Wall clock time and date at job start Mon Mar 30 2020 03:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00127 * 2 1 4 4 H 1.48506 * 109.46695 * 95.15314 * 3 2 1 5 5 H 1.48501 * 109.47071 * 215.14510 * 3 2 1 6 6 H 1.48490 * 109.47391 * 335.14995 * 3 2 1 7 7 C 1.37883 * 119.99581 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00115 * 1.69931 * 7 2 1 9 9 C 1.50701 * 119.99560 * 181.69367 * 7 2 1 10 10 H 1.09000 * 110.26889 * 25.29559 * 9 7 2 11 11 C 1.54345 * 110.30741 * 263.21324 * 9 7 2 12 12 C 1.54491 * 102.32836 * 214.79314 * 11 9 7 13 13 C 1.51362 * 105.21870 * 26.22983 * 12 11 9 14 14 C 1.38237 * 109.76224 * 342.88170 * 13 12 11 15 15 C 1.38459 * 119.86302 * 180.02562 * 14 13 12 16 16 C 1.38153 * 120.24252 * 359.97438 * 15 14 13 17 17 C 1.38188 * 119.94905 * 0.02562 * 16 15 14 18 18 C 1.38263 * 119.91944 * 0.02562 * 17 16 15 19 19 Cl 1.73605 * 119.90642 * 179.97438 * 18 17 16 20 20 H 0.97002 * 120.00050 * 359.97438 * 1 2 3 21 21 H 1.09001 * 110.81843 * 332.95184 * 11 9 7 22 22 H 1.09001 * 110.82166 * 96.49886 * 11 9 7 23 23 H 1.08997 * 110.22159 * 267.32550 * 12 11 9 24 24 H 1.08999 * 110.42720 * 145.24426 * 12 11 9 25 25 H 1.08003 * 119.88309 * 180.02562 * 15 14 13 26 26 H 1.08000 * 120.02389 * 180.02562 * 16 15 14 27 27 H 1.07995 * 120.04308 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6055 1.9834 1.3945 5 1 3.4881 1.4739 -0.8060 6 1 1.3965 2.6816 -0.5883 7 6 2.0044 -1.1942 -0.0005 8 1 1.4648 -2.1291 -0.0287 9 6 3.5110 -1.1944 0.0380 10 1 3.8771 -0.2768 0.4985 11 6 4.0833 -1.3437 -1.3876 12 6 5.3542 -2.1882 -1.1461 13 6 5.0758 -2.9725 0.1181 14 6 4.0166 -2.4017 0.7987 15 6 3.5846 -2.9560 1.9917 16 6 4.2078 -4.0776 2.5038 17 6 5.2667 -4.6492 1.8244 18 6 5.7007 -4.0969 0.6335 19 17 7.0315 -4.8149 -0.2194 20 1 -0.4850 0.8401 0.0004 21 1 3.3829 -1.8743 -2.0326 22 1 4.3369 -0.3702 -1.8072 23 1 6.2175 -1.5378 -1.0052 24 1 5.5249 -2.8664 -1.9821 25 1 2.7568 -2.5105 2.5234 26 1 3.8676 -4.5073 3.4344 27 1 5.7552 -5.5257 2.2236 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238612514.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:33 Heat of formation + Delta-G solvation = 3.109166 kcal Electronic energy + Delta-G solvation = -12693.502279 eV Core-core repulsion = 10441.159740 eV Total energy + Delta-G solvation = -2252.342540 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 222.051 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.54016 -36.27003 -35.18072 -32.54628 -30.59429 -28.56213 -27.58976 -23.65105 -22.05814 -20.45378 -19.61506 -17.08487 -16.11828 -15.06727 -14.69514 -14.38736 -13.94756 -13.21139 -12.95964 -12.71271 -12.20305 -11.91529 -11.30445 -11.14107 -11.02077 -10.91387 -10.64606 -10.44304 -10.25305 -10.00018 -9.66965 -9.37003 -8.63099 -8.14535 -7.92549 -6.15342 -4.15581 1.69465 1.82529 2.51323 3.23028 3.32326 3.32641 4.17455 4.34415 4.97971 5.10907 5.32179 5.46406 5.71811 5.84229 5.90664 5.96517 6.08713 6.40520 6.41029 6.58055 6.60560 6.78436 6.84313 7.03168 7.13354 7.32308 7.40381 7.65284 8.44031 8.89580 9.45953 10.97483 Molecular weight = 222.05amu Principal moments of inertia in cm(-1) A = 0.042039 B = 0.008911 C = 0.007907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.881065 B = 3141.474258 C = 3540.506111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.074 3.926 3 Si 0.874 3.126 4 H -0.275 1.275 5 H -0.263 1.263 6 H -0.288 1.288 7 C -0.508 4.508 8 H 0.076 0.924 9 C 0.043 3.957 10 H 0.051 0.949 11 C -0.118 4.118 12 C -0.080 4.080 13 C -0.104 4.104 14 C -0.033 4.033 15 C -0.095 4.095 16 C -0.117 4.117 17 C -0.133 4.133 18 C -0.025 4.025 19 Cl -0.095 7.095 20 H 0.265 0.735 21 H 0.073 0.927 22 H 0.061 0.939 23 H 0.070 0.930 24 H 0.066 0.934 25 H 0.130 0.870 26 H 0.125 0.875 27 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.865 -5.486 1.698 12.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.129 4.129 3 Si 0.701 3.299 4 H -0.201 1.201 5 H -0.188 1.188 6 H -0.214 1.214 7 C -0.545 4.545 8 H 0.094 0.906 9 C 0.025 3.975 10 H 0.069 0.931 11 C -0.156 4.156 12 C -0.117 4.117 13 C -0.105 4.105 14 C -0.034 4.034 15 C -0.113 4.113 16 C -0.135 4.135 17 C -0.152 4.152 18 C -0.051 4.051 19 Cl -0.067 7.067 20 H 0.075 0.925 21 H 0.092 0.908 22 H 0.080 0.920 23 H 0.089 0.911 24 H 0.085 0.915 25 H 0.148 0.852 26 H 0.143 0.857 27 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 10.803 -5.426 1.613 12.196 hybrid contribution 0.462 0.739 -0.012 0.871 sum 11.265 -4.687 1.602 12.305 Atomic orbital electron populations 1.69887 1.06290 1.27114 1.50110 1.25059 0.94711 0.98890 0.94212 0.86912 0.80340 0.83757 0.78875 1.20110 1.18811 1.21386 1.20861 0.87760 0.94684 1.51210 0.90580 1.18837 0.97271 0.91099 0.90315 0.93112 1.22701 0.94505 0.98479 0.99961 1.21112 0.99549 0.97369 0.93647 1.20574 0.96633 0.94539 0.98709 1.21148 0.92069 0.97051 0.93110 1.20884 0.99474 0.95279 0.95710 1.20949 0.96055 0.96582 0.99909 1.20724 0.98993 1.01086 0.94408 1.20469 0.92929 0.96464 0.95287 1.98311 1.47150 1.83431 1.77790 0.92496 0.90789 0.92044 0.91125 0.91525 0.85221 0.85739 0.85830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.46 13.96 55.43 0.77 -25.69 15 2 C 0.07 2.03 5.47 -17.82 -0.10 1.93 15 3 Si 0.87 20.58 26.87 -169.99 -4.57 16.02 15 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 5 H -0.26 -5.87 6.55 56.52 0.37 -5.50 15 6 H -0.29 -6.80 7.11 56.52 0.40 -6.40 15 7 C -0.51 -13.60 8.63 -34.44 -0.30 -13.90 15 8 H 0.08 2.25 8.06 -52.49 -0.42 1.83 15 9 C 0.04 0.99 2.36 -91.88 -0.22 0.77 15 10 H 0.05 1.17 5.69 -51.93 -0.30 0.87 15 11 C -0.12 -2.40 6.59 -25.24 -0.17 -2.56 15 12 C -0.08 -1.41 6.47 -26.78 -0.17 -1.58 15 13 C -0.10 -1.96 6.05 -104.17 -0.63 -2.59 15 14 C -0.03 -0.69 5.60 -104.21 -0.58 -1.27 15 15 C -0.10 -1.82 9.77 -39.53 -0.39 -2.20 15 16 C -0.12 -1.86 10.04 -39.63 -0.40 -2.26 15 17 C -0.13 -2.08 9.83 -39.59 -0.39 -2.47 15 18 C -0.03 -0.43 6.32 -39.45 -0.25 -0.68 15 19 Cl -0.10 -1.42 28.71 -51.86 -1.49 -2.91 15 20 H 0.27 7.35 8.31 -40.82 -0.34 7.01 15 21 H 0.07 1.55 7.91 -51.93 -0.41 1.14 15 22 H 0.06 1.18 7.63 -51.93 -0.40 0.79 15 23 H 0.07 1.14 8.14 -51.93 -0.42 0.72 15 24 H 0.07 1.08 8.14 -51.93 -0.42 0.66 15 25 H 0.13 2.49 8.06 -52.48 -0.42 2.07 15 26 H 0.12 1.59 8.06 -52.49 -0.42 1.17 15 27 H 0.12 1.60 8.06 -52.49 -0.42 1.18 15 LS Contribution 245.47 15.07 3.70 3.70 Total: -1.00 -28.18 245.47 -7.98 -36.16 By element: Atomic # 1 Polarization: 2.35 SS G_CDS: -2.81 Total: -0.46 kcal Atomic # 6 Polarization: -23.23 SS G_CDS: -3.59 Total: -26.82 kcal Atomic # 7 Polarization: -26.46 SS G_CDS: 0.77 Total: -25.69 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.57 Total: 16.02 kcal Atomic # 17 Polarization: -1.42 SS G_CDS: -1.49 Total: -2.91 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -28.18 -7.98 -36.16 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238612514.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.266 kcal (2) G-P(sol) polarization free energy of solvation -28.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds