Wall clock time and date at job start Mon Mar 30 2020 03:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00245 * 2 1 4 4 H 1.48493 * 109.47384 * 90.00036 * 3 2 1 5 5 H 1.48497 * 109.46781 * 210.00119 * 3 2 1 6 6 H 1.48502 * 109.47019 * 329.99697 * 3 2 1 7 7 C 1.37883 * 119.99436 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99447 * 173.65425 * 7 2 1 9 9 C 1.50690 * 119.99959 * 353.65536 * 7 2 1 10 10 H 1.08996 * 110.27284 * 327.00059 * 9 7 2 11 11 C 1.54341 * 110.30308 * 89.07893 * 9 7 2 12 12 C 1.54348 * 102.39815 * 92.57062 * 11 9 7 13 13 C 1.51380 * 105.16732 * 26.35142 * 12 11 9 14 14 C 1.38472 * 130.37628 * 162.80947 * 13 12 11 15 15 C 1.38229 * 120.20448 * 179.97438 * 14 13 12 16 16 Cl 1.73596 * 120.04820 * 180.02562 * 15 14 13 17 17 C 1.38368 * 119.90161 * 0.02562 * 15 14 13 18 18 C 1.38076 * 119.92715 * 359.97438 * 17 15 14 19 19 C 1.38320 * 120.29961 * 0.02562 * 18 17 15 20 20 H 0.96992 * 120.00266 * 174.66452 * 1 2 3 21 21 H 1.09004 * 110.82279 * 210.79868 * 11 9 7 22 22 H 1.08996 * 110.82488 * 334.14742 * 11 9 7 23 23 H 1.08997 * 110.30407 * 145.26861 * 12 11 9 24 24 H 1.08999 * 110.30237 * 267.33249 * 12 11 9 25 25 H 1.08000 * 119.90283 * 359.97438 * 14 13 12 26 26 H 1.08005 * 120.03573 * 180.02562 * 17 15 14 27 27 H 1.07998 * 119.89085 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4467 2.6527 -0.7001 7 6 2.0045 -1.1942 -0.0005 8 1 3.0795 -1.1970 -0.1039 9 6 1.2578 -2.4952 0.1431 10 1 0.3837 -2.3606 0.7801 11 6 0.8338 -3.0252 -1.2431 12 6 2.0116 -3.9493 -1.6190 13 6 2.6002 -4.3978 -0.2984 14 6 3.4474 -5.4534 -0.0063 15 6 3.8615 -5.6735 1.2940 16 17 4.9242 -6.9977 1.6555 17 6 3.4276 -4.8368 2.3071 18 6 2.5827 -3.7840 2.0166 19 6 2.1668 -3.5614 0.7164 20 1 -0.4850 -0.8363 -0.0781 21 1 -0.0956 -3.5906 -1.1741 22 1 0.7358 -2.2076 -1.9572 23 1 1.6522 -4.8091 -2.1843 24 1 2.7536 -3.3997 -2.1982 25 1 3.7858 -6.1068 -0.7968 26 1 3.7501 -5.0066 3.3238 27 1 2.2441 -3.1316 2.8078 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238532905.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:26 Heat of formation + Delta-G solvation = -15.774249 kcal Electronic energy + Delta-G solvation = -12613.060756 eV Core-core repulsion = 10359.899370 eV Total energy + Delta-G solvation = -2253.161386 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.051 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.03655 -37.89675 -36.56619 -34.47217 -32.22690 -29.69093 -28.63474 -25.81256 -23.66747 -21.87222 -21.66512 -18.98045 -17.30316 -16.82591 -16.12331 -15.90587 -15.59083 -14.85411 -14.29771 -14.25917 -14.12979 -13.36248 -12.90487 -12.73048 -12.39367 -12.29480 -12.11228 -12.02858 -11.94674 -11.68230 -11.44267 -10.79121 -10.47181 -9.80169 -9.28943 -8.58950 -6.33259 0.28105 0.35342 1.12970 1.53717 1.60619 1.78863 2.54295 2.73204 3.16854 3.61208 3.83510 4.02363 4.28714 4.31798 4.40447 4.43953 4.73181 4.82474 4.97177 5.06823 5.15666 5.19223 5.25596 5.34834 5.57967 5.84107 5.89397 6.05520 6.20442 6.61963 7.44225 8.77454 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.042637 B = 0.007597 C = 0.007040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.544867 B = 3684.625882 C = 3976.347877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.024 4.024 3 Si 1.111 2.889 4 H -0.275 1.275 5 H -0.274 1.274 6 H -0.283 1.283 7 C -0.587 4.587 8 H 0.039 0.961 9 C 0.052 3.948 10 H 0.012 0.988 11 C -0.114 4.114 12 C -0.061 4.061 13 C -0.103 4.103 14 C -0.101 4.101 15 C -0.051 4.051 16 Cl -0.064 7.064 17 C -0.108 4.108 18 C -0.115 4.115 19 C -0.074 4.074 20 H 0.261 0.739 21 H 0.053 0.947 22 H 0.051 0.949 23 H 0.092 0.908 24 H 0.075 0.925 25 H 0.148 0.852 26 H 0.153 0.847 27 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.025 -10.722 0.969 12.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.223 4.223 3 Si 0.934 3.066 4 H -0.201 1.201 5 H -0.199 1.199 6 H -0.209 1.209 7 C -0.625 4.625 8 H 0.057 0.943 9 C 0.034 3.966 10 H 0.030 0.970 11 C -0.152 4.152 12 C -0.098 4.098 13 C -0.104 4.104 14 C -0.119 4.119 15 C -0.077 4.077 16 Cl -0.035 7.035 17 C -0.126 4.126 18 C -0.133 4.133 19 C -0.074 4.074 20 H 0.071 0.929 21 H 0.072 0.928 22 H 0.069 0.931 23 H 0.111 0.889 24 H 0.093 0.907 25 H 0.166 0.834 26 H 0.171 0.829 27 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 6.926 -9.214 1.068 11.576 hybrid contribution -0.033 -1.522 0.077 1.524 sum 6.892 -10.735 1.144 12.809 Atomic orbital electron populations 1.70856 1.07740 1.30473 1.48073 1.27115 0.96517 1.05848 0.92801 0.82991 0.74188 0.71770 0.77647 1.20114 1.19905 1.20905 1.21978 0.94149 0.92053 1.54312 0.94309 1.18540 0.93140 0.92307 0.92655 0.97000 1.22391 0.96706 0.97650 0.98457 1.20883 0.96830 0.98780 0.93287 1.20838 0.97715 0.94886 0.96912 1.20582 0.97876 0.97863 0.95581 1.20673 0.98947 0.93463 0.94666 1.98329 1.64171 1.46070 1.94970 1.21049 0.97719 0.94145 0.99711 1.20665 0.98665 0.98003 0.96016 1.21278 0.97230 0.95037 0.93882 0.92868 0.92795 0.93058 0.88941 0.90701 0.83413 0.82932 0.85984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.49 13.57 21.45 0.29 -55.20 15 2 C -0.02 -1.34 5.45 84.66 0.46 -0.88 15 3 Si 1.11 49.57 29.91 68.60 2.05 51.62 15 4 H -0.28 -11.70 7.11 99.48 0.71 -10.99 15 5 H -0.27 -11.46 7.11 99.48 0.71 -10.76 15 6 H -0.28 -12.51 7.11 99.48 0.71 -11.81 15 7 C -0.59 -32.24 8.24 25.60 0.21 -32.03 15 8 H 0.04 2.17 7.82 -2.91 -0.02 2.15 15 9 C 0.05 2.59 2.38 -11.62 -0.03 2.56 15 10 H 0.01 0.65 7.09 -2.39 -0.02 0.63 15 11 C -0.11 -4.94 6.46 31.51 0.20 -4.74 15 12 C -0.06 -2.20 6.76 30.52 0.21 -1.99 15 13 C -0.10 -3.87 6.14 -19.54 -0.12 -3.99 15 14 C -0.10 -3.18 9.82 22.32 0.22 -2.96 15 15 C -0.05 -1.54 6.32 22.30 0.14 -1.40 15 16 Cl -0.06 -1.60 28.96 -2.72 -0.08 -1.68 15 17 C -0.11 -3.39 9.83 22.26 0.22 -3.17 15 18 C -0.12 -4.40 10.03 22.25 0.22 -4.18 15 19 C -0.07 -3.19 5.44 -19.57 -0.11 -3.29 15 20 H 0.26 15.55 6.83 -92.71 -0.63 14.92 15 21 H 0.05 2.16 8.14 -2.38 -0.02 2.14 15 22 H 0.05 2.40 7.89 -2.39 -0.02 2.38 15 23 H 0.09 2.69 8.14 -2.39 -0.02 2.67 15 24 H 0.07 2.71 8.14 -2.39 -0.02 2.69 15 25 H 0.15 3.82 8.06 -2.91 -0.02 3.80 15 26 H 0.15 3.87 8.06 -2.91 -0.02 3.85 15 27 H 0.12 4.58 8.06 -2.91 -0.02 4.55 15 Total: -1.00 -60.28 248.87 5.19 -55.08 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: 1.30 Total: 6.24 kcal Atomic # 6 Polarization: -57.70 SS G_CDS: 1.63 Total: -56.07 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: 0.29 Total: -55.20 kcal Atomic # 14 Polarization: 49.57 SS G_CDS: 2.05 Total: 51.62 kcal Atomic # 17 Polarization: -1.60 SS G_CDS: -0.08 Total: -1.68 kcal Total: -60.28 5.19 -55.08 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238532905.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.311 kcal (2) G-P(sol) polarization free energy of solvation -60.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds