Wall clock time and date at job start Mon Mar 30 2020 02:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99945 * 2 1 4 4 H 1.48501 * 109.46810 * 269.99998 * 3 2 1 5 5 H 1.48501 * 109.47373 * 29.99791 * 3 2 1 6 6 H 1.48492 * 109.47176 * 150.00051 * 3 2 1 7 7 C 1.37871 * 119.99798 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00126 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99929 * 179.97438 * 7 2 1 10 10 H 1.09002 * 110.05626 * 300.70261 * 9 7 2 11 11 O 1.45399 * 110.11786 * 62.22662 * 9 7 2 12 12 C 1.34358 * 109.01702 * 119.25545 * 11 9 7 13 13 O 1.21487 * 124.87796 * 180.02562 * 12 11 9 14 14 C 1.47245 * 110.24161 * 0.02562 * 12 11 9 15 15 C 1.39859 * 108.05526 * 359.97438 * 14 12 11 16 16 C 1.37416 * 120.32075 * 179.97438 * 15 14 12 17 17 C 1.38612 * 120.02718 * 359.97438 * 16 15 14 18 18 C 1.38207 * 120.26396 * 0.02562 * 17 16 15 19 19 C 1.38332 * 120.29555 * 359.97438 * 18 17 16 20 20 F 1.35108 * 120.14532 * 179.97438 * 19 18 17 21 21 H 0.97001 * 119.99774 * 0.02562 * 1 2 3 22 22 H 1.08012 * 119.98679 * 180.02562 * 16 15 14 23 23 H 1.08003 * 119.86854 * 179.97438 * 17 16 15 24 24 H 1.08004 * 119.85048 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8850 -0.6719 -0.8809 11 8 4.0121 -0.5571 1.2073 12 6 4.7458 -1.4451 1.8989 13 8 5.3002 -1.2155 2.9552 14 6 4.7815 -2.7365 1.1924 15 6 4.0294 -2.6102 0.0200 16 6 3.8949 -3.6766 -0.8362 17 6 4.5064 -4.8849 -0.5406 18 6 5.2525 -5.0238 0.6145 19 6 5.3959 -3.9583 1.4849 20 9 6.1255 -4.0975 2.6135 21 1 -0.4850 0.8401 -0.0004 22 1 3.3132 -3.5729 -1.7403 23 1 4.3987 -5.7214 -1.2151 24 1 5.7264 -5.9682 0.8380 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238552567.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:35 Heat of formation + Delta-G solvation = -110.079239 kcal Electronic energy + Delta-G solvation = -14651.738753 eV Core-core repulsion = 11830.318526 eV Total energy + Delta-G solvation = -2821.420227 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 222.048 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -50.07015 -42.37059 -39.25158 -38.27105 -34.97807 -32.93015 -31.79740 -29.84560 -25.55129 -25.10761 -23.14609 -21.79818 -19.50712 -18.64329 -18.45341 -17.63281 -17.32108 -16.75903 -16.61413 -16.37083 -15.81416 -15.08777 -14.95735 -14.39745 -14.01022 -13.64534 -13.32026 -13.08410 -12.83726 -12.81430 -12.08610 -12.00789 -11.38496 -11.23837 -10.90528 -10.16531 -9.76018 -8.52191 -6.72158 -0.53748 0.09637 1.31620 1.33644 1.42786 1.59189 2.24695 2.32441 2.52729 2.72626 3.06731 3.15974 3.31019 3.87995 3.96661 4.23204 4.52062 4.58907 4.84329 4.96025 5.04985 5.21093 5.32205 5.71913 5.83953 5.99556 6.37499 6.44535 7.05552 8.59461 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.036064 B = 0.010986 C = 0.009071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.217460 B = 2547.997121 C = 3085.952636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.047 3.953 3 Si 0.922 3.078 4 H -0.250 1.250 5 H -0.285 1.285 6 H -0.235 1.235 7 C -0.538 4.538 8 H 0.064 0.936 9 C 0.191 3.809 10 H 0.111 0.889 11 O -0.339 6.339 12 C 0.507 3.493 13 O -0.519 6.519 14 C -0.274 4.274 15 C -0.033 4.033 16 C -0.112 4.112 17 C -0.026 4.026 18 C -0.158 4.158 19 C 0.155 3.845 20 F -0.139 7.139 21 H 0.277 0.723 22 H 0.162 0.838 23 H 0.198 0.802 24 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.069 -9.814 -5.740 14.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.157 4.157 3 Si 0.745 3.255 4 H -0.174 1.174 5 H -0.211 1.211 6 H -0.159 1.159 7 C -0.574 4.574 8 H 0.082 0.918 9 C 0.138 3.862 10 H 0.128 0.872 11 O -0.254 6.254 12 C 0.353 3.647 13 O -0.411 6.411 14 C -0.277 4.277 15 C -0.034 4.034 16 C -0.130 4.130 17 C -0.043 4.043 18 C -0.177 4.177 19 C 0.135 3.865 20 F -0.117 7.117 21 H 0.086 0.914 22 H 0.180 0.820 23 H 0.215 0.785 24 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 9.115 -9.377 -5.198 14.072 hybrid contribution -0.062 1.135 0.767 1.371 sum 9.053 -8.242 -4.431 13.020 Atomic orbital electron populations 1.69965 1.08044 1.29295 1.47305 1.25794 0.95425 1.03051 0.91459 0.86137 0.80819 0.78561 0.80031 1.17386 1.21060 1.15888 1.20956 0.87630 0.94762 1.54038 0.91833 1.20464 0.94564 0.87944 0.83181 0.87181 1.87732 1.60517 1.39749 1.37437 1.21002 0.75510 0.84940 0.83221 1.90730 1.45607 1.83231 1.21555 1.21015 1.09240 0.95815 1.01610 1.20966 0.92221 0.97027 0.93184 1.20858 1.00669 0.90874 1.00564 1.21838 0.90318 0.97281 0.94891 1.21548 1.03175 0.98253 0.94676 1.17857 0.91789 0.92903 0.83954 1.91498 1.74661 1.96143 1.49433 0.91372 0.82027 0.78471 0.79864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.45 13.96 21.45 0.30 -52.16 14 2 C 0.05 2.56 5.47 84.65 0.46 3.02 14 3 Si 0.92 42.06 27.03 68.60 1.85 43.91 14 4 H -0.25 -10.33 7.11 99.48 0.71 -9.62 14 5 H -0.28 -13.09 7.11 99.48 0.71 -12.38 14 6 H -0.24 -10.96 5.40 99.48 0.54 -10.43 14 7 C -0.54 -28.25 9.40 25.60 0.24 -28.01 14 8 H 0.06 3.59 8.00 -2.91 -0.02 3.57 14 9 C 0.19 8.52 2.91 29.13 0.08 8.61 14 10 H 0.11 4.40 7.56 -2.39 -0.02 4.38 14 11 O -0.34 -16.98 7.89 -53.02 -0.42 -17.40 14 12 C 0.51 24.76 8.58 70.19 0.60 25.36 14 13 O -0.52 -27.53 18.04 19.57 0.35 -27.18 14 14 C -0.27 -11.07 6.26 -20.13 -0.13 -11.20 14 15 C -0.03 -1.24 5.62 -19.63 -0.11 -1.35 14 16 C -0.11 -2.98 10.03 22.16 0.22 -2.75 14 17 C -0.03 -0.48 10.05 22.35 0.22 -0.25 14 18 C -0.16 -3.42 10.01 22.28 0.22 -3.20 14 19 C 0.15 5.11 7.36 22.68 0.17 5.28 14 20 F -0.14 -4.94 17.28 44.97 0.78 -4.16 14 21 H 0.28 14.89 8.31 -92.71 -0.77 14.12 14 22 H 0.16 3.65 8.06 -2.90 -0.02 3.63 14 23 H 0.20 1.53 8.06 -2.91 -0.02 1.50 14 24 H 0.18 2.45 8.06 -2.91 -0.02 2.42 14 Total: -1.00 -70.21 227.52 5.92 -64.29 By element: Atomic # 1 Polarization: -3.88 SS G_CDS: 1.07 Total: -2.81 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: 1.99 Total: -4.49 kcal Atomic # 7 Polarization: -52.45 SS G_CDS: 0.30 Total: -52.16 kcal Atomic # 8 Polarization: -44.51 SS G_CDS: -0.07 Total: -44.57 kcal Atomic # 9 Polarization: -4.94 SS G_CDS: 0.78 Total: -4.16 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 1.85 Total: 43.91 kcal Total: -70.21 5.92 -64.29 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238552567.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.789 kcal (2) G-P(sol) polarization free energy of solvation -70.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds