Wall clock time and date at job start Mon Mar 30 2020 03:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00245 * 2 1 4 4 H 1.48493 * 109.47384 * 90.00036 * 3 2 1 5 5 H 1.48497 * 109.46781 * 210.00119 * 3 2 1 6 6 H 1.48502 * 109.47019 * 329.99697 * 3 2 1 7 7 C 1.37883 * 119.99436 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99447 * 173.65425 * 7 2 1 9 9 C 1.50690 * 119.99959 * 353.65536 * 7 2 1 10 10 H 1.08996 * 110.27284 * 327.00059 * 9 7 2 11 11 C 1.54341 * 110.30308 * 89.07893 * 9 7 2 12 12 C 1.54348 * 102.39815 * 92.57062 * 11 9 7 13 13 C 1.51380 * 105.16732 * 26.35142 * 12 11 9 14 14 C 1.38472 * 130.37628 * 162.80947 * 13 12 11 15 15 C 1.38229 * 120.20448 * 179.97438 * 14 13 12 16 16 Cl 1.73596 * 120.04820 * 180.02562 * 15 14 13 17 17 C 1.38368 * 119.90161 * 0.02562 * 15 14 13 18 18 C 1.38076 * 119.92715 * 359.97438 * 17 15 14 19 19 C 1.38320 * 120.29961 * 0.02562 * 18 17 15 20 20 H 0.96992 * 120.00266 * 174.66452 * 1 2 3 21 21 H 1.09004 * 110.82279 * 210.79868 * 11 9 7 22 22 H 1.08996 * 110.82488 * 334.14742 * 11 9 7 23 23 H 1.08997 * 110.30407 * 145.26861 * 12 11 9 24 24 H 1.08999 * 110.30237 * 267.33249 * 12 11 9 25 25 H 1.08000 * 119.90283 * 359.97438 * 14 13 12 26 26 H 1.08005 * 120.03573 * 180.02562 * 17 15 14 27 27 H 1.07998 * 119.89085 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4467 2.6527 -0.7001 7 6 2.0045 -1.1942 -0.0005 8 1 3.0795 -1.1970 -0.1039 9 6 1.2578 -2.4952 0.1431 10 1 0.3837 -2.3606 0.7801 11 6 0.8338 -3.0252 -1.2431 12 6 2.0116 -3.9493 -1.6190 13 6 2.6002 -4.3978 -0.2984 14 6 3.4474 -5.4534 -0.0063 15 6 3.8615 -5.6735 1.2940 16 17 4.9242 -6.9977 1.6555 17 6 3.4276 -4.8368 2.3071 18 6 2.5827 -3.7840 2.0166 19 6 2.1668 -3.5614 0.7164 20 1 -0.4850 -0.8363 -0.0781 21 1 -0.0956 -3.5906 -1.1741 22 1 0.7358 -2.2076 -1.9572 23 1 1.6522 -4.8091 -2.1843 24 1 2.7536 -3.3997 -2.1982 25 1 3.7858 -6.1068 -0.7968 26 1 3.7501 -5.0066 3.3238 27 1 2.2441 -3.1316 2.8078 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238532905.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:26 Heat of formation + Delta-G solvation = -2.491834 kcal Electronic energy + Delta-G solvation = -12612.484787 eV Core-core repulsion = 10359.899370 eV Total energy + Delta-G solvation = -2252.585417 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.051 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.52399 -36.54379 -35.01602 -32.59029 -30.69794 -28.17309 -26.89326 -23.86249 -22.17705 -20.41611 -19.93565 -17.07108 -15.81081 -15.30741 -14.60202 -14.24200 -13.78421 -13.18713 -12.89575 -12.86371 -12.47111 -11.57783 -11.35012 -11.09225 -10.89670 -10.79726 -10.55578 -10.38551 -10.18580 -10.14971 -9.70287 -8.90459 -8.43219 -8.38787 -7.71644 -6.44559 -4.17691 1.73360 1.77985 2.43464 3.39987 3.42111 3.58507 4.16380 4.48253 5.03332 5.25997 5.29469 5.46598 5.73754 5.86777 5.88973 5.92885 6.19133 6.36517 6.48717 6.60117 6.73518 6.76856 6.90376 7.08502 7.19298 7.39141 7.47028 8.07605 8.35363 8.75743 9.53024 10.92933 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.042637 B = 0.007597 C = 0.007040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.544867 B = 3684.625882 C = 3976.347877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.024 3.976 3 Si 1.069 2.931 4 H -0.287 1.287 5 H -0.288 1.288 6 H -0.285 1.285 7 C -0.583 4.583 8 H 0.051 0.949 9 C 0.060 3.940 10 H 0.045 0.955 11 C -0.118 4.118 12 C -0.068 4.068 13 C -0.096 4.096 14 C -0.105 4.105 15 C -0.054 4.054 16 Cl -0.093 7.093 17 C -0.115 4.115 18 C -0.103 4.103 19 C -0.037 4.037 20 H 0.272 0.728 21 H 0.042 0.958 22 H 0.073 0.927 23 H 0.058 0.942 24 H 0.076 0.924 25 H 0.120 0.880 26 H 0.125 0.875 27 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.241 -9.178 0.937 10.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.181 4.181 3 Si 0.897 3.103 4 H -0.213 1.213 5 H -0.214 1.214 6 H -0.210 1.210 7 C -0.621 4.621 8 H 0.069 0.931 9 C 0.041 3.959 10 H 0.063 0.937 11 C -0.156 4.156 12 C -0.105 4.105 13 C -0.097 4.097 14 C -0.123 4.123 15 C -0.080 4.080 16 Cl -0.065 7.065 17 C -0.134 4.134 18 C -0.121 4.121 19 C -0.037 4.037 20 H 0.083 0.917 21 H 0.061 0.939 22 H 0.092 0.908 23 H 0.077 0.923 24 H 0.095 0.905 25 H 0.138 0.862 26 H 0.143 0.857 27 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.133 -7.645 1.032 9.266 hybrid contribution 0.465 -1.862 0.026 1.920 sum 5.597 -9.508 1.058 11.084 Atomic orbital electron populations 1.70752 1.06875 1.31034 1.45626 1.25837 0.96421 1.02457 0.93358 0.83548 0.74739 0.75103 0.76948 1.21316 1.21407 1.21027 1.21751 0.94707 0.90421 1.55228 0.93077 1.18605 0.93848 0.91934 0.91509 0.93701 1.22555 0.94755 0.97607 1.00661 1.20944 0.98196 0.98309 0.93082 1.20755 0.97058 0.94419 0.97454 1.20335 0.98996 0.98532 0.94480 1.20509 0.99474 0.93155 0.94908 1.98312 1.65311 1.47711 1.95134 1.20811 0.99026 0.95376 0.98143 1.20549 0.97886 0.96938 0.96756 1.21396 0.95763 0.94367 0.92175 0.91733 0.93921 0.90816 0.92321 0.90540 0.86172 0.85735 0.85695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.06 13.57 55.43 0.75 -25.30 15 2 C 0.02 0.65 5.45 -17.82 -0.10 0.56 15 3 Si 1.07 24.39 29.91 -169.99 -5.08 19.31 15 4 H -0.29 -6.36 7.11 56.52 0.40 -5.96 15 5 H -0.29 -6.33 7.11 56.52 0.40 -5.93 15 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 7 C -0.58 -15.58 8.24 -34.44 -0.28 -15.86 15 8 H 0.05 1.41 7.82 -52.49 -0.41 1.00 15 9 C 0.06 1.43 2.38 -91.89 -0.22 1.21 15 10 H 0.04 1.15 7.09 -51.93 -0.37 0.79 15 11 C -0.12 -2.50 6.46 -25.32 -0.16 -2.67 15 12 C -0.07 -1.28 6.76 -26.84 -0.18 -1.46 15 13 C -0.10 -1.88 6.14 -104.12 -0.64 -2.52 15 14 C -0.10 -1.82 9.82 -39.50 -0.39 -2.21 15 15 C -0.05 -0.91 6.32 -39.54 -0.25 -1.16 15 16 Cl -0.09 -1.34 28.96 -51.86 -1.50 -2.84 15 17 C -0.11 -1.95 9.83 -39.59 -0.39 -2.34 15 18 C -0.10 -1.99 10.03 -39.61 -0.40 -2.39 15 19 C -0.04 -0.79 5.44 -104.17 -0.57 -1.35 15 20 H 0.27 7.69 6.83 -40.82 -0.28 7.41 15 21 H 0.04 0.84 8.14 -51.93 -0.42 0.41 15 22 H 0.07 1.67 7.89 -51.93 -0.41 1.26 15 23 H 0.06 0.94 8.14 -51.93 -0.42 0.51 15 24 H 0.08 1.43 8.14 -51.93 -0.42 1.01 15 25 H 0.12 1.82 8.06 -52.49 -0.42 1.39 15 26 H 0.12 1.79 8.06 -52.48 -0.42 1.37 15 27 H 0.13 2.30 8.06 -52.49 -0.42 1.88 15 LS Contribution 248.87 15.07 3.75 3.75 Total: -1.00 -27.75 248.87 -8.46 -36.20 By element: Atomic # 1 Polarization: 1.87 SS G_CDS: -2.80 Total: -0.93 kcal Atomic # 6 Polarization: -26.61 SS G_CDS: -3.58 Total: -30.19 kcal Atomic # 7 Polarization: -26.06 SS G_CDS: 0.75 Total: -25.30 kcal Atomic # 14 Polarization: 24.39 SS G_CDS: -5.08 Total: 19.31 kcal Atomic # 17 Polarization: -1.34 SS G_CDS: -1.50 Total: -2.84 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -27.75 -8.46 -36.20 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238532905.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.712 kcal (2) G-P(sol) polarization free energy of solvation -27.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds