Wall clock time and date at job start Mon Mar 30 2020 02:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86791 * 119.99477 * 2 1 4 4 H 1.48504 * 109.47221 * 239.99984 * 3 2 1 5 5 H 1.48503 * 109.47714 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47164 * 120.00215 * 3 2 1 7 7 C 1.37876 * 120.00234 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00020 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99834 * 359.97438 * 7 2 1 10 10 H 1.09002 * 110.05626 * 59.29908 * 9 7 2 11 11 O 1.45399 * 110.07194 * 297.80532 * 9 7 2 12 12 C 1.34356 * 109.01460 * 240.71199 * 11 9 7 13 13 O 1.21492 * 124.87675 * 179.97438 * 12 11 9 14 14 C 1.47248 * 110.24293 * 0.02562 * 12 11 9 15 15 C 1.39856 * 108.05746 * 359.97438 * 14 12 11 16 16 C 1.37408 * 120.32403 * 179.97438 * 15 14 12 17 17 C 1.38622 * 120.02424 * 0.02562 * 16 15 14 18 18 C 1.38204 * 120.26442 * 0.02562 * 17 16 15 19 19 C 1.38336 * 120.29603 * 359.97438 * 18 17 16 20 20 F 1.35102 * 120.14482 * 179.97438 * 19 18 17 21 21 H 0.96999 * 120.00212 * 359.97438 * 1 2 3 22 22 H 1.08002 * 119.99297 * 180.02562 * 16 15 14 23 23 H 1.07999 * 119.86381 * 180.02562 * 17 16 15 24 24 H 1.07998 * 119.85301 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6112 -2.5613 -0.8807 11 8 0.4504 -2.6131 1.2077 12 6 0.8525 -3.6926 1.8992 13 8 0.3773 -4.0572 2.9562 14 6 1.9525 -4.3697 1.1924 15 6 2.2183 -3.6561 0.0193 16 6 3.2090 -4.0728 -0.8369 17 6 3.9507 -5.2057 -0.5404 18 6 3.6981 -5.9210 0.6148 19 6 2.7036 -5.5124 1.4853 20 9 2.4589 -6.2143 2.6134 21 1 -0.4850 0.8400 0.0004 22 1 3.4099 -3.5174 -1.7411 23 1 4.7290 -5.5307 -1.2149 24 1 4.2797 -6.8030 0.8390 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238552735.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:37 Heat of formation + Delta-G solvation = -116.074923 kcal Electronic energy + Delta-G solvation = -14587.044165 eV Core-core repulsion = 11765.363946 eV Total energy + Delta-G solvation = -2821.680219 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 222.048 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -50.05651 -42.23287 -39.19415 -38.13448 -34.94281 -32.80756 -31.70217 -29.35209 -25.75213 -25.08351 -23.07500 -21.78654 -19.27588 -18.55494 -18.25372 -17.56416 -17.17728 -16.69906 -16.62875 -16.40761 -15.73223 -14.91926 -14.63183 -14.52800 -13.98051 -13.39376 -13.19650 -12.99577 -12.79537 -12.72047 -12.36256 -11.80939 -11.30252 -11.20914 -10.84221 -10.13987 -9.74320 -8.35951 -6.64757 -0.49726 0.12530 1.41806 1.44998 1.48287 1.54115 2.31637 2.41398 2.58038 2.80630 3.10244 3.27144 3.41378 3.92237 4.01893 4.25695 4.55761 4.80284 4.93581 4.98696 5.22323 5.32518 5.51822 5.64601 5.78861 6.07445 6.44758 6.56019 7.15720 8.70865 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.035106 B = 0.010032 C = 0.008482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.400647 B = 2790.497610 C = 3300.441985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.028 3.972 3 Si 0.977 3.023 4 H -0.248 1.248 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.557 4.557 8 H 0.086 0.914 9 C 0.220 3.780 10 H 0.079 0.921 11 O -0.329 6.329 12 C 0.500 3.500 13 O -0.529 6.529 14 C -0.277 4.277 15 C -0.038 4.038 16 C -0.113 4.113 17 C -0.025 4.025 18 C -0.160 4.160 19 C 0.153 3.847 20 F -0.140 7.140 21 H 0.273 0.727 22 H 0.164 0.836 23 H 0.200 0.800 24 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.898 -8.319 -5.901 14.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.177 4.177 3 Si 0.800 3.200 4 H -0.172 1.172 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.593 4.593 8 H 0.104 0.896 9 C 0.168 3.832 10 H 0.096 0.904 11 O -0.243 6.243 12 C 0.347 3.653 13 O -0.423 6.423 14 C -0.279 4.279 15 C -0.038 4.038 16 C -0.130 4.130 17 C -0.042 4.042 18 C -0.178 4.178 19 C 0.133 3.867 20 F -0.119 7.119 21 H 0.082 0.918 22 H 0.182 0.818 23 H 0.217 0.783 24 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 10.321 -8.231 -5.376 14.254 hybrid contribution -0.540 0.871 0.770 1.282 sum 9.781 -7.361 -4.606 13.079 Atomic orbital electron populations 1.70125 1.08094 1.29033 1.45635 1.26124 0.95700 1.03883 0.92005 0.85328 0.78253 0.76793 0.79669 1.17212 1.20774 1.19902 1.21335 0.93850 0.88945 1.55152 0.89626 1.20087 0.87770 0.93066 0.82271 0.90354 1.87623 1.57879 1.41632 1.37184 1.21107 0.81158 0.79654 0.83400 1.90701 1.61799 1.67794 1.21956 1.21045 1.03774 1.01318 1.01782 1.21281 0.96145 0.93429 0.92976 1.20851 0.93761 0.98043 1.00389 1.21848 0.96852 0.90762 0.94784 1.21538 0.97529 1.03966 0.94760 1.17891 0.96005 0.88743 0.84013 1.91488 1.93605 1.77219 1.49569 0.91828 0.81804 0.78280 0.79852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.98 12.96 21.45 0.28 -50.70 14 2 C 0.03 1.48 5.42 84.65 0.46 1.94 14 3 Si 0.98 40.54 29.54 68.60 2.03 42.57 14 4 H -0.25 -9.36 7.11 99.48 0.71 -8.66 14 5 H -0.28 -11.63 7.11 99.48 0.71 -10.92 14 6 H -0.27 -11.37 7.11 99.48 0.71 -10.66 14 7 C -0.56 -28.71 8.82 25.60 0.23 -28.48 14 8 H 0.09 4.11 7.76 -2.91 -0.02 4.08 14 9 C 0.22 10.99 3.47 29.14 0.10 11.09 14 10 H 0.08 3.99 8.14 -2.39 -0.02 3.97 14 11 O -0.33 -18.87 10.38 -53.00 -0.55 -19.42 14 12 C 0.50 26.76 8.58 70.19 0.60 27.36 14 13 O -0.53 -30.40 18.04 19.56 0.35 -30.05 14 14 C -0.28 -11.94 6.26 -20.13 -0.13 -12.07 14 15 C -0.04 -1.49 5.62 -19.63 -0.11 -1.60 14 16 C -0.11 -3.07 10.03 22.17 0.22 -2.85 14 17 C -0.03 -0.47 10.05 22.35 0.22 -0.25 14 18 C -0.16 -3.60 10.01 22.28 0.22 -3.38 14 19 C 0.15 5.34 7.36 22.68 0.17 5.51 14 20 F -0.14 -5.25 17.28 44.97 0.78 -4.48 14 21 H 0.27 14.63 8.31 -92.71 -0.77 13.86 14 22 H 0.16 3.66 8.06 -2.91 -0.02 3.64 14 23 H 0.20 1.50 8.06 -2.91 -0.02 1.48 14 24 H 0.18 2.57 8.06 -2.91 -0.02 2.55 14 Total: -1.00 -71.58 233.49 6.11 -65.47 By element: Atomic # 1 Polarization: -1.90 SS G_CDS: 1.24 Total: -0.66 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: 1.99 Total: -2.73 kcal Atomic # 7 Polarization: -50.98 SS G_CDS: 0.28 Total: -50.70 kcal Atomic # 8 Polarization: -49.27 SS G_CDS: -0.20 Total: -49.47 kcal Atomic # 9 Polarization: -5.25 SS G_CDS: 0.78 Total: -4.48 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.57 kcal Total: -71.58 6.11 -65.47 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238552735.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.604 kcal (2) G-P(sol) polarization free energy of solvation -71.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds