Wall clock time and date at job start Mon Mar 30 2020 02:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30903 * 1 3 3 Si 1.86802 * 119.99821 * 2 1 4 4 H 1.48496 * 109.47101 * 240.00001 * 3 2 1 5 5 H 1.48506 * 109.47197 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47277 * 119.99746 * 3 2 1 7 7 C 1.39846 * 120.00218 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00060 * 198.04838 * 7 2 1 9 9 C 1.41260 * 120.00140 * 18.04318 * 7 2 1 10 10 C 1.39948 * 120.04686 * 24.86893 * 9 7 2 11 11 C 1.40552 * 120.02720 * 180.02562 * 10 9 7 12 12 C 1.45569 * 129.17869 * 179.97438 * 11 10 9 13 13 C 1.31713 * 114.88786 * 180.02562 * 12 11 10 14 14 S 1.75262 * 111.50695 * 359.97438 * 13 12 11 15 15 C 1.40115 * 119.03992 * 359.97438 * 11 10 9 16 16 C 1.40643 * 120.16392 * 0.02562 * 15 11 10 17 17 F 1.35097 * 119.61091 * 180.02562 * 16 15 11 18 18 C 1.35894 * 120.78327 * 359.97438 * 16 15 11 19 19 H 0.96999 * 120.00306 * 0.02562 * 1 2 3 20 20 H 1.08003 * 119.99254 * 0.04906 * 10 9 7 21 21 H 1.08005 * 122.55332 * 0.03632 * 12 11 10 22 22 H 1.07994 * 124.24279 * 179.97438 * 13 12 11 23 23 H 1.07996 * 119.95929 * 180.28188 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 3.0967 1.6965 -1.2125 5 1 1.2779 2.7465 -0.0006 6 1 3.0967 1.6965 1.2125 7 6 2.0083 -1.2111 0.0005 8 1 3.0485 -1.2339 0.2903 9 6 1.3542 -2.4046 -0.3778 10 6 0.2379 -2.3550 -1.2204 11 6 -0.4130 -3.5427 -1.5962 12 6 -1.5767 -3.7225 -2.4520 13 6 -1.9555 -4.9731 -2.6171 14 16 -0.9203 -6.0796 -1.7363 15 6 0.0731 -4.7659 -1.1159 16 6 1.1962 -4.7969 -0.2699 17 9 1.6558 -5.9826 0.1862 18 6 1.8253 -3.6484 0.0932 19 1 -0.4850 0.8400 -0.0004 20 1 -0.1235 -1.4038 -1.5824 21 1 -2.0903 -2.8935 -2.9163 22 1 -2.7981 -5.2784 -3.2196 23 1 2.6894 -3.6880 0.7398 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238587487.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:41 Heat of formation + Delta-G solvation = -31.266691 kcal Electronic energy + Delta-G solvation = -12243.857278 eV Core-core repulsion = 9868.607491 eV Total energy + Delta-G solvation = -2375.249787 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 222.021 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -49.77823 -39.76556 -36.59714 -34.81767 -31.22588 -30.16398 -27.50100 -24.03686 -23.29705 -21.48313 -19.39232 -18.57643 -17.26436 -16.97403 -16.63492 -16.50313 -15.75417 -15.22562 -14.93683 -14.01269 -13.97861 -13.64460 -13.13751 -12.84797 -12.79749 -12.51503 -12.10842 -11.82758 -11.74130 -11.43363 -10.96754 -10.10047 -9.36794 -8.75322 -8.49458 -6.42915 0.08087 0.59884 0.88504 1.29115 1.38840 1.42742 1.53582 1.65518 2.18701 2.56773 3.44179 3.54612 3.96766 4.31438 4.50394 4.78580 4.83594 5.01632 5.16459 5.19471 5.27965 5.55801 5.72246 5.91022 6.05504 6.47220 6.74537 6.75815 8.21882 Molecular weight = 222.02amu Principal moments of inertia in cm(-1) A = 0.041577 B = 0.009130 C = 0.007646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.282251 B = 3066.226500 C = 3661.055836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.038 3.962 3 Si 0.988 3.012 4 H -0.259 1.259 5 H -0.266 1.266 6 H -0.258 1.258 7 C -0.479 4.479 8 H 0.088 0.912 9 C 0.100 3.900 10 C -0.174 4.174 11 C -0.042 4.042 12 C -0.135 4.135 13 C -0.171 4.171 14 S 0.037 5.963 15 C -0.300 4.300 16 C 0.135 3.865 17 F -0.156 7.156 18 C -0.235 4.235 19 H 0.295 0.705 20 H 0.119 0.881 21 H 0.158 0.842 22 H 0.201 0.799 23 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.214 -1.597 -3.640 4.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.180 4.180 3 Si 0.808 3.192 4 H -0.183 1.183 5 H -0.190 1.190 6 H -0.182 1.182 7 C -0.508 4.508 8 H 0.106 0.894 9 C 0.096 3.904 10 C -0.196 4.196 11 C -0.048 4.048 12 C -0.166 4.166 13 C -0.304 4.304 14 S 0.295 5.705 15 C -0.414 4.414 16 C 0.112 3.888 17 F -0.135 7.135 18 C -0.256 4.256 19 H 0.106 0.894 20 H 0.137 0.863 21 H 0.175 0.825 22 H 0.218 0.782 23 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.445 -3.057 -3.472 5.232 hybrid contribution 0.449 1.867 0.221 1.932 sum -1.996 -1.190 -3.251 3.996 Atomic orbital electron populations 1.69875 1.09103 1.31405 1.33009 1.26827 0.95528 1.04711 0.90903 0.85148 0.78756 0.75027 0.80257 1.18287 1.19012 1.18218 1.19843 0.98875 0.91784 1.40255 0.89371 1.17498 0.91681 0.92062 0.89134 1.21205 1.00250 0.95573 1.02580 1.19438 0.95747 0.92329 0.97281 1.21162 0.96470 0.98374 1.00560 1.25244 1.04624 0.95423 1.05127 1.83321 1.26716 1.08982 1.51470 1.22235 1.06036 0.98334 1.14801 1.16626 0.94359 0.80399 0.97438 1.91364 1.88480 1.45849 1.87819 1.20876 1.05207 0.91602 1.07938 0.89424 0.86295 0.82494 0.78163 0.85819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.65 10.98 21.81 0.24 -39.41 14 2 C 0.04 1.78 5.12 85.22 0.44 2.21 14 3 Si 0.99 35.33 29.60 68.60 2.03 37.36 14 4 H -0.26 -9.08 7.11 99.48 0.71 -8.37 14 5 H -0.27 -8.97 7.11 99.48 0.71 -8.26 14 6 H -0.26 -8.95 7.11 99.48 0.71 -8.25 14 7 C -0.48 -24.37 9.03 23.40 0.21 -24.16 14 8 H 0.09 4.24 7.91 -2.91 -0.02 4.22 14 9 C 0.10 5.30 5.56 -21.42 -0.12 5.18 14 10 C -0.17 -8.96 8.75 23.25 0.20 -8.75 14 11 C -0.04 -1.96 6.03 -20.37 -0.12 -2.09 14 12 C -0.13 -5.06 10.39 23.46 0.24 -4.82 14 13 C -0.17 -5.51 11.01 67.12 0.74 -4.77 14 14 S 0.04 1.38 23.23 -56.49 -1.31 0.07 14 15 C -0.30 -14.08 6.49 23.31 0.15 -13.93 14 16 C 0.14 6.59 7.26 22.31 0.16 6.75 14 17 F -0.16 -7.15 17.25 44.97 0.78 -6.37 14 18 C -0.23 -11.77 9.67 22.43 0.22 -11.55 14 19 H 0.29 12.92 8.30 -92.71 -0.77 12.15 14 20 H 0.12 6.22 6.15 -2.91 -0.02 6.20 14 21 H 0.16 5.04 8.06 -2.91 -0.02 5.01 14 22 H 0.20 4.48 8.06 -2.91 -0.02 4.45 14 23 H 0.12 5.75 8.06 -2.91 -0.02 5.72 14 Total: -1.00 -56.50 228.19 5.09 -51.41 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: 1.24 Total: 12.88 kcal Atomic # 6 Polarization: -58.05 SS G_CDS: 2.12 Total: -55.93 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 0.24 Total: -39.41 kcal Atomic # 9 Polarization: -7.15 SS G_CDS: 0.78 Total: -6.37 kcal Atomic # 14 Polarization: 35.33 SS G_CDS: 2.03 Total: 37.36 kcal Atomic # 16 Polarization: 1.38 SS G_CDS: -1.31 Total: 0.07 kcal Total: -56.50 5.09 -51.41 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238587487.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.140 kcal (2) G-P(sol) polarization free energy of solvation -56.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds