0.50 15 24 H 0.15 2.92 8.06 -52.49 -0.42 2.49 15 25 H 0.14 3.31 8.06 -52.48 -0.42 2.89 15 26 H 0.30 6.25 8.30 -40.82 -0.34 5.91 15 LS Contribution 244.91 15.07 3.69 3.69 Total: -1.00 -28.19 244.91 -7.92 -36.12 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -2.50 Total: 2.92 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: -2.19 Total: -18.71 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 0.29 Total: -38.96 kcal Atomic # 14 Polarization: 16.53 SS G_CDS: -5.02 Total: 11.51 kcal Atomic # 16 Polarization: 5.61 SS G_CDS: -2.18 Total: 3.43 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -28.19 -7.92 -36.12 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238299325.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.125 kcal (2) G-P(sol) polarization free energy of solvation -28.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds