Wall clock time and date at job start Mon Mar 30 2020 03:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86795 * 120.00088 * 2 1 4 4 H 1.48505 * 109.47022 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47126 * 299.99824 * 3 2 1 6 6 H 1.48498 * 109.47130 * 60.00327 * 3 2 1 7 7 C 1.39947 * 119.99908 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00002 * 197.88739 * 7 2 1 9 9 C 1.41398 * 120.00013 * 17.87892 * 7 2 1 10 10 C 1.40715 * 120.23660 * 24.37673 * 9 7 2 11 11 C 1.37719 * 119.72923 * 180.02562 * 10 9 7 12 12 Cl 1.73607 * 119.88483 * 179.97438 * 11 10 9 13 13 C 1.38767 * 120.22411 * 359.74945 * 11 10 9 14 14 C 1.38590 * 120.48969 * 0.51101 * 13 11 10 15 15 C 1.50702 * 119.87422 * 179.76021 * 14 13 11 16 16 C 1.52998 * 117.49928 * 299.72891 * 15 14 13 17 17 C 1.53001 * 60.03109 * 107.49536 * 16 15 14 18 18 C 1.37643 * 120.26164 * 359.48923 * 14 13 11 19 19 H 0.96999 * 120.00068 * 0.02562 * 1 2 3 20 20 H 1.07988 * 120.13374 * 0.02562 * 10 9 7 21 21 H 1.08006 * 119.75772 * 180.27603 * 13 11 10 22 22 H 1.09002 * 115.56009 * 154.03600 * 15 14 13 23 23 H 1.09004 * 117.49738 * 359.97438 * 16 15 14 24 24 H 1.08996 * 117.49480 * 214.99732 * 16 15 14 25 25 H 1.09004 * 117.49769 * 107.47683 * 17 16 15 26 26 H 1.08999 * 117.50113 * 252.46977 * 17 16 15 27 27 H 1.07998 * 120.12308 * 180.27359 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7023 1.3463 -0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8836 2.3963 1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0487 -1.2347 0.2867 9 6 1.3521 -2.4068 -0.3770 10 6 0.2211 -2.3612 -1.2129 11 6 -0.4099 -3.5313 -1.5727 12 17 -1.8060 -3.4797 -2.6032 13 6 0.0693 -4.7516 -1.1180 14 6 1.1793 -4.8069 -0.2900 15 6 1.6847 -6.1394 0.2000 16 6 0.7293 -6.9932 1.0361 17 6 1.0567 -7.3987 -0.4024 18 6 1.8254 -3.6499 0.0820 19 1 -0.4850 0.8400 -0.0004 20 1 -0.1506 -1.4126 -1.5708 21 1 -0.4287 -5.6650 -1.4084 22 1 2.7445 -6.1767 0.4520 23 1 -0.2647 -6.5910 1.2321 24 1 1.1606 -7.5920 1.8383 25 1 1.7037 -8.2640 -0.5465 26 1 0.2780 -7.2638 -1.1530 27 1 2.6929 -3.6958 0.7238 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238536469.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:20 Heat of formation + Delta-G solvation = 20.288652 kcal Electronic energy + Delta-G solvation = -12416.198895 eV Core-core repulsion = 10164.601314 eV Total energy + Delta-G solvation = -2251.597581 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.051 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.39013 -36.22500 -35.30495 -33.44415 -29.77560 -29.18116 -25.43800 -22.80004 -22.02873 -20.77227 -19.60588 -17.11888 -15.77406 -15.30846 -14.65156 -14.05876 -13.63371 -13.33074 -12.79760 -12.23509 -11.72329 -11.43346 -11.22070 -11.14170 -10.90855 -10.83969 -10.52683 -10.38097 -9.99741 -9.76207 -9.68558 -9.50640 -9.15129 -7.51522 -7.28271 -6.85199 -4.48147 2.62245 2.70135 3.03764 3.07799 3.10374 3.32170 3.86951 4.25912 4.58435 5.16623 5.37173 5.39091 5.65139 5.87301 5.95112 6.18867 6.30427 6.47982 6.55782 6.69932 6.91987 7.00791 7.17454 7.30271 7.67967 7.81382 7.88815 8.08654 8.43348 8.75655 8.77619 10.08550 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.027433 B = 0.009387 C = 0.007280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.412495 B = 2982.214641 C = 3844.993535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.075 3.925 3 Si 0.909 3.091 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.458 4.458 8 H 0.082 0.918 9 C 0.118 3.882 10 C -0.159 4.159 11 C -0.001 4.001 12 Cl -0.126 7.126 13 C -0.235 4.235 14 C -0.022 4.022 15 C -0.099 4.099 16 C -0.176 4.176 17 C -0.184 4.184 18 C -0.214 4.214 19 H 0.283 0.717 20 H 0.129 0.871 21 H 0.100 0.900 22 H 0.103 0.897 23 H 0.094 0.906 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.097 0.903 27 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.910 -5.201 -0.453 5.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.487 4.487 8 H 0.100 0.900 9 C 0.115 3.885 10 C -0.179 4.179 11 C -0.027 4.027 12 Cl -0.098 7.098 13 C -0.255 4.255 14 C -0.023 4.023 15 C -0.117 4.117 16 C -0.213 4.213 17 C -0.220 4.220 18 C -0.233 4.233 19 H 0.094 0.906 20 H 0.147 0.853 21 H 0.118 0.882 22 H 0.121 0.879 23 H 0.112 0.888 24 H 0.106 0.894 25 H 0.106 0.894 26 H 0.115 0.885 27 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.580 -5.029 -0.524 5.090 hybrid contribution 0.121 0.785 -0.027 0.795 sum 0.701 -4.245 -0.551 4.337 Atomic orbital electron populations 1.69817 1.07650 1.29515 1.34135 1.25954 0.94747 1.01533 0.92115 0.86240 0.81005 0.80745 0.78673 1.18275 1.19583 1.19894 1.19598 0.98283 0.90977 1.39802 0.89956 1.17466 0.90416 0.92284 0.88319 1.21268 0.99313 0.95866 1.01467 1.20657 0.89528 0.95653 0.96893 1.98252 1.44150 1.99010 1.68376 1.20024 1.01928 0.94835 1.08715 1.18473 0.95008 0.91986 0.96813 1.21002 0.97491 0.89862 1.03364 1.22941 1.01057 1.03503 0.93761 1.23010 1.04065 0.98261 0.96712 1.20841 1.03952 0.91915 1.06626 0.90613 0.85316 0.88184 0.87916 0.88789 0.89358 0.89398 0.88473 0.88388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.03 10.95 55.55 0.61 -19.42 15 2 C 0.08 1.85 5.14 -17.34 -0.09 1.76 15 3 Si 0.91 18.22 29.59 -169.99 -5.03 13.19 15 4 H -0.26 -5.12 7.11 56.52 0.40 -4.72 15 5 H -0.27 -5.36 7.11 56.52 0.40 -4.96 15 6 H -0.27 -5.40 7.11 56.52 0.40 -4.99 15 7 C -0.46 -11.79 9.05 -37.74 -0.34 -12.14 15 8 H 0.08 2.03 7.91 -52.49 -0.42 1.61 15 9 C 0.12 3.08 5.58 -106.82 -0.60 2.48 15 10 C -0.16 -4.12 8.47 -38.84 -0.33 -4.44 15 11 C 0.00 -0.03 6.31 -39.58 -0.25 -0.28 15 12 Cl -0.13 -2.63 28.95 -51.86 -1.50 -4.14 15 13 C -0.24 -5.23 9.09 -39.26 -0.36 -5.59 15 14 C -0.02 -0.49 5.60 -104.71 -0.59 -1.07 15 15 C -0.10 -1.74 6.03 -91.73 -0.55 -2.29 15 16 C -0.18 -2.69 10.16 -26.73 -0.27 -2.96 15 17 C -0.18 -2.75 9.86 -26.69 -0.26 -3.02 15 18 C -0.21 -5.09 9.47 -38.86 -0.37 -5.46 15 19 H 0.28 6.54 8.30 -40.82 -0.34 6.20 15 20 H 0.13 3.47 6.16 -52.49 -0.32 3.15 15 21 H 0.10 2.04 5.99 -52.48 -0.31 1.72 15 22 H 0.10 1.67 8.14 -51.93 -0.42 1.25 15 23 H 0.09 1.53 8.14 -51.93 -0.42 1.11 15 24 H 0.09 1.15 8.14 -51.93 -0.42 0.73 15 25 H 0.09 1.12 8.14 -51.93 -0.42 0.69 15 26 H 0.10 1.51 6.16 -51.93 -0.32 1.19 15 27 H 0.10 2.19 8.06 -52.49 -0.42 1.77 15 LS Contribution 250.73 15.07 3.78 3.78 Total: -1.00 -26.11 250.73 -8.77 -34.88 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -2.62 Total: 4.73 kcal Atomic # 6 Polarization: -29.00 SS G_CDS: -4.01 Total: -33.01 kcal Atomic # 7 Polarization: -20.03 SS G_CDS: 0.61 Total: -19.42 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.03 Total: 13.19 kcal Atomic # 17 Polarization: -2.63 SS G_CDS: -1.50 Total: -4.14 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -26.11 -8.77 -34.88 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238536469.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.165 kcal (2) G-P(sol) polarization free energy of solvation -26.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds