Wall clock time and date at job start Mon Mar 30 2020 03:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30863 * 1 3 3 Si 1.86797 * 120.00592 * 2 1 4 4 H 1.48501 * 109.46919 * 90.00281 * 3 2 1 5 5 H 1.48496 * 109.47504 * 210.00258 * 3 2 1 6 6 H 1.48497 * 109.46982 * 330.00365 * 3 2 1 7 7 C 1.39945 * 119.99437 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00282 * 17.09538 * 7 2 1 9 9 C 1.41053 * 119.99853 * 197.09043 * 7 2 1 10 10 C 1.40738 * 120.30377 * 29.87561 * 9 7 2 11 11 C 1.36455 * 119.94533 * 179.97438 * 10 9 7 12 12 C 1.38882 * 120.58708 * 0.02562 * 11 10 9 13 13 C 1.38199 * 120.61794 * 359.97438 * 12 11 10 14 14 C 1.38684 * 120.03055 * 359.75167 * 13 12 11 15 15 N 1.39027 * 120.28990 * 180.25490 * 14 13 12 16 16 C 1.34776 * 119.99805 * 39.76144 * 15 14 13 17 17 N 1.34781 * 120.00005 * 182.68594 * 16 15 14 18 18 S 1.71205 * 120.00075 * 2.68561 * 16 15 14 19 19 H 0.96988 * 120.00790 * 174.87538 * 1 2 3 20 20 H 1.08002 * 120.02641 * 359.95485 * 10 9 7 21 21 H 1.08003 * 119.70653 * 179.97438 * 11 10 9 22 22 H 1.07997 * 119.69040 * 179.97438 * 12 11 10 23 23 H 1.07998 * 119.98450 * 180.02562 * 13 12 11 24 24 H 0.96996 * 120.00117 * 219.76853 * 15 14 13 25 25 H 0.97000 * 119.99481 * 359.97438 * 17 16 15 26 26 H 0.96994 * 119.99694 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2428 1.6176 0.0000 4 1 2.4904 2.0462 1.4001 5 1 3.5403 1.4400 -0.7001 6 1 1.4403 2.6526 -0.7000 7 6 2.0082 -1.2120 -0.0005 8 1 1.5040 -2.1265 -0.2759 9 6 3.3720 -1.2393 0.3584 10 6 3.8845 -0.3002 1.2729 11 6 5.2050 -0.3336 1.6155 12 6 6.0530 -1.2880 1.0688 13 6 5.5750 -2.2213 0.1686 14 6 4.2362 -2.2144 -0.1932 15 7 3.7485 -3.1542 -1.0943 16 6 4.1761 -4.4309 -1.0339 17 7 3.7448 -5.3296 -1.9410 18 16 5.2672 -4.9110 0.1949 19 1 -0.4851 -0.8365 -0.0750 20 1 3.2333 0.4463 1.7030 21 1 5.5943 0.3891 2.3173 22 1 7.0957 -1.3009 1.3497 23 1 6.2434 -2.9592 -0.2499 24 1 3.1006 -2.8910 -1.7664 25 1 3.1263 -5.0576 -2.6369 26 1 4.0522 -6.2485 -1.8973 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238579647.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:37 Heat of formation + Delta-G solvation = 9.934922 kcal Electronic energy + Delta-G solvation = -12760.566525 eV Core-core repulsion = 10542.856430 eV Total energy + Delta-G solvation = -2217.710095 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.052 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.82067 -38.61177 -35.69858 -35.12657 -32.19116 -30.23980 -26.67630 -25.44309 -23.02907 -22.53741 -20.16552 -19.61680 -19.21403 -17.48041 -16.67611 -16.32405 -16.17302 -15.76382 -14.89935 -14.67515 -14.37220 -13.92718 -13.30509 -12.69542 -12.40522 -12.32521 -12.23278 -11.65651 -11.39733 -11.12611 -10.85025 -9.71565 -9.43008 -9.22958 -8.89543 -8.20259 -6.59417 0.11080 0.82687 0.90835 1.08362 1.42791 1.58382 1.79432 1.91054 2.19793 2.65915 2.88838 3.48757 4.36342 4.48254 4.63740 4.92983 5.01146 5.10289 5.31217 5.41958 5.57408 5.71575 5.85787 6.01913 6.06793 6.23781 6.37143 6.46793 6.66164 6.79936 7.98916 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.032164 B = 0.011221 C = 0.008844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.338453 B = 2494.622516 C = 3165.135071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.017 3.983 3 Si 1.102 2.898 4 H -0.261 1.261 5 H -0.258 1.258 6 H -0.285 1.285 7 C -0.540 4.540 8 H 0.054 0.946 9 C 0.084 3.916 10 C -0.250 4.250 11 C -0.071 4.071 12 C -0.228 4.228 13 C -0.034 4.034 14 C -0.016 4.016 15 N -0.575 5.575 16 C 0.578 3.422 17 N -0.776 5.776 18 S -0.741 6.741 19 H 0.278 0.722 20 H 0.110 0.890 21 H 0.132 0.868 22 H 0.126 0.874 23 H 0.127 0.873 24 H 0.413 0.587 25 H 0.416 0.584 26 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.358 -2.128 -6.251 7.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.198 4.198 3 Si 0.924 3.076 4 H -0.187 1.187 5 H -0.182 1.182 6 H -0.212 1.212 7 C -0.570 4.570 8 H 0.073 0.927 9 C 0.079 3.921 10 C -0.270 4.270 11 C -0.090 4.090 12 C -0.249 4.249 13 C -0.057 4.057 14 C -0.111 4.111 15 N -0.195 5.195 16 C 0.211 3.789 17 N -0.323 5.323 18 S -0.615 6.615 19 H 0.089 0.911 20 H 0.127 0.873 21 H 0.150 0.850 22 H 0.144 0.856 23 H 0.145 0.855 24 H 0.253 0.747 25 H 0.250 0.750 26 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 4.712 -0.798 -5.410 7.219 hybrid contribution -1.417 -2.060 -1.058 2.715 sum 3.294 -2.859 -6.469 7.802 Atomic orbital electron populations 1.70630 1.08582 1.32638 1.34588 1.28194 0.95633 1.06645 0.89284 0.83220 0.74842 0.70623 0.78962 1.18683 1.18175 1.21184 1.20347 0.95406 0.96077 1.45145 0.92747 1.17703 0.92264 0.92195 0.89906 1.20898 0.97012 1.04730 1.04363 1.20840 0.92969 0.97424 0.97733 1.20716 1.00030 0.99488 1.04626 1.21184 0.93373 0.94981 0.96115 1.17549 0.92728 0.98006 1.02847 1.41650 1.41005 1.04901 1.31975 1.21773 0.86446 0.82761 0.87905 1.42551 1.48077 1.12586 1.29084 1.93438 1.44685 1.84903 1.38491 0.91095 0.87250 0.84995 0.85617 0.85484 0.74685 0.74978 0.72382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -43.51 13.66 21.83 0.30 -43.21 15 2 C 0.02 0.84 5.42 85.25 0.46 1.31 15 3 Si 1.10 45.53 24.91 68.60 1.71 47.23 15 4 H -0.26 -10.15 6.45 99.48 0.64 -9.51 15 5 H -0.26 -10.36 7.03 99.48 0.70 -9.67 15 6 H -0.28 -11.39 7.11 99.48 0.71 -10.68 15 7 C -0.54 -27.06 8.75 23.37 0.20 -26.85 15 8 H 0.05 2.82 7.73 -2.91 -0.02 2.80 15 9 C 0.08 4.01 5.13 -21.18 -0.11 3.91 15 10 C -0.25 -11.32 7.21 22.46 0.16 -11.15 15 11 C -0.07 -2.85 9.97 22.01 0.22 -2.63 15 12 C -0.23 -9.16 10.04 22.41 0.22 -8.93 15 13 C -0.03 -1.48 7.83 22.37 0.18 -1.30 15 14 C -0.02 -0.73 6.03 38.91 0.23 -0.49 15 15 N -0.58 -20.92 4.82 -188.76 -0.91 -21.83 15 16 C 0.58 19.40 7.94 179.05 1.42 20.82 15 17 N -0.78 -15.94 8.87 -59.11 -0.52 -16.46 15 18 S -0.74 -32.05 26.26 -56.49 -1.48 -33.54 15 19 H 0.28 14.23 8.73 -92.72 -0.81 13.43 15 20 H 0.11 4.86 4.50 -2.91 -0.01 4.85 15 21 H 0.13 4.30 8.06 -2.91 -0.02 4.28 15 22 H 0.13 4.34 8.06 -2.91 -0.02 4.32 15 23 H 0.13 5.46 5.87 -11.30 -0.07 5.39 15 24 H 0.41 13.11 8.25 -92.71 -0.77 12.35 15 25 H 0.42 5.55 8.85 -92.71 -0.82 4.73 15 26 H 0.44 7.59 8.81 -92.71 -0.82 6.78 15 Total: -1.00 -64.84 236.28 0.77 -64.06 By element: Atomic # 1 Polarization: 30.38 SS G_CDS: -1.31 Total: 29.07 kcal Atomic # 6 Polarization: -28.33 SS G_CDS: 3.00 Total: -25.33 kcal Atomic # 7 Polarization: -80.36 SS G_CDS: -1.14 Total: -81.50 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 1.71 Total: 47.23 kcal Atomic # 16 Polarization: -32.05 SS G_CDS: -1.48 Total: -33.54 kcal Total: -64.84 0.77 -64.06 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238579647.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.998 kcal (2) G-P(sol) polarization free energy of solvation -64.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds