Wall clock time and date at job start Mon Mar 30 2020 02:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31644 * 1 3 3 Si 1.86797 * 119.99815 * 2 1 4 4 H 1.48500 * 109.47225 * 269.99966 * 3 2 1 5 5 H 1.48497 * 109.47272 * 29.99892 * 3 2 1 6 6 H 1.48508 * 109.47103 * 149.99764 * 3 2 1 7 7 C 1.38695 * 120.00240 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99353 * 0.02562 * 7 2 1 9 9 S 1.76196 * 120.00193 * 180.02562 * 7 2 1 10 10 C 1.76195 * 100.00163 * 180.02562 * 9 7 2 11 11 N 1.30876 * 121.23586 * 359.97252 * 10 9 7 12 12 S 1.69945 * 105.65919 * 180.02562 * 11 10 9 13 13 C 1.72269 * 94.64456 * 0.02562 * 12 11 10 14 14 Cl 1.73600 * 127.39909 * 179.73929 * 13 12 11 15 15 N 1.30940 * 105.20894 * 0.02562 * 13 12 11 16 16 H 0.96998 * 120.00231 * 0.02562 * 1 2 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0465 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5480 1.4402 0.7001 7 6 2.0100 -1.2011 0.0005 8 1 1.4699 -2.1364 0.0005 9 16 3.7719 -1.2011 0.0012 10 6 4.0779 -2.9363 0.0010 11 7 3.0938 -3.7990 0.0009 12 16 3.8275 -5.3319 0.0014 13 6 5.4365 -4.7164 0.0024 14 17 6.9140 -5.6277 0.0095 15 7 5.3059 -3.4135 0.0028 16 1 -0.4850 0.8400 -0.0004 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238517398.mol2 16 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:31 Heat of formation + Delta-G solvation = 24.758489 kcal Electronic energy + Delta-G solvation = -8688.577728 eV Core-core repulsion = 6640.164264 eV Total energy + Delta-G solvation = -2048.413465 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 221.938 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -41.08867 -38.34455 -34.83975 -33.36025 -28.04668 -27.34830 -22.95330 -20.69447 -19.31363 -17.99313 -17.26018 -16.74933 -16.68213 -15.01869 -14.09821 -13.70932 -13.64847 -13.31797 -13.20726 -13.08061 -12.20370 -11.80950 -11.47471 -11.35678 -11.16356 -11.03932 -10.77533 -9.14864 -8.59972 -6.43141 -0.91761 -0.58306 0.06450 0.34575 1.14294 1.15830 1.31837 1.39921 1.50484 2.13011 2.41352 2.78945 3.57453 4.29224 5.66113 6.02400 6.26055 6.76258 8.52740 Molecular weight = 221.94amu Principal moments of inertia in cm(-1) A = 0.067866 B = 0.008179 C = 0.007318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 412.478335 B = 3422.397673 C = 3825.032360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.054 3.946 3 Si 0.906 3.094 4 H -0.250 1.250 5 H -0.250 1.250 6 H -0.219 1.219 7 C -0.564 4.564 8 H 0.078 0.922 9 S 0.128 5.872 10 C 0.243 3.757 11 N -0.507 5.507 12 S 0.293 5.707 13 C 0.117 3.883 14 Cl 0.091 6.909 15 N -0.503 5.503 16 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.231 -8.001 0.113 14.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.154 4.154 3 Si 0.725 3.275 4 H -0.174 1.174 5 H -0.173 1.173 6 H -0.143 1.143 7 C -0.713 4.713 8 H 0.097 0.903 9 S 0.358 5.642 10 C -0.148 4.148 11 N -0.346 5.346 12 S 0.424 5.576 13 C -0.198 4.198 14 Cl 0.119 6.881 15 N -0.230 5.230 16 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 11.795 -7.437 0.117 13.944 hybrid contribution -0.296 -0.003 -0.032 0.298 sum 11.499 -7.439 0.085 13.696 Atomic orbital electron populations 1.70015 1.07721 1.29765 1.46221 1.25669 0.95474 1.02386 0.91916 0.86039 0.81167 0.78987 0.81302 1.17366 1.17321 1.14289 1.22778 0.90133 0.98432 1.59926 0.90342 1.82705 1.07058 0.88494 1.85992 1.25486 0.84622 1.04614 1.00053 1.78138 1.25817 0.98250 1.32371 1.84487 0.92710 1.14582 1.65791 1.29282 0.98156 0.92491 0.99908 1.98442 1.27277 1.66657 1.95738 1.67197 1.22700 1.11915 1.21171 0.90648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.00 13.97 21.63 0.30 -52.70 13 2 C 0.05 2.97 5.50 84.83 0.47 3.44 13 3 Si 0.91 39.24 27.73 68.60 1.90 41.14 13 4 H -0.25 -10.37 7.11 99.48 0.71 -9.67 13 5 H -0.25 -10.19 7.11 99.48 0.71 -9.48 13 6 H -0.22 -8.85 6.74 99.48 0.67 -8.18 13 7 C -0.56 -32.30 9.82 67.93 0.67 -31.63 13 8 H 0.08 5.05 6.86 -2.91 -0.02 5.03 13 9 S 0.13 6.12 19.84 -56.49 -1.12 5.00 13 10 C 0.24 11.04 7.75 181.17 1.40 12.44 13 11 N -0.51 -23.37 10.47 -67.02 -0.70 -24.07 13 12 S 0.29 9.58 23.80 -56.49 -1.34 8.23 13 13 C 0.12 3.68 8.49 130.38 1.11 4.79 13 14 Cl 0.09 2.00 29.33 -2.72 -0.08 1.92 13 15 N -0.50 -19.75 10.61 -200.40 -2.13 -21.88 13 16 H 0.28 15.14 8.31 -92.71 -0.77 14.37 13 Total: -1.00 -63.01 203.44 1.77 -61.24 By element: Atomic # 1 Polarization: -9.22 SS G_CDS: 1.29 Total: -7.93 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: 3.64 Total: -10.96 kcal Atomic # 7 Polarization: -96.12 SS G_CDS: -2.53 Total: -98.65 kcal Atomic # 14 Polarization: 39.24 SS G_CDS: 1.90 Total: 41.14 kcal Atomic # 16 Polarization: 15.70 SS G_CDS: -2.47 Total: 13.24 kcal Atomic # 17 Polarization: 2.00 SS G_CDS: -0.08 Total: 1.92 kcal Total: -63.01 1.77 -61.24 kcal The number of atoms in the molecule is 16 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238517398.mol2 16 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.997 kcal (2) G-P(sol) polarization free energy of solvation -63.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds